si:dkey-220o5.5 (LOC106587021)


Basic Information

Item Value
gene id si:dkey-220o5.5
gene name LOC106587021
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 50198342 ~ 50299370 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036980386.1
TGGTCGCTTTATGTAGATTTTTTGCAAAAGTGAGAAGGGGAGTGACTTTTCTTATGGTTTTTGCTGGTCGACGAGTTGAGCTGGAGTTTCACTGTTGACTAGCCTAGTCTCATCACCTCAACCTATAGAACCTCAAGCTAAGATATTGTCGTCGGAGAGAACAGTGGCTCATATTGGACACAGCTATGATATCGGGGGGAAAATAAACTTCCCAGGGACGCTTTGAGCATTTCCAGGGATGGACAAACAAAAAGTGCTGAACCGTCTGATCACAGATCTGCACTCCTTCCTGGTGGTGCTGGACAGTGAGAACCTCAGCTACATCGCTCAGGCCCAAAAGAAGTCTATCTCAGAGCTGCTGTCCAAGCTGCAAGACACCCCTGTTGAGGATGCTGAGTATATGATCATGAGCTGTCCATCAGGGTCCCCAAGCAATGATCTCAGGGAAACCCAGCTGTCAGGCACAGTTGGTCTGTTCCAGTCAGGACCAGACCCGGACTCAGCCGAGGAGACCTTGTCCTCTGCCTCTACCGAATGGCTACGGAAAGGGAGCCAGGAGCCGGCGGTACCCCCCCAACCTCCAGAAGGTTTAGATGAGGACTGCTACGAGGAGGCTGAGCCTTTTGTTCCAGACAATCCCTCCACAGACAAAGGTGACTCAGACAGCAGTCACTACGAGTCATACGGTGAGGAAGATGAGGAGTTTGTGAAGGACCGGGCCCACTACATCCAGTGGAGTGCCTCCCAGACCTGTCTGCGGCCTACTTCTGAGTCACGCATCTGTGGCTACCTGTGGAGGAAGAAATGGCTGGGCCAATGGACCAAACAACTCTTTCTCGTCCGCAACAATCTGCTGTTGTGCTACAAATGTGCCAAGGACCTCTACCCGCTGCTGGAGCTCGACCTGCGGGGCTGCCAGGTGGTTTACAAGTCCAAGCACAACAAGAAGATGCAGCACGAGCTCAAAGTTGTGACTGGTTCCGACACAGTGGTGATGGGCTTCCAGAGCTGCCAGCAGGCGGAGGAATGGAGGAAGATCATTGAGGAGGTGAAGGGCTCCTCCTACTATGAGCCAGAGTCCCAAAGGTTCTCCTTGTTACTCAAGTGTGACAGACTGGACTCTTGCAGGTCAAGCACAGTCATTCAGACTTCAGACTCGGATGAAGAGAAAATGTTGGTGCTGCCCTCTGCTCCCAGCAGTGTGGAAATTAAGGATAAAGGGTTCCTGAATGTGCTGATGAACTGCCAGTGGCAGAGCCTGTTGTGCCAAGTACAGGGCGGGGTGCTGAAAATGTTCCGAGACGAGGGCTGTGAAGAGTGCCCTCAGTACACGGTGCAGCTGAAAGGCTGCCAGGTTCGACCTGGCCCCGACACACCTCAGGCCTACCGCATCACTGTGGTCCAACACGGAGACCAGGTGGCAGTACTGGAGGCCAGCTGTGCAGATGAGAAAGAGCAGTGGTTGCAGCTCCTACAGGACGGGAGTGTAAGCCAGGATCAGGCTGACTCTCTATATGACTCAAAGTCTGCTGGAGCCCTCAGTGGTTTGAAGGAGCAAAGGTTCCCAACCTCAAACATGTACATAGATGACCCCTTTCACCAGCACAGTGGAAGCGGCCGCTCACAACCCATCTACTCCAACACGGCCATACTGGAGCACATGTTCCAGAATTCCCATAACGTCGCCAGGGGAGACTCAGTGTCATCGAAGGATTCAGTCAACTACAGCAACACTGATATCTTTAACAATCACAGTAGGAAATCGTGTGAGGTGGAGCGGGGGGTTCAGAAACTGGACTTGACTGGGAAGAGAAGGGTACAGCTGAGAGCTGGGTCAGAGATGAACCTCATCACTGCAGGGAAGACCGCCAAATGTACCTCCTTCAGACAGTCTCTGGCCTTCTGTACAGAACGGGCACAGGGTGGTTTTTTTACCCCACTATTGCGAAGGACTGCCTCCGCTAAAAACTCACTGAAAAGAGCCCCTTCTGCCCTATTTATTGAGCATGGCAAGGTGTTTCAGAGAAAGAAGGAGTGGGAGACAATGCCTTCTACTTAGTACTATACTAGCTGTTTCGGTAACAATTATCTTGTATACATTTCCTATTTTCTACCAAACATTTTTGTCATTAGAAATGTCATCCATCTTGATGATAATACAATACACTATACTTGCTTCCCCAATGGCACCCCTTCCTCTATTTAGCCCATAAGggtctggtgaaaagtagtgcactatatagggaatagggtgccatttgcgacagGCCCTTAGATAAACAGGCTTGTTTCTCCATTAAAACAGCTGCATTAATAAGAGATTCCTGTGAGGGTAATTCAATTGAAAACCTTGTAAAGCCTGACTCAGGAACTCAGGAATGTCTCTCAGTTTGAGGTGTACCACTTTCATTGTTTTTCCTTCTTTCATTTCTTAAAGAACAGTTTGTATTGTCTAATTTGTCTATGTATGTATTGCAATTCATCAGACTTAACTTTGCACTGTTTTCATCACTAATTGAGttacaataaatacacaatgttGAAGTCATGAAAAATACATTATATATGGATATGAATTGAAGTCATGTTCACCGTATACAGTTCTGTGGTATAATTTAAACATAGTTGCAGATATCTTTTTATAAAGTGTTTTTACCATGATATTTTTACTTAGTATCACTGAGATGTTTTGCATTCCTGAAATATGTTGTGATACAGTGACATCTATTGTAATGTTCCCATGTTTTTATTAATAGAGACTTTGTGTATTAAATGTTAGGTTGGCCTACTATTTGCTGTAATCTGACAACTGTGGTAATAAAACAGTAATTAAAACA

Function

NR:

description
actin filament-associated protein 1-like 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036980386.1 True 2837 mRNA 0.47 16 50198342 50299370

Neighbor

gene id symbol gene type direction distance location
LOC110526093 dmtn coding upstream 1212 50106792 ~ 50208464 (+)
rsph14 rsph14 coding upstream 111383 50072326 ~ 50086959 (+)
kazald3 LOC106587018 coding upstream 143861 50051204 ~ 50054481 (+)
grin1b LOC106587016 coding upstream 197326 49948638 ~ 50001016 (+)
spaca9 NA coding upstream 300978 49895848 ~ 49897364 (+)
fam160b2 LOC106587022 coding downstream 712 50300082 ~ 50312773 (+)
adam9 adam9 coding downstream 40665 50340035 ~ 50417982 (+)
ogdha LOC106587025 coding downstream 144146 50443516 ~ 50513889 (+)
LOC110525036 NA coding downstream 230692 50530062 ~ 50535333 (+)
LOC110526111 zmiz2 coding downstream 242323 50541693 ~ 50630258 (+)
G516751 NA non-coding upstream 96282 50101832 ~ 50102060 (+)
G516748 NA non-coding upstream 101893 50096208 ~ 50096449 (+)
G516745 NA non-coding upstream 105892 50092075 ~ 50092450 (+)
G516744 NA non-coding upstream 106757 50091167 ~ 50091585 (+)
G516734 NA non-coding upstream 109334 50088684 ~ 50089008 (+)
G516918 NA non-coding downstream 84636 50384006 ~ 50385057 (+)
G516933 NA non-coding downstream 134362 50433732 ~ 50433997 (+)
G516964 NA non-coding downstream 174159 50473529 ~ 50506298 (+)
G517000 NA non-coding downstream 220469 50519839 ~ 50536407 (+)
G516990 NA non-coding downstream 390532 50689902 ~ 50699685 (+)
barhl1a barhl1 other upstream 446593 49748788 ~ 49753260 (+)
LOC118964898 LOC106585477 other upstream 811130 49347319 ~ 49387212 (+)
G516011 NA other upstream 891202 49305125 ~ 49307140 (+)
LOC110526066 LOC106584148 other upstream 951889 49233579 ~ 49260632 (+)
edf1 edf1 other upstream 1011019 49183291 ~ 49187334 (+)
LOC118964907 NA other downstream 421031 50719208 ~ 50743120 (+)
LOC110526128 NA other downstream 612458 50911697 ~ 50922106 (+)
LOC110493840 LOC106605670 other downstream 1979123 52277694 ~ 52279409 (+)
G519603 NA other downstream 2352570 52651940 ~ 52655297 (+)
G521552 prmt3 other downstream 3626572 53925942 ~ 53955130 (+)

Expression


Co-expression Network