LOC118964907


Basic Information

Item Value
gene id LOC118964907
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 50719208 ~ 50743120 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036980393.1
cattcctcctctgtgtgtgtgtgtgagagagagtgttgtTGATGATTCCCATTAAGGAGGAGGTATTTATCTCTCCACAGGTGGCTGTGCTCCATGTTTGGAATGTTTATTGTTGGCATCAGTCTTATAGTCACCCGTGACTATTATTTCCTATGCACACTTTTGGCTCTGCTAGATCACAAGGTAGTTCAATGAAGAATCATCATATTTCTTGTCCTATAGGTTCATTTTGCAAAGCACATCTATGGTCTTATTGGTCCAAATATAGGCCTGGGGTTTGCTATTGGTGGGTGCCGATGTGTTATGTAGAAACACATATGAATGATGGTCTGAAGcatcagaaagacagacagacagatataaaTATAGCCACGGCCCAGCCCAAGTGttgacccaagatcagcgtccAGGGGCAACTTAATCCTACTTTGTAGTGGATATTGTCTGCTATAGAATTACAGTGGTCTCAGGATGACTGCAAGCCAGGGGTTGAGACACATACGCCTTATGGGAGTTGCCTGCAAGACCCATGTATTGTGCTGAAAAATAAACCAAAATGGTGGCCTCTGTGGGTCTGAGTGGATACTGCACCCCCGGCTGGCTATAGGAGTGAGTGGCTTATGTCATCTTCAACAAACGGAAGTTCTTCGACTTTGCAACACTGCTCAATATGGACCTTATTTATACGTTATTATAACCATGTAACCCAGGGAAAACAGAGAACATCAAAGTGACTTCTGTTTCCTTTATCTCACCCGCCATAACATGCCCACACTAACCTAGAGGACTTTTCAGATGGGTGGCGGTGCGGGCTACAACACACAGTTCATGCAACACCCGGGCCCCAGAGGTCCCCCTGGCACGTCCCTGGCAGGGATGGGTCCTGCTCGTTTTCCGTCAATGGGGCCCCTCAGGGCCAGAGGATGCCCCAACACCCAGGCTACCCCAGGGCTCAGCAGGGACACACTAGGCCGCAGCAGGGACTCAAATGCCCATACAACGCTGAAGTGAGTCTCCCTCAGCGAATGACTTCACATATTTTCTAATGCAAACCATTTGTAGACTGACAGCCATAAGTTGAAAATATACAGTGTGAATTATAATACTATGTTAACACCTacgtacattttatttattttattaagcTTGAGCTTTATATTGAGTTTAACCTAATGTCGTTTTTTGTTCGTGTCCAACTTCACCAACATATCTGTCGAACCCctattcctgtctgtctgttgcacAGCCTGCTGGGCTGTACTGTTTTCACACCCTCCctcctatgtgtgtgtatgccctGGCTGGCTACTGTAATAATACCCAAACTAGAGTCCAGAGTACAAACCAGTGTTGTGCAGTTTGCCTTTCCATCGGAGCAGTTCAATGGACAATGAACTAGCGGCTGGGGGAGTCAGTGGAGTTTACAACATCTTCAACCAGGCTGCagtcaatgggagacagaCTGGGCAGGGTGATGCCTGGTTATCCAAGCTCTCCCCTTCTTGGAAACcccacccctcccataaccccAGGCAGTGTGATGCCCCCTACATGTCTCCTGGCCATGACGTCAAGCCCACTTACCTGCCTGACATCAAGCCAAACACGAACTCCCTACCCCCACCACTCCCCACAGGCCTCTCACAGACAGGGGTCCTTGGATGGACAGCTTGCACAGCTTCCCCACGCACGGCGTTGGATCAAGGGTGACCTCGTTGAGGAGGAGATTCAGGAGCCCATCTACATAGCCTGTAATATTTTTGAAAAGGGACACTTTGTTAAATGggtagtgtcgtgtctttggcatcattaaaactgaagacttatttatca
>XM_036980394.1
GGTGGCTGTGCTCCATGTTTGGAATGTTTATTGTTGGCATCAGTCTTATAGTCACCCGTGACTATTATTTCCTATGCACACTTTTGGCTCTGCTAGATCACAAGGTAGTTCAATGAAGAATCATCATATTTCTTGTCCTATAGGTTCATTTTGCAAAGCACATCTATGGTCTTATTGGTCCAAATATAGGCCTGGGGTTTGCTATTGGTGGGTGCCGATGTGTTATGTAGAAACACATATGAATGATGGTCTGAAGcatcagaaagacagacagacagatataaaTATAGCCACGGCCCAGCCCAAGTGttgacccaagatcagcgtccAGGGGCAACTTAATCCTACTTTGTAGTGGATATTGTCTGCTATAGAATTACAGTGGTCTCAGGATGACTGCAAGCCAGGGGTTGAGACACATACGCCTTATGGGAGTTGCCTGCAAGACCCATGTATTGTGCTGAAAAATAAACCAAAATGGTGGCCTCTGTGGGTCTGAGTGGATACTGCACCCCCGGCTGGCTATAGGAGTGAGTGGCTTATGTCATCTTCAACAAACGGAAGTTCTTCGACTTTGCAACACTGCTCAATATGGACCTTATTTATACGTTATTATAACCATGTAACCCAGGGAAAACAGAGAACATCAAAGTGACTTCTGTTTCCTTTATCTCACCCGCCATAACATGCCCACACTAACCTAGAGGACTTTTCAGATGGGTGGCGGTGCGGGCTACAACACACAGTTCATGCAACACCCGGGCCCCAGAGGTCCCCCTGGCACGTCCCTGGCAGGGATGGGTCCTGCTCGTTTTCCGTCAATGGGGCCCCTCAGGGCCAGAGGATGCCCCAACACCCAGGCTACCCCAGGGCTCAGCAGGGACACACTAGGCCGCAGCAGGGACTCAAATGCCCATACAACGCTGAAGTGAGTCTCCCTCAGCGAATGACTTCACATATTTTCTAATGCAAACCATTTGTAGACTGACAGCCATAAGTTGAAAATATACAGTGTGAATTATAATACTATGTTAACACCTacgtacattttatttattttattaagcTTGAGCTTTATATTGAGTTTAACCTAATGTCGTTTTTTGTTCGTGTCCAACTTCACCAACATATCTGTCGAACCCctattcctgtctgtctgttgcacAGCCTGCTGGGCTGTACTGTTTTCACACCCTCCctcctatgtgtgtgtatgccctGGCTGGCTACTGTAATAATACCCAAACTAGAGTCCAGAGTACAAACCAGTGTTGTGCAGTTTGCCTTTCCATCGGAGCAGTTCAATGGACAATGAACTAGCGGCTGGGGGAGTCAGTGGAGTTTACAACATCTTCAACCAGGCTGCagtcaatgggagacagaCTGGGCAGGGTGATGCCTGGTTATCCAAGCTCTCCCCTTCTTGGAAACcccacccctcccataaccccAGGCAGTGTGATGCCCCCTACATGTCTCCTGGCCATGACGTCAAGCCCACTTACCTGCCTGACATCAAGCCAAACACGAACTCCCTACCCCCACCACTCCCCACAGCACTCACCGCTGACAGACTGCGTTCTTGATCAGGTAAAGGTGTCCTGTGACGGCGAGAAGATGTATCTGCCCTGCGACGTGTGTTCACATTATTCTGTACATACACCGTTCCACTGTGCGGGTCCACCTGTATTACGAAGAAAAGCATTGGCCTAATTCAATCTGAAAAAAGAGACACTTGAATGACACTTGAATCACTTGAATCCACACAGCTGCAAAACGTAGCCTAAGCATCACTGGTCAATCCACTGCAGGTGCTCTCACCTGTTCCAATGGATCCATCGCTTCTTTAGAGGATCCGATTAAATTGGAGTCGAGGCTGCGCACAAAACAATGAGAACACATGAAAAGCAAAGCGATCGTAGGTGTCCACATTGTTGACCAAACAAAATGACACATAATATCCAGCCGTTGTAAATAGCAAAATCTCTAATACAGAAGACGAACCCACTTTTCTCTGAGCAGAGCAGGTGTATCCTGGTACTTATAACCCTACACCGGCCCACCCGCACATTGTAAAGCTTCTACTTCTTTCATTGCACACCAAAACCCACACCAATCCCTCCTCCCAACACACAGAGGctctttgaaatgtatttttaataaatAAGAAATATTCTTTGAACAAACCGCATCAGTCGACATGGATGAGAGCTACATCCTGGCCGACCGGAACATATGGTAAGCTGCTCTCTTTAGAACTAGACTAGTTTAGGCTATAGGGGGAAATGTCGTAAAATGAAGAATTGTCAACCGTTTGATGGTCTGAGATCCCTATCTATCACtcctgtaataataataattaggatATTAACTGTCTAAAATAACGTAGTAGGCTATAATAAATGTGTTACCGCCACCTTA
>TU586434
CAACTTCACCAACATATCTGTCGAACCCctattcctgtctgtctgttgcacAGCCTGCTGGGCTGTACTGTTTTCACACCCTCCctcctatgtgtgtgtatgccctGGCTGGCTACTGTAATAATACCCAAACTAGAGTCCAGAGTACAAACCAGTGTTGTGCAGTTTGCCTTTCCATCGGAGCAGTTCAATGGACAATGAACTAGCGGCTGGGGGAGTCAGTGGAGTTTACAACATCTTCAACCAGGCTGCagtcaatgggagacagaCTGGGCAGGGTGATGCCTGGTTATCCAAGCTCTCCCCTTCTTGGAAACcccacccctcccataaccccAGGCAGTGTGATGCCCCCTACATGTCTCCTGGCCATGACGTCAAGCCCACTTACCTGCCTGACATCAAGCCAAACACGAACTCCCTACCCCCACCACTCCCCACAGGCCTCTCACAGACAGGGGTCCTTGGATGGACAGCTTGCACAGCTTCCCCACGCACGGCGTTGGATCAAGGGTGACCTCGTTGAGGAGGAGATTCAGGAGCCCATCTACATAGCCTGTAATATTTTTGAAAAGGGACACTTTGTTAAATGggtagtgtcgtgtctttggcatcattaaaactgaagacttatttatcaaataactctctgtaattattattgcgcgattaaactgattaatcatgtaactgtaattaaataggaagtcagggcaccaaggAATATATTCAGATtataaagttataattttcctagaataactttcagatattttcatatctgatcaattagtcttcgaatgtATGAATTATTTTTTACCTCACatcagtctcattccaaacgtcgtaaattgttgcagaaagtccgggtagccaatgtgtgggggcaccgattagtcgggctaattgaggtagtatgttcatgaatgtatagttaaagtgtctatgcatatatgataaacatagagtagcagc

Function

NR:

description
PREDICTED: uncharacterized protein LOC106586976

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036980393.1 False 1833 mRNA 0.48 3 50719208 50734901
XM_036980394.1 False 2421 mRNA 0.46 3 50719287 50743120
TU586434 True 975 TUCP 0.45 3 50720401 50735236

Neighbor

gene id symbol gene type direction distance location
LOC110526117 LOC106587027 coding upstream 62 50711386 ~ 50719146 (+)
LOC118964908 LOC106587027 coding upstream 48411 50664006 ~ 50670797 (+)
LOC110526111 zmiz2 coding upstream 88950 50541693 ~ 50630258 (+)
LOC110525036 NA coding upstream 183875 50530062 ~ 50535333 (+)
ogdha LOC106587025 coding upstream 205319 50443516 ~ 50513889 (+)
LOC110526112 LOC106587027 coding downstream 4161 50747281 ~ 50761069 (+)
tti2 tti2 coding downstream 41091 50784211 ~ 50791053 (+)
LOC110526125 LOC106587031 coding downstream 74608 50817728 ~ 50846599 (+)
LOC110526127 LOC106586990 coding downstream 155976 50899096 ~ 50901094 (+)
LOC110526128 NA coding downstream 168577 50911697 ~ 50922106 (+)
G516990 NA non-coding upstream 19523 50689902 ~ 50699685 (+)
G517000 NA non-coding upstream 182801 50519839 ~ 50536407 (+)
G516964 NA non-coding upstream 212910 50473529 ~ 50506298 (+)
G516933 NA non-coding upstream 285211 50433732 ~ 50433997 (+)
G516918 NA non-coding upstream 334151 50384006 ~ 50385057 (+)
G517068 NA non-coding downstream 19210 50762330 ~ 50763117 (+)
G517069 NA non-coding downstream 20596 50763716 ~ 50764117 (+)
G517101 NA non-coding downstream 29404 50772524 ~ 50773077 (+)
G517102 NA non-coding downstream 30226 50773346 ~ 50773606 (+)
G517108 NA non-coding downstream 38829 50781949 ~ 50782422 (+)
barhl1a barhl1 other upstream 967459 49748788 ~ 49753260 (+)
LOC118964898 LOC106585477 other upstream 1331996 49347319 ~ 49387212 (+)
G516011 NA other upstream 1412068 49305125 ~ 49307140 (+)
LOC110526066 LOC106584148 other upstream 1472755 49233579 ~ 49260632 (+)
edf1 edf1 other upstream 1531885 49183291 ~ 49187334 (+)
LOC110493840 LOC106605670 other downstream 1535373 52277694 ~ 52279409 (+)
G519603 NA other downstream 1908820 52651940 ~ 52655297 (+)
G521552 prmt3 other downstream 3182822 53925942 ~ 53955130 (+)
G521914 NA other downstream 3526805 54269925 ~ 54270259 (+)

Expression


Co-expression Network