LOC110526117 (LOC106587027)


Basic Information

Item Value
gene id LOC110526117
gene name LOC106587027
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 50711386 ~ 50719146 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005052154.1
actgtgtttcctctgacacattggtgtggctggcttctgggttaagcaagcagtgtgtcaagaagcagtgcaacTTTGCAGGGTCATGCTTGgggggatgcatggctctcgacctttgcctctcccaagtccgtactggagttgcagagatgggacaagactaactaccaattggacatCACTAAAAAGTAAACAAAAAATGTTGGACTCTAGGGATGCTCGATACTTTTCTATAGGCCTAATTAAAATTGATGAAGGGTGAGGCTAATCAATCGTATAAATGTTCATTTTAGTTTGTTCTGTAATCATTAAAGCACTCCAAATAATGAATGGAATATGACTCAAACCTGAATTGTAATGTTACCCATTGCTTTGTTCCCACCAGTTATGCATGGTAACCAAAGGATATATGATGCGTCATAATAATGCCTGAAGGTAAGAGTAAGCTATATGCAAACCTGATGTTCAGAAATGATCAACTTAATGCATATTCACCTCTATTACTGGAAAGTATTGTGATTTTCATAGCAGATTGGTGTAACGTAATATGCTGGGAGTCAGGggcaggtgcagaaggtgagtttaataatgaaTCGAAGCAGATTGACAAAATGTGAGAAGCGTACAGAACGTGAGAGAAAACAATACTACCTAGTAACTGCTGTcaactgagggctaaataaagggtGAGTAATCAAGGAGATAATGatgaccaggtgtgcgtaatgattgtTGCCAGGGCCGGTGGTTAGCAGACCGGCGACGCCAAGcgctggagagagggagcggaCACTTGTTGTTGACTAGCATGTTCTGTAAGGAGAAAGGACGGAGCTGTGCGATCAAACGTATGTTTGAAATATGGACCAGTCCTTATTTACAGTTGAGCACCACAGCAGGCAAGCAGGCTACACTTGACCTTGATcagaacagaacacagcaggCAGGGCTCTGAGAGGGCCCTGGAGGAAGTCTAATCCTATTGCTGAGAGACAAAAACACCATCCTCAGAGCCAAATGTCTCTCCAGAAATACCATGCCTGACCATCCAGGCAGCAGCCACCAGCTCACTCCATTAGCTACCACAATTAAAGTAGCCCTGGCTGGGCATCCCAGCTTATTAAATTGAAACGGATGGTGCATTAGTGGTAGCTGCAGGTCAGGGAAAGGTAACATTAGAGgtaatacacacagagagatgagacCCCTTCAGATCAGTTACTATTGCAGTTTTATATTTTGAGATGAAAAGAGTAAACCTGATGTACACTGTCATGACTGGCCTGTTCGGGTCAGGTTACCGTAGACCATAATCCTACAGCGATATCTCTCACACCCACCagcgggagagagatagagagttatGGAGGTGGGGGGTTTCATTACACCTCCCACCCATTGTAAATCTTAAGGCAGCAGACAAAATCCCCTTTGTCCTCTCAGTATGGAGGGATGGAATGTATGATGGGCCTATGGAGAATCTACCTCTGAACAGTAACATGTAATAAATGGACTTTGGGACAATATGTTTCGTGgcaatagatggaatatgaaatgATATGAGTGTCAtttttgttatgttattaaaAGTTAAATGACGACGTTATAACGAAAACATTATAACTTGAAGAGTTTTCACACTCATGTACTTGAGGTTTGCATActgtacgttgtgtggaaaatgtccagatCAAAGAGAATGTATTTGTAAAGATgtaatgtgaagttagttgtctaaattgGATCTGAGTAAAATCCAGACCTTGCATCGTAGCTAGTTACGACCAGAGAACTTGCCCTAAAGGTGGAAACGCCAATTTCTGACCCGAGGGTATAAAACACATGAGTTCAGAGCTAATATAGCAGACTAAGCAACCACGAGCTCCAGCCAATGTCCGAATTAGTTGCATACCTAAAATTCAACACAAGGTTGAAGAAGACAAAGGAACCTGAAGAGGGTTAAACCAAGGCCTCATACCTTTTAAAGGGTTAATATATTGTGCTATgataaactctgtgtgtgtgtgtgttaaaacctGTTTCGAGTGTTGTGCCCTTCAGACACTATCAGAAGACTGAAACCGCCTACAGTACGTTCATACTCCTCCTGTCTGGGACCCACCATGGTTATCTGAGGTTCTGAAAACACAAGGCTGCCGCAAGCCTGATGAAAACAGCCACCTGTCAGAAGATGCTTGGACTCGTTCACCTTGTTATGACTCTATACTTGTGATGGAAGGTCAAGTTTCTGTCAACCCACTTCTGAGCTTTTAATTGCTGATAAGATGGTTGCTGCTGTCAGGGGGAGGTtagatttattaaaatgttgttgtCAGGGAAACTCACGCAAGGAGGACTGGGAGAGGCTCCATGAGTTACAGGATGTCTTAGACATTTTGCACAACCTGGGGAGAGctattatgtactgtactctgtaccaacTTCTGCACACAATTGTATTACTATAGGAGTATTCTAATACTTAAACAACGAGTCTGTGTTTCCTTTCCAATACTAATGTATGTTTGATAATTATACAGACCTGATCATCTGTTGAAGAAATTGACCAACAAAACCTTTTTACAATCTATGCTACGGATGAGTAACTGTGTCTAAGAGGGTGAATTCAAGCAGGACCACCGGGTCACCACTCTCCAAGGAATCGTGTGTCTCAACTACTTTCATTCCCACACTGGAACCATCTCCACGGCTGATTAGCCGTCCTCTGAAGAACCCTTTTCAGAGCAAGGACGAGGAAACATTCCACTAAGAgtaaggacactgacatcgtgaggacaAACAGAGAGTTACACCTGGCAACCGAAGGTGTGCTGTCATCAGAGAAGTCAGAACGCGGTCCACGAAGAGGCACCCCATCAGAGACGTTCAAAACtgaattacatcattatattctgacccattaGAGCGGCAGTTCGGGGCAAGGGAACTGTTCTGTAGCTATTGTCCCAGGGAACGTGGAGAGCTATGTCGCTGTTCAACCCCTTGGTGTGGGCGCGAGAGTTGCTACGACAGAGCAGAAGCTCCTCCAGACTGGTGCTGGTGGTCGTGTGTGTTGCCCTGCTACTGGATAACATGCTGCTTACTGTTGTCGTGCCCATCATCCCAACGTTTTTACATGCCCTGGATCCCCCTACACAGGACACCTTCATCCAGCATGCAGAGGCTCTCTGAGGAGGGCTTCACATTGACCTCAGTCCACTCCTTATACGACAACACTTCCTACAGCATCAGCTGCTCTGAGAGCAACCTGTCTGAGGCCCTCCTCTTCAACATCTCCAGAAACTCCAGCCAGGTGAAAGGCAGCACATGCCAGGAGGACAGTGCCTTCTTGGACAAGGAGAATGTTCGTGTGGGACTCCTCTTTGCCTCCAAGGCTCTGGTGCAGCTTCTGATCAATCCCTTCGTGGGTCCCCTGACCAACAGGTTCATGTTCTGGCTTCACAGcaagtgtttttgtgtgtgtgacaaaatCACAGCTAGCTAGGACAGTGTTCAACTTtgcatttattgaaaatgattaAATACAATACACACTGGTTCTAATCTTATCCTTATCTTTTCCCTCAAGAGTTGGACATCACATACCAATGTTTGCTGTCTTTATCATCATGTTTGTTTCAACAATAAGTATGTGTGcctgacactgacacacacttctAACTTGTTACACACAGTTGATAATGAGATATAATTGAGGTAGTGATCTCTAATATACATACCATGACTGTTTCACAACTCCAATTGCGTCATCTTTAGATTTGATTTTATCTTACCACAGTGCAGTCATGGTAACGGAGGTTGTGTCCTGTGGTTGTCAGTGTTTGCCTTCTCATGTGCATGCTCCTTGTTGTTTTTTGCTCGCTCTCTTCAGGGAATTggttcctctttctcctcctgtgTTTCACAAAAACCTCCCCAGTGTTGTAATAGAATATGAACCATTTTGTCCGAGCATCTTAACGTCTAAGTGAAAAGCATGTCTTCTCCCGTAAGACTGGGAATGTTGGCCAGTGTGTACACAAGTAATGAGGAGAGAGGCGTAGCTATGGGGATCGCACTGGGTGGACTGGCCGTGGAGGTTCTCGTGTTACATCTCTGCCATCAAAGATTTCACCAGATAGTGTAGATGGCACTCCTTTGCTGACCCTACTGAAGGACCCCTACATTCTAATTTGTGCAGGCTCTCTGTGCTTCGCCAACATGGGAGTTGCCATTCTGGAGCCCACACTTCCCATCTGGATGATGCAGACCATGTGCTCTCCCAAATGACTGCTTGGTATGGCTTTCCTACCAGCAAGCATTTCTTACCTTATTGGCACCAATTTAACAAAACGTGAAGGTAGGTTTTCGTTGATCCTCTCCTGGTTACTTCTATTTGTTCCTATCTATCAATTATCAATATATAAAAGTCTAGTCACTCAGAAAATAAGTTCTCATGTAAGCCTATGGGGGTTGTGTGAATCAGTGTTagtgtctgtgtgaatgtgtgtgtgcaggggcaGACTGCCCGA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005052154.1 True 4532 mRNA 0.44 7 50711386 50719146

Neighbor

gene id symbol gene type direction distance location
LOC118964908 LOC106587027 coding upstream 40589 50664006 ~ 50670797 (+)
LOC110526111 zmiz2 coding upstream 81128 50541693 ~ 50630258 (+)
LOC110525036 NA coding upstream 176053 50530062 ~ 50535333 (+)
ogdha LOC106587025 coding upstream 197497 50443516 ~ 50513889 (+)
adam9 adam9 coding upstream 293404 50340035 ~ 50417982 (+)
LOC118964907 NA coding downstream 62 50719208 ~ 50743120 (+)
LOC110526112 LOC106587027 coding downstream 28135 50747281 ~ 50761069 (+)
tti2 tti2 coding downstream 65065 50784211 ~ 50791053 (+)
LOC110526125 LOC106587031 coding downstream 98582 50817728 ~ 50846599 (+)
LOC110526127 LOC106586990 coding downstream 179950 50899096 ~ 50901094 (+)
G516990 NA non-coding upstream 11701 50689902 ~ 50699685 (+)
G517000 NA non-coding upstream 174979 50519839 ~ 50536407 (+)
G516964 NA non-coding upstream 205088 50473529 ~ 50506298 (+)
G516933 NA non-coding upstream 277389 50433732 ~ 50433997 (+)
G516918 NA non-coding upstream 326329 50384006 ~ 50385057 (+)
G517068 NA non-coding downstream 43184 50762330 ~ 50763117 (+)
G517069 NA non-coding downstream 44570 50763716 ~ 50764117 (+)
G517101 NA non-coding downstream 53378 50772524 ~ 50773077 (+)
G517102 NA non-coding downstream 54200 50773346 ~ 50773606 (+)
G517108 NA non-coding downstream 62803 50781949 ~ 50782422 (+)
barhl1a barhl1 other upstream 959637 49748788 ~ 49753260 (+)
LOC118964898 LOC106585477 other upstream 1324174 49347319 ~ 49387212 (+)
G516011 NA other upstream 1404246 49305125 ~ 49307140 (+)
LOC110526066 LOC106584148 other upstream 1464933 49233579 ~ 49260632 (+)
edf1 edf1 other upstream 1524063 49183291 ~ 49187334 (+)
LOC110526128 NA other downstream 192682 50911697 ~ 50922106 (+)
LOC110493840 LOC106605670 other downstream 1559347 52277694 ~ 52279409 (+)
G519603 NA other downstream 1932794 52651940 ~ 52655297 (+)
G521552 prmt3 other downstream 3206796 53925942 ~ 53955130 (+)

Expression


Co-expression Network