LOC110525036


Basic Information

Item Value
gene id LOC110525036
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 50530062 ~ 50535333 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002473702.2
AAATCCAATATTATAAAAATGTTAATTGGCCACAATTGGTGACAGTTACTATAATGTAAAAGTGTTTTTGGAATGAGAGGGGTGGGCTGTGTCACAATACATTAAGTACCCTAAACACAGTGTATTATTCTTACAGCCAGTTCCAGTTACTGGGCTTCTCGGACTTGGAGAGGAGCTAGAGGTGCACCTTGTTATGCCATCACTCAAGAGCAACTGAGGTTTCTGATGTCCTGTGCTTTCAGTGTGTCTCAGATGGCAGATATTCTACATGTGTCCTGATCGACAGTCAAACGTTGTCTAAGACACTTCAATCTGTCACATGCACCATTATATTCTGACATGTCAGACTTGGCTCTGGATGAAAAGATTAAGGACTGGTGGCTGGGAACGACAAACGTGGAGCGGAGGCTGTTCGATCACAATTAAGAGCTCTAGGTGCAGAGTCGCAGAGTGAGGGACAGCATGCTCCGTGTTAACCCGAGGGTGGCTGCCCTTAGAGCCATGTCGCAGAGGCTGCATAGAAGGTCATACCGTGTTGCTGTACCAAACTCGTTATGGCACCTTGATGGAAACCACAAACTAATAAGGTGGAGGATAGTCATACATGGTGGCATTGATGGGTACAGCCGTCTCGTTGTTTCTCCGTGCCTTCAGCAACAATCGCAGCAGTAGAGTAATGGATTGCTTCATGAATGCTGTCTCCAGATATGGCGTTCCCTCCAGAGTTAGGACGGACCATAGAGGAGAAAACAACACTGTCTGCTTGTTGAATGTAATACAtagggaaaatatatatatattttttaaatagagCTACATGCATCCTTAAAATGTCTTCTTGACCTACACATTGATTACATTCTATAGTGAAGGATGCATGCGGCTACATTTTCTGTAAATCATTTTTAGAACGCAATCACATTATGTTTGACAGCTTTATTGCTTTCTACATGTTTTTGAAATGTATAAGCCTTTAAATGACATTTAACAGACTACTTCTACAAACAAGGCTACACTTGTGGCAGCACCTATTCCTGTGCCCCCCCCCATCGTCTGCACCACTTCTTGTGGCCCCCTCCACCTAAACCACTTCCTGTGGCCTCCCCTCCACCATTCCCTGAGGCTTATTGTCCACCTTCACCACACTCTTCTGTTGATGTTGAGGACAATGAGTAAGTCCTCCCTGTAAATAATTAAATGTCTTGTTATTACAGATGAAATGTGGGAAGTATCTGAGCTTTGCTATTCTGAATGTCTTTTTTTGTTGTGTTGACCTCCAAACACTGCTGAAGTTAATGAGATGCCAACCAAGTTAACGTGATGATTGACAACATTTATGATTGTGCCATGAGAGGCTTTAAGAGAGCCCGCTTTAGTCCAGAGGCAAAAATAGACATGGTTTTTAGGGATGCTGACAGAAAAGGGGCAGCTGAGGGTGGTCCCTCAAGACAGGGTGATCCTCTCCTGCTGCTAATGAGTGCCATCCATTCCTCTGCAATATTTGAGGGACCTGATTAGCAAAAATGCCTTTTTTTGTAACTCTCAAGGTGAGTTACACTTTAACACCAACAAAGACACATTTGTTTATGGCAATATATATGACTTGAGTAAGACATTTGATTTTTGTATTTAATGTGTCCTTTATTTGCTGTTTGTCTTCTGTGTGATAGCACTCTATGATGGTGTATACAAGCAGGTGGGCCGCTTGATTGCTGTCTGTCTGGTACATGGGGGTGTAGAGTCACATTTTTTTTTCAGAGGCTATACAGGCAAGTGTgtggccaacaacctcctgtgCCAGAACTGAAAGAAATTGCGGAATATGACTTCAGAGAGAAGTTGGAGAAGGTAAGTAGTTTATACTGTGAATGTTATTTATGTTACTGTTAATTTGCACtaagtttgaaaaaaaaaatggtattggTTCATGAATACCTTTCCACATGGATTTGGTTTCCTTTTGTTGGCAGTCAATCTTTTTTAAGGGTAGTGATAATCAGTTTATTGTTTTGCTAATTTGTCCCAAAACACAGATCAATAAACAATCTAAAATCCAGTTAGCATAAACTGTTGATGAGGCAACGGAAGCGGTCATGTTGGATCCAGTGCAATACATTCGTACATTGGAGAGGGATGCCCTGGTGGAGTCAACCACAAAGTTTTACATAGAAAGTAGGATACGGGATGCTCTTGAGCAGTGAGTTTCCATATGTCTAATTAATCTCAAGTTTAGTTAAATACTTCAGGGCAAATTCATTGACTTTTTTTTACTTTATAGATTCAAAGAGGGTCTGATGTGTCTAGGTCTCCTGCCTTAAATGAATAGACACTCAAGCCTCTTCATCTACGCTGAGAAACCTCTTTTGGCCAAAGACATAGCTTCTCTCTTCAAAGCAGAGCGCTCCCCACCTGGCACCAGTCAAAGAGCAATAGAGAAACAAGTCAAATGTTTCTGGAAGGACTGGCTTCTGGAGGTGGAAGGTTAGATGCAAAACCATGATCATTGAAGTAACACGGCCCACATCAATAAAATATCACCTCATCACGCATTTTATAGCCTTATTCTTCCATGGGCCCCCTAAGAATTTAATAGATCAATTAAATCCCAAACTACTTTCACTTAGAGTATTGTGTTCTCCAATAAGTGTTACTTATGAACCTTAATGTCCCCCCCCTTCCCTTTTTTCAGGGGGGAACACATACCCTTTAACCATGGGGAAGGTTTTCATTTTCACTTGGTGGGCTTCAGCATTCCTAGGCTGGTATTGCCAGTGGAGCCACAGCtacagttctctctgctactgcacggcaatcATTACcgtagcgccaagtctagg

Function

NR:

description
hypothetical protein cypCar_00016270

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002473702.2 True 2837 mRNA 0.42 3 50530062 50535333

Neighbor

gene id symbol gene type direction distance location
ogdha LOC106587025 coding upstream 16173 50443516 ~ 50513889 (+)
adam9 adam9 coding upstream 112080 50340035 ~ 50417982 (+)
fam160b2 LOC106587022 coding upstream 217289 50300082 ~ 50312773 (+)
si:dkey-220o5.5 LOC106587021 coding upstream 230692 50198342 ~ 50299370 (+)
LOC110526093 dmtn coding upstream 332932 50106792 ~ 50208464 (+)
LOC110526111 zmiz2 coding downstream 6360 50541693 ~ 50630258 (+)
LOC118964908 LOC106587027 coding downstream 128673 50664006 ~ 50670797 (+)
LOC110526117 LOC106587027 coding downstream 176053 50711386 ~ 50719146 (+)
LOC118964907 NA coding downstream 183875 50719208 ~ 50743120 (+)
LOC110526112 LOC106587027 coding downstream 211948 50747281 ~ 50761069 (+)
G516964 NA non-coding upstream 23764 50473529 ~ 50506298 (+)
G516933 NA non-coding upstream 96065 50433732 ~ 50433997 (+)
G516918 NA non-coding upstream 145005 50384006 ~ 50385057 (+)
G516751 NA non-coding upstream 428002 50101832 ~ 50102060 (+)
G516990 NA non-coding downstream 154569 50689902 ~ 50699685 (+)
G517068 NA non-coding downstream 226997 50762330 ~ 50763117 (+)
G517069 NA non-coding downstream 228383 50763716 ~ 50764117 (+)
G517101 NA non-coding downstream 237191 50772524 ~ 50773077 (+)
G517102 NA non-coding downstream 238013 50773346 ~ 50773606 (+)
barhl1a barhl1 other upstream 778313 49748788 ~ 49753260 (+)
LOC118964898 LOC106585477 other upstream 1142850 49347319 ~ 49387212 (+)
G516011 NA other upstream 1222922 49305125 ~ 49307140 (+)
LOC110526066 LOC106584148 other upstream 1283609 49233579 ~ 49260632 (+)
edf1 edf1 other upstream 1342739 49183291 ~ 49187334 (+)
LOC110526128 NA other downstream 376495 50911697 ~ 50922106 (+)
LOC110493840 LOC106605670 other downstream 1743160 52277694 ~ 52279409 (+)
G519603 NA other downstream 2116607 52651940 ~ 52655297 (+)
G521552 prmt3 other downstream 3390609 53925942 ~ 53955130 (+)

Expression


Co-expression Network