LOC118964908 (LOC106587027)


Basic Information

Item Value
gene id LOC118964908
gene name LOC106587027
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 50664006 ~ 50670797 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005052155.1
GGGCCCTGGAGGAAGTCTAATCCTATTGCTGAGAGACAAAAACACCATCCTCAGAGCCAAATGTCTCTCCAGAAATACCATGCCTGACCATCCAGGCAGCAGCCACCAGCTCACTCCATTAGCTACCACAATTAAAGTAGCCCTGGCTGGGCATCCCAGCTTATTAAATTGAAACGGATGGTGCATTAGTGGTAGCTGCAGGTCAGGGAAAGGTAACATTAGAGgtaatacacacagagagatgagacCCCTTCAGATCAGTTACTATTGCAGTTTTATATTTTGAGATGAAAAGAGTAAACCTGATGTAGACTGTCATGACTGGCCTGTTCGGGTCAGGTTACCGTAGACCATAATCCTACAGCGATATCTCTCACACCCACCagcgggagagagatagagagttatGGAGGTGGGGGGTTTCATTACACCTCCCACCCATTGTAAATCTTAAGGCAGCAGACAAAATCCCCTTTGTCCTCTCAGTATGGAGGGATGGAATGTATGATGGGCCTATGGAGAATCTACCTCTGAACAGTAACATGTAATAAATGGACTTTGGGACAATATGTTTCGTGgcaatagatggaatatgaaatgATATGAGTGTCAtttttgttatgttattaaaAGTTAAATGACGACGTTATAACGAAAACATTATAACTTGAAGAGTTTTCACACTCATGTACTTGAGGTTTGCATActgtacgttgtgtggaaaatgtccagatCAAAGAGAATGTATTTGTAAAGATgtaatgtgaagttagttgtctaaattgGATCTGAGTAAAATCCAGACCTTGCATCGTAGCTAGTTACGACCAGAGAACTTGCCCTAAAGGTGGAAACGCCAATTTCTGACCCGAGGGTATAAAACACATGAGTTCAGAGCTAATATAGCAGACTAAGCAACCACGAGCTCCAGCCAATGTCCGAATTAGTTGCATACCTAAAATTCAACACAAGGTTGAAGAAGACAAAGGAACCTGAAGAGGGTTAAACCAAGGCCTCATACCTTTTAAAGGGTTAATATATTGTGCTATgataaactctgtgtgtgtgtgtgttaaaacctGTTTCGAGTGTTGTGCCCTTCAGACACTATCAGAAGACTGAAACCGCCTACAGTACGTTCATACTCCTCCTGTCTGGGACCCACCATGGTTATCTGAGGTTCTGAAAAGACAAGGCTGCCGCAAGCCTGATGAAAACAGCCACCTGTCAGAAGATGCTTGGACTCGTTCACCTTGTTATGACTCTATACTTGTGATGGAAGGTCAAGTTTCTGTCAACCCACTTCTGAGCTTTTAATTGCTGATAAGATGGTTGCTGCTGTCAGGGGGAGGTtagatttattaaaatgttgttgtCAGGGAAACTCACGCAAGGAGGACTGGGAGAGGCTCCATGAGTTACAGGATGTCTTAGACATTTTGCACAACCTGGGGAGAGctattatgtactgtactctgtaccaacTTCTGCACACAATTGTATTACTAAAGGAGTATTCTAATACTTAAACAAAGAGTCTGTGTTTCCTTTCCAATACTAATGTATGTTTGATAATTATACAGACCTGATCATCTGTTGAAGAAATTGACCAACAAAACCTTTTTACAATCTATGCTACGGATGAGTAACTGTGTCTAAGAGGGTGAATTCAAGCAGGACCACCGGGTCACCACTCTCCAAGGAATCGTGTGTCTCAACTACTTTCATTCCCACACTGGAACCATCTCCACGGCTGATTAGCCGTCCTCTGAAGAACCCTTTTCAGAGCAAGGACGAGGAAACATTCCACTAAGAgtaaggacactgacatcgtgaggacaAACAGAGAGTTACACCTGGCAACCGAAGGTGTGCTGTCATCAGAGAAGTCAGAACGCGGTCCACGAAGAGGCACCCCATCAGAGACGTTCAAAACtgaattacatcattatattctgacccattaGAGCGGCAGTTCGGGGCAAGGGAACTGTTCTGTAGCTATTGTCCCAGGGAACGTGGAGAGCTATGTCGCTGTTCAACCCCTTGGTGTGGGCGCGAGAGTTGCTACGACAGAGCAGAAGCTCCTCCAGACTGGTGCTGGTGGTCGTGTGTGTTGCCCTGCTACTGGATAACATGCTGCTTACTGTTGTCGTGCCCATCATCCCAACGTTTTTACATGCCCTGGATCCCCCTACACAGGACACCTTCATCCAGCATGCAGAGGCTCTCTGAGGAGGGCTTCACATTGACCTCAGTCCACTCCTTATACGACAACACTTCCTACAGCATCAGCTGCTCTGAGAGCAACCTGTCTGAGGCCCTCCTCTTCAACATCTCCAGAAACTCCAGCCAGGTGAAAGGCAGCACATGCCAGGAGGACAGTGCCTTCTTGGACAAGGAGAATGTTCGTGTGGGACTCCTCTTTGCCTCCAAGGCTCTGGTGCAGCTTCTGATCAATCCCTTCGTGGGTCCCCTGACCAACAGGTTCATGTTCTGGCTTCACAGcaagtgtttttgtgtgtgtgacaaaatCACAGCTAGCTAGGACAGTGTTCAACTTtgcatttattgaaaatgattaAATACAATACACACTGGTTCTAATCTTATCCTTATCTTTTCCCTCAAGAGTTGGACATCACATACCAATGTTTGCTGTCTTTATCATCATGTTTGTTTCAACAATAAGTATGTGTGcctgacactgacacacacttctAACTTGTTACACACAGTTGATAATGAGATATAATTGAGGTAGTGATCTCTAATATACATACCATGACTGTTTCACAACTCCAATTGCGTCATCTTTAGATTTGATTTTATCTTACCACAGTGCAGTCATGGTAACGGAGGTTGTGTCCTGTGGTTGTCAGTGTTTGCCTTCTCATGTGCATGCTCCTTGTTGTTTTTTGCTCGCTCTCTTCAGGGAATTggttcctctttctcctcctgtgTTTCACAAAAACCTCCCCAGTGTTGTAATAGAATATGAACCATTTTGTCCGAGCATCTTAACGTCTAAGTGAAAAGCATGTCTTCTCCCGTAAGACTGGGAATGTTGGCCAGTGTGTACACAAGTAATGAGGAGAGAGCTATGGGGATCGCACTGGGTGGACTGGCCGTGGAGGTTCTCGTGTTACATCTCTGCCATCAAAGATTTCACCAGATAGTGTAGATGGCACTCCTTTGCTGACCCTACTGAAGGACCCCTACATTCTAATTTGTGCAGGCTCTCTGTGCTTCGCCAACATGGGAGTTGCCATTCTGGAGCCCACACTTCCCATCTGGATGATGCAGACCATGTGCTCTCCCAAATGACTGCTTGGTATGGCTTTCCTACCAGCAAGCATTTCTTACCTTATTGGCACCAATTTAACAAAACGTGAAGGTAGGTTTTCGTTGATCCTCTCCTGGTTACTTCTATTTGTTCCTATCTATCAATTATCAATATATAAAAGTCTAGTCACTCAGAAAATAAGTTCTCATGTAAGCCTATGGGGGTTGTGTGAATCAGTGTTagtgtctgtgtgaatgtgtgtgtgcagggacAGACTGCCCGAAATGCTGGATGTACTGGTCAATTTTTTGCCCAGTGGTTCTGTCTAACTTGTTATTTTTGCGCAAAATGATCATTATCTggtcc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005052155.1 True 3652 mRNA 0.44 7 50664006 50670797

Neighbor

gene id symbol gene type direction distance location
LOC110526111 zmiz2 coding upstream 33748 50541693 ~ 50630258 (+)
LOC110525036 NA coding upstream 128673 50530062 ~ 50535333 (+)
ogdha LOC106587025 coding upstream 150117 50443516 ~ 50513889 (+)
adam9 adam9 coding upstream 246024 50340035 ~ 50417982 (+)
fam160b2 LOC106587022 coding upstream 351233 50300082 ~ 50312773 (+)
LOC110526117 LOC106587027 coding downstream 40589 50711386 ~ 50719146 (+)
LOC118964907 NA coding downstream 48411 50719208 ~ 50743120 (+)
LOC110526112 LOC106587027 coding downstream 76484 50747281 ~ 50761069 (+)
tti2 tti2 coding downstream 113414 50784211 ~ 50791053 (+)
LOC110526125 LOC106587031 coding downstream 146931 50817728 ~ 50846599 (+)
G517000 NA non-coding upstream 127599 50519839 ~ 50536407 (+)
G516964 NA non-coding upstream 157708 50473529 ~ 50506298 (+)
G516933 NA non-coding upstream 230009 50433732 ~ 50433997 (+)
G516918 NA non-coding upstream 278949 50384006 ~ 50385057 (+)
LOC110526093 dmtn non-coding upstream 455542 50106792 ~ 50208464 (+)
G516990 NA non-coding downstream 19105 50689902 ~ 50699685 (+)
G517068 NA non-coding downstream 91533 50762330 ~ 50763117 (+)
G517069 NA non-coding downstream 92919 50763716 ~ 50764117 (+)
G517101 NA non-coding downstream 101727 50772524 ~ 50773077 (+)
G517102 NA non-coding downstream 102549 50773346 ~ 50773606 (+)
barhl1a barhl1 other upstream 912257 49748788 ~ 49753260 (+)
LOC118964898 LOC106585477 other upstream 1276794 49347319 ~ 49387212 (+)
G516011 NA other upstream 1356866 49305125 ~ 49307140 (+)
LOC110526066 LOC106584148 other upstream 1417553 49233579 ~ 49260632 (+)
edf1 edf1 other upstream 1476683 49183291 ~ 49187334 (+)
LOC110526128 NA other downstream 241031 50911697 ~ 50922106 (+)
LOC110493840 LOC106605670 other downstream 1607696 52277694 ~ 52279409 (+)
G519603 NA other downstream 1981143 52651940 ~ 52655297 (+)
G521552 prmt3 other downstream 3255145 53925942 ~ 53955130 (+)

Expression


Co-expression Network