cfap77 (cfap77)


Basic Information

Item Value
gene id cfap77
gene name cfap77
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 49674141 ~ 49747277 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021606690.2
GCGTCTTTAGAACGTTGACAACAATGGCAATCTCGCGACAATAGTGACGGAGGTGCAACCCACAGAGTTTGGTCAGAGATACTCAGAGTCGGTACTTTTGAGGAGTTGGGAAACTCCTTTGGAATCATATTAATGTACCTTGCTCATGATAGGACAAGGAGTGCTGTCCTTCAAATAGTGAATGGGAGTCAAACTGGGCGCCAGATCAAAAACCCAATATTAGCATTAATTTCGTCAACAAGAACtacaacattacaaatattttcCGAGATGTGAGATAATTAACTCGTTCTCTGTAATACCGTATTGCTTTGGAATTGTGACCTTATGTACTTTCGAGAAAAATAGGCAGGTTTCTCGAGTCATTccctgactttgagaagggattgcAAGACAATTAGTTTAGCAACTACGTGACAAAACATGACAACGTGAACGCGATTGGTCTACAGTCTGCTAGATAGACTTATATGTTCCTCCATTCATTCCTATTTGTATTCTCTCTGGTTTGGTGTACACTTTTCGTCAATGTTTGGCGTCTCGTTTCCATAACAACAGAAGATACCAACAGGAAGTACagagGTGTAACCGTCCTGAAACTGGAAATGCAGGCTTCTCGCGTCGGAGTGGTCAGGGACTCCATGCTGGCTAATCCTCTTTTAATTAGGCCAGCGCTTGGGAAGACCAAGTCTAAAGGGTTGACATGTCTTGGACCTGACTTTGTGTACGGAACTGTTGCGACCATCCAGGACGGAGGAGTCTCAGAAGCCTTGTCCAACTGGCACACACACTCCCTACCCACCAGTGGCAGTAGAGGCCACTCCAGGAGGCCTGGGAAGGACTTTGTGGCTCTGAACCGCGAGGGGGTGAAGTCTGGCCTGGTGACTGCCAAGGAGCATTATCAGTACCGCGCCACCCACGACAGGAGACAAGCCTCCCTTGCCAGAAGGGGCTCCCGTGTCCCTGTGCCCCCTCGCATCCCCCCTGACACTACCTTTGGCATCTCGACACAGCCATCCACTCCCATCTGTGAGCTTCTGGAGCACAAGTACGCTCAGCGCTGGTTAGAGGAGCAGCAGGCCAAGGAGAGAGCCCTGGAGGAGAGGCAGCTCAACTTGCCTAAGCTGGGCCGCATTCAGGAGACACGGACAACTCTGTTGAGGAAGAGTCGGCCGATGCCTGAGTCCACCCCGCTGTGGAAGCTTCCCCGCTTCCAGCAGGTTGGCCCAGCTCTGGACACATTCCGGGATCCATATGCTAGAAAGAAGGCCTTCAATGCACACTTCTCAGACTCAGTGGCACGGACAGGACAGCTGGGCCAGGGAACCTACACTGTGGGCTAAAACATACATAGAGAAGAGTCTATGTAGTAACTGTTGGGGTAGGGAGTAGGGGTGCAAAGTCTTATTTTCCAACCAGCCTTAATCAAATTGCTCTCAGATGCAAtcaacctatatatatatatatatatatatatatatattactcatACTGACAATATTATTATCATGGGATTTTACTGATTTCTACAACTCCTCAATTACAGATTGTACTTTGAGTTTGTTGGCAAAAAAACAGATATTGTACTTCCGGCCGGACTTACACTGTTACCACCACAAGGATTTGTAATATGTTTGTAGACTACACTACTCTTTAACTCAGCGAGAAGGTAAAGTACAAAACACTCAAATGCTATGAATGTGTTCCaggaaaaataaaggaaaaatattaAGTTATTCAAATATGCTAA

Function

symbol description
cfap77 Predicted to be located in cilium. Orthologous to human CFAP77 (cilia and flagella associated protein 77).

NR:

description
cilia- and flagella-associated protein 77

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021606690.2 True 1750 mRNA 0.46 7 49674141 49747277

Neighbor

gene id symbol gene type direction distance location
LOC118965033 LOC106585477 coding upstream 107502 49553029 ~ 49566639 (+)
LOC118936463 LOC106585477 coding upstream 151426 49518592 ~ 49522715 (+)
LOC118964898 LOC106585477 coding upstream 287390 49347319 ~ 49387212 (+)
LOC118964903 NA coding upstream 370785 49302665 ~ 49303356 (+)
LOC110526066 LOC106584148 coding upstream 427641 49233579 ~ 49260632 (+)
barhl1a barhl1 coding downstream 1511 49748788 ~ 49753260 (+)
spaca9 NA coding downstream 148571 49895848 ~ 49897364 (+)
grin1b LOC106587016 coding downstream 201361 49948638 ~ 50001016 (+)
kazald3 LOC106587018 coding downstream 303927 50051204 ~ 50054481 (+)
rsph14 rsph14 coding downstream 325049 50072326 ~ 50086959 (+)
G516443 NA non-coding upstream 4199 49669740 ~ 49669942 (+)
G516441 NA non-coding upstream 5595 49668249 ~ 49668546 (+)
G516025 LOC106585477 non-coding upstream 28409 49600276 ~ 49645732 (+)
G516101 NA non-coding upstream 82004 49568096 ~ 49592137 (+)
G516096 NA non-coding upstream 90581 49559696 ~ 49583560 (+)
G516628 tsc1 non-coding downstream 150159 49897436 ~ 49899671 (+)
G516649 NA non-coding downstream 181132 49928409 ~ 49928968 (+)
G516659 NA non-coding downstream 189042 49936319 ~ 49936792 (+)
G516661 NA non-coding downstream 191669 49938946 ~ 49939253 (+)
G516011 NA other upstream 367001 49305125 ~ 49307140 (+)
edf1 edf1 other upstream 486818 49183291 ~ 49187334 (+)
LOC110526072 LOC106587002 other upstream 719850 48948617 ~ 49037542 (+)
LOC118964907 NA other downstream 973124 50719208 ~ 50743120 (+)
LOC110526128 NA other downstream 1164551 50911697 ~ 50922106 (+)
LOC110493840 LOC106605670 other downstream 2531216 52277694 ~ 52279409 (+)
G519603 NA other downstream 2904663 52651940 ~ 52655297 (+)

Expression


Co-expression Network