spaca9


Basic Information

Item Value
gene id spaca9
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 49895848 ~ 49897364 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036981761.1
ATGTTGCCCAGCAACGTCAGAACGCTCGTTGATTGTTGGCCATTACACACTCACAACATCTTCAAACTGCAGCAGGTCCTTTTCATAGCAGCCCTGAGGTCACACAAGCATGCTCATGATAGGACAGAACCAGTGGCAACAGTCATGCAGGTGAGACCATCTCAGTTTTTCTCACAGgtcctttttttaaataaaatataccCATCCCTTATTGCACACATTCAAGGGTACATGGAGCACCATTGTATTAATGCCACAGATCTACACATTTTCACCCTCTTCTTGAAAATTGTGGAGGACTACAACATCAGCAAACTGCAGGCCCATAATAACTGTTGCATTTTAAACTGGAGTTGTGAGGTTGGACTATTTTGCCTGTTTTCTAACCCAGGTCCTTTCTTTGTCTGTAGTTACCCACATGATAAAGTGAATCGACTGAGCTGTGACAAGGCCAGGAACTACTACAGTGGTGTGGTAAGCCTTATCCTACTAGCACTGGAGCTACTGCAAAGGATGGTCAGTTCCTACACCTACTGCGGCCAGGACAACACGTCTGCTGGGGATCCTAATGTGGATGTGCTTGAGTCCTCAGGACAGCGAGGTGGGACGGCTGGTGTGGGAGACGTGTCTTTCAGCCTGACTGGGCACGCTACTTGTGCTCATAACACTAAGAAGACCCAAGCTAAGAGAACAGGCGCGTGGCATGCAATCAAGCCAGCCTGGAGACCTCCAAGCCTCACCACCAGGATTAGGCCTTTTCCTCTATTTGACATAAATCAGCATTGCAATAAAGTTTGTTTCTCTTGGTTTGACTTGTGGTCAACTATTACTCAGAACTTGGCAACCATATTACACAATGTTTCATACAACAGACAAACTGGACAAATAGTCTTCAACACCATTTGCATTGAGACACAAGTGATTTCCATCAAAACAATGCAGTGGCATTTCTAAACCCCACTGACACTGTAGAATAAGAAGGTAAATAACTATCTCGGCGTCCATAACCAAATATTGTTCAAT
>TU586030
ATTCTGAGACCACAGTGCTTCGTTGTCAATCATGTACTACACATCCGTGTCTATCATTTAGCAACATTCTGCGCTATTTGTAACTTTGTATCCAAATTAAAAAATATTGATACTGCTAGACTGACTCGGCACATAGACCCGCAGgtaaattgtatttattatgaCCTTTCCAGAGTTGTCTCGAAAATCCAGTACTTACATTGGTACAAGGCTGTCTGTCTAGAGACTTTGTCCAGAGCAGCAGAGTATATGTATTGGGCTGCAGCTCCATATTGTAAACTTATCCATCTCAAATGGCATTTTCCTGTTGACGAGTGTGCACAACTGGCAAGGGAGAGGTTGAAGGCCATTACACACTCACAACATCTTCAAACTGC

Function

NR:

description
LOW QUALITY PROTEIN: sperm acrosome-associated protein 9

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036981761.1 False 1023 mRNA 0.45 5 49895848 49897364
TU586030 True 377 lncRNA 0.41 1 49895906 49896282

Neighbor

gene id symbol gene type direction distance location
barhl1a barhl1 coding upstream 142588 49748788 ~ 49753260 (+)
cfap77 cfap77 coding upstream 148571 49674141 ~ 49747277 (+)
LOC118965033 LOC106585477 coding upstream 329209 49553029 ~ 49566639 (+)
LOC118936463 LOC106585477 coding upstream 373133 49518592 ~ 49522715 (+)
LOC118964898 LOC106585477 coding upstream 509097 49347319 ~ 49387212 (+)
grin1b LOC106587016 coding downstream 51274 49948638 ~ 50001016 (+)
kazald3 LOC106587018 coding downstream 153840 50051204 ~ 50054481 (+)
rsph14 rsph14 coding downstream 174962 50072326 ~ 50086959 (+)
LOC110526093 dmtn coding downstream 209428 50106792 ~ 50208464 (+)
si:dkey-220o5.5 LOC106587021 coding downstream 300978 50198342 ~ 50299370 (+)
G516489 NA non-coding upstream 134238 49713585 ~ 49761610 (+)
G516443 NA non-coding upstream 225906 49669740 ~ 49669942 (+)
G516441 NA non-coding upstream 227302 49668249 ~ 49668546 (+)
G516025 LOC106585477 non-coding upstream 250116 49600276 ~ 49645732 (+)
G516101 NA non-coding upstream 303711 49568096 ~ 49592137 (+)
G516628 tsc1 non-coding downstream 72 49897436 ~ 49899671 (+)
G516649 NA non-coding downstream 31045 49928409 ~ 49928968 (+)
G516659 NA non-coding downstream 38955 49936319 ~ 49936792 (+)
G516661 NA non-coding downstream 41582 49938946 ~ 49939253 (+)
G516664 NA non-coding downstream 44056 49941420 ~ 49941621 (+)
G516011 NA other upstream 588708 49305125 ~ 49307140 (+)
LOC110526066 LOC106584148 other upstream 649395 49233579 ~ 49260632 (+)
edf1 edf1 other upstream 708525 49183291 ~ 49187334 (+)
LOC118964907 NA other downstream 823037 50719208 ~ 50743120 (+)
LOC110526128 NA other downstream 1014464 50911697 ~ 50922106 (+)
LOC110493840 LOC106605670 other downstream 2381129 52277694 ~ 52279409 (+)
G519603 NA other downstream 2754576 52651940 ~ 52655297 (+)
G521552 prmt3 other downstream 4028578 53925942 ~ 53955130 (+)

Expression


Co-expression Network