rsph14 (rsph14)


Basic Information

Item Value
gene id rsph14
gene name rsph14
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 50072326 ~ 50086959 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021606710.2
TGGGAAGCAGTGGCGCTGAGTAGCTAAATAACTGTTCTGCTCGCTGGCAAACAACTAGTGACAGGCAGCTTATTGTTACAATATAGCGAAATAAGGTTAGCTATAATCAACAGTTGTTTAATAACAACAATTCTTATTTTGTTAGATTATGGCTAGCACAAGGATTTCGGAGCAATTGCCCCCGCATTTTGACCCGACTCAAGCACCTGTTGCATTCGGCAACCGAGCCCTTCCGCGGCTCTCTCTGGAACTGCAAGATCCACAGCTGTGCATACGACAGAGAGCTCTTGCAGCCCTCTGCGACCTGGTTCATGACCCAAAGAGGGCATATGAGGCTATTCACAAAGGCTGTTTGGAGAGGCTGAAGGTCCTGCTGCAAGACAGAGACAGCTCAGTGAGAATCAAAACTACAGAAGTCTTTTACCTACTAGCTGCCCATAATGTGGGGAGAGAAGCCTTCCTCACGTGGGATGTGGTGGCTCCACTGTCTGATCTTCTAGACGAGCCAGTTGATGCCTGTCGTAAAAACATGCATCGTGCACTGAAGATGGTGGCTGAGTTTCCTGCAGTGTGTATCGTAACTTTGGGCCTGATTCCCCGGCTGGTGATGAAGCTGCCTGTTGAGCAGGAGGAGATCCGGGCCCTTATCCTGGCCACTCTCAGCTACTGTGTGAGGGTGGATGCCCTGCCAGCCCTGGCCAGTGACGGAGTTCCCATGCTGCGAAACCagctctctcacccctcccctgACATCCGCCGGGCCGCAGCCTCCGCCATGTTGGGCATCAGTGTTCCATCAGAAGGAAAGCACAAGGTATGTGAGGAGGGAGTTCTCCCAATCCTAGTGAAGCTGCTATCAGACTGTGACCCAGGAGTGACTGCCAGTGCTGCTGGGACTATTATGAACACAGCTATTATCACTGAAGGGAAATACCAGGCCTTAAAGGCAGGTGCCATTCCCCCCTTGTTGGAGCTGGTGGGCAGTGAGGACAGAGCTGTGTGTGCTAACGCGCTGCGTGCCCTCACCACCCTGGCTGAAGCCCCCTGCGCTCGGGAACAGCTACTGGAGCACCTGCCACTATTAAAGACAAGACTCAATCACCCAGCTTCCATCATCTGCCGGGCAGCAGCCACTGCCATCCGCGTGATCTCCTGGACcccctgagagaaagagagagcaagggaaGAAGAGACAAATACCTCTCATTATCTGATTCTCCCTCGCTTCTCcccctattctctctccctcacacacattgacacacacaggcacacatgtgCTCTCactgacacaccacacacaatcaGTCCTTCTTCTACTACAGACACTCACACTTCCTTAATGTAAATGTCTGCTGGTGTACATTTACCAGACTAGTAGACCCACCTCTGTCTGTGTCATCTATCCTATTAATGTGATTAAAACTGAGCACAGTG
>XM_021606708.2
TAAATAACTGTTCTGCTCGCTGGCAAACAACTAGTGACAGGCAGCTTATTGTTACAATATAGCGAAATAAGGTTAGCTATAATCAACAGTTGTTTAATAACAACAATTCTTATTTTGTTAGATTATGGCTAGCACAAGGATTTCGGAGCAATTGCCCCCGCATTTTGACCCGACTCAAGCACCTGTTGCATTCGGCAACCGAGCCCTTCCGCGGCTCTCTCTGGAACTGCAAGATCCACAGCTGTGCATACGACAGAGAGCTCTTGCAGCCCTCTGCGACCTGGTTCATGACCCAAAGAGGGCATATGAGGCTATTCACAAAGGCTGTTTGGAGAGGCTGAAGGTCCTGCTGCAAGACAGAGACAGCTCAGTGAGAATCAAAACTACAGAAGTCTTTTACCTACTAGCTGCCCATAATGTGGGGAGAGAAGCCTTCCTCACGTGGGATGTGGTGGCTCCACTGTCTGATCTTCTAGACGAGCCAGTTGATGCCTGTCGTAAAAACATGCATCGTGCACTGAAGATGGTGGCTGAGTTTCCTGCAGGTGCAGTGTGTATCGTAACTTTGGGCCTGATTCCCCGGCTGGTGATGAAGCTGCCTGTTGAGCAGGAGGAGATCCGGGCCCTTATCCTGGCCACTCTCAGCTACTGTGTGAGGGTGGATGCCCTGCCAGCCCTGGCCAGTGACGGAGTTCCCATGCTGCGAAACCagctctctcacccctcccctgACATCCGCCGGGCCGCAGCCTCCGCCATGTTGGGCATCAGTGTTCCATCAGAAGGAAAGCACAAGGTATGTGAGGAGGGAGTTCTCCCAATCCTAGTGAAGCTGCTATCAGACTGTGACCCAGGAGTGACTGCCAGTGCTGCTGGGACTATTATGAACACAGCTATTATCACTGAAGGGAAATACCAGGCCTTAAAGGCAGGTGCCATTCCCCCCTTGTTGGAGCTGGTGGGCAGTGAGGACAGAGCTGTGTGTGCTAACGCGCTGCGTGCCCTCACCACCCTGGCTGAAGCCCCCTGCGCTCGGGAACAGCTACTGGAGCACCTGCCACTATTAAAGACAAGACTCAATCACCCAGCTTCCATCATCTGCCGGGCAGCAGCCACTGCCATCCGCGTGATCTCCTGGACcccctgagagaaagagagagcaagggaaGAAGAGACAAATACCTCTCATTATCTGATTCTCCCTCGCTTCTCcccctattctctctccctcacacacattgacacacacaggcacacatgtgCTCTCactgacacaccacacacaatcaGTCCTTCTTCTACTACAGACACTCACACTTCCTTAATGTAAATGTCTGCTGGTGTACATTTACCAGACTAGTAGACCCACCTCTGTCTGTGTCATCTATCCTATTAATGTGATTAAAACTGAGCACAGTG

Function

symbol description
rsph14 Orthologous to human RSPH14 (radial spoke head 14 homolog).

NR:

description
radial spoke head 14 homolog isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021606710.2 False 1437 mRNA 0.52 6 50072326 50086959
XM_021606708.2 True 1419 mRNA 0.52 6 50072350 50086959

Neighbor

gene id symbol gene type direction distance location
kazald3 LOC106587018 coding upstream 17845 50051204 ~ 50054481 (+)
grin1b LOC106587016 coding upstream 71310 49948638 ~ 50001016 (+)
spaca9 NA coding upstream 174962 49895848 ~ 49897364 (+)
barhl1a barhl1 coding upstream 319066 49748788 ~ 49753260 (+)
cfap77 cfap77 coding upstream 325049 49674141 ~ 49747277 (+)
LOC110526093 dmtn coding downstream 19833 50106792 ~ 50208464 (+)
si:dkey-220o5.5 LOC106587021 coding downstream 111383 50198342 ~ 50299370 (+)
fam160b2 LOC106587022 coding downstream 213123 50300082 ~ 50312773 (+)
adam9 adam9 coding downstream 253076 50340035 ~ 50417982 (+)
ogdha LOC106587025 coding downstream 356557 50443516 ~ 50513889 (+)
G516725 NA non-coding upstream 22303 50049711 ~ 50050023 (+)
G516700 NA non-coding upstream 46550 50025517 ~ 50025776 (+)
G516696 NA non-coding upstream 58514 50013611 ~ 50013812 (+)
G516692 NA non-coding upstream 61618 50010140 ~ 50010708 (+)
G516691 NA non-coding upstream 65695 50006281 ~ 50006631 (+)
G516734 NA non-coding downstream 1725 50088684 ~ 50089008 (+)
G516744 NA non-coding downstream 4208 50091167 ~ 50091585 (+)
G516745 NA non-coding downstream 5116 50092075 ~ 50092450 (+)
G516748 NA non-coding downstream 9249 50096208 ~ 50096449 (+)
G516751 NA non-coding downstream 14873 50101832 ~ 50102060 (+)
LOC118964898 LOC106585477 other upstream 685114 49347319 ~ 49387212 (+)
G516011 NA other upstream 765186 49305125 ~ 49307140 (+)
LOC110526066 LOC106584148 other upstream 825873 49233579 ~ 49260632 (+)
edf1 edf1 other upstream 885003 49183291 ~ 49187334 (+)
LOC118964907 NA other downstream 633442 50719208 ~ 50743120 (+)
LOC110526128 NA other downstream 824869 50911697 ~ 50922106 (+)
LOC110493840 LOC106605670 other downstream 2191534 52277694 ~ 52279409 (+)
G519603 NA other downstream 2564981 52651940 ~ 52655297 (+)
G521552 prmt3 other downstream 3838983 53925942 ~ 53955130 (+)

Expression


Co-expression Network