LOC110526128


Basic Information

Item Value
gene id LOC110526128
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 50911697 ~ 50922106 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005052159.1
CATCACTTGTCTGCACTCTATTCCTCCACCCATGTCTTCACACATCTGCTAACTGCCACGTAGACAGAGGTTGTACTTTTCTATAAAAGCTGAAACCCAACTCCGTTTGTTGGGCTCCTAACTCTGCACCATTGAGTGATTTGTTTACCGCTTCAGATTTAAAAGTCTTATAATAAAGTTGATGTTTTAAGAATCTACAGTCTCTCTTCATTTGGGTTAGAATTTCCACAACAATTCTTGGAGACAAGGATGAGATGTCTAATTCCGCTTGCTGATCGTTCCCAGGGACACCAACGTTAACTGTGCATAGAGGCTAGGTAAGACGTGGCTCAGGGAGCCTACACTCCGATTGAGAGGAGCAGAAGGAAACTGCCTCGGACCCGGCAGGGAGTGAGGCGCCATCCCGAAAATACAGAGTTATGGGGCCGGATCGAGGAACGGGAATGCAGACGCGCTGTCCCGACAGGACCAAGATGGTGCGTCTGGAGCCAGACCCTCCGGTGAGGTCCTGGGGGGGAAAGTATGTGGAAGgcccaccagagggcaggctgggctcacggatagtagcccaacaaggcatgggagacaagGGTAAAAGCTGCTTTAGCTGgaccactccacaaacttcagCCAGGCGATTGGGTGGTCATCAAGGACCACCGCAGAAAGACTAGGCACCAACAGCGCTGGACTGGTCCATTCCAGGTGCTCCAGACAACACAGACAGTGGTGAAGGATGCAGAGGTCTACTTAGGTTCACGTCAGCCACTGCAGGGAGGTTCCCCACAACCCAGGTGACGAATTGTCGTTGGCGACTCTAGTGGCCACGGGAAGACCAGGACTGGACTCTAAGCATAATTTCGTACACTAGAGTTGAGGAACAATAGGAAAGTAATTCagttttgaaagttgataaacttaacctcacttttgaaaaaatggcccttgaatgttttggtaaacctactggagagctcttatttgtctacacccattcagcattgttcacaccctcttaagccttaaccCCGCTCAACATTTTAAGGATtaacatgtgaggccatgtactaaacaaccaaagatttcaagaatagaggctggtttatactactggTGTATTTGTACATTGTTATGGGGATTAACATGGTTAAGGTAATGGTAAGATAATGACTAAATGATTAATACGTTCCAATTCATGTTAAGGCCATAACTAACAGTATTCCACCCTGTCACTGTATAATGGagtaaaatgtgtttgaatcatAAGACTAGAATTCATGATTGTATGTGCATAAAAAAGAGGAACTGTTACCAGACAAGAGACTGTGGCAGACAACTTGTGACAATTGTGACAACTGTGAAACTGATAACAGGGAAGGAGGTCTCCCCACCCAGGAAGGGGAGAAACCGTTGGGCTTGCAGTAGATTGTGTAACATGTTGCAGGATATGATAAGCAAGGTATGTGTTGGAGAAACCTTGTAAACAGCATTGACAGTGTTAGAGGGGCATTTATATTACCAAATGTGAGGTATAAAAGGCTATgtgcattgtatgatttttaacgCTCTCGTGAATAAACCTTCTGACTATTATAA
>TU586542
TTGAGTGATTTGTTTACCGCTTCAGATTTAAAAGTCTTATAATAAAGTTGATGTTTTAAGAATCTACAGTCTCTCTTCATTTGGGTTAGAATTTCCACAACAATTCTTGGAGACAAGGATGAGATGTCTAATTCCGCTTGCTGATCGTTCCCAGGGACACCAACGTTAACTGTGCATAGAGGCTAGGTAAGACGTGGCTCAGGGAGCCTACACTCCGATTGAGAGGAGCAGAAGGAAACTGCCTCGGACCCGGCAGGGAGTGAGGCGCCATCCCGAAAATACAGAGTTATGGGGCCGGATCGAGGAACGGGAATGCAGACGCGCTGTCCCGACAGGACCAAGATGGTGCGTCTGGAGCCAGACCCTCCGGTGAGGTCCTGGGGGGGAAAGTATGTGGAAGgcccaccagagggcaggctgggctcacggatagtagcccaacaaggcatgggagacaaggtaaccagaggcaattgagcacagctgacggtactaatgacatattctccttcccctataaaagagagagaatggaaccagtagagagaggaggggaacactatctctggaagatggccaccgagacagaggagctatccaggaagaaccactaagacggtgacaatcCTGTGacttttgttgtagtttaaagataatcctATCGCGTTcctgtttcatctggagaagatgtatgtttttccttggaaggttttcattgattatgttggagtgtttgtgttgaccaaatgccctcaatagagaactgtgttcaatcaagaaaacccactcctgactcgtttattccaccttcccgctttagagtgacgcccaattacttggtccgcCCACATTAGTAACAGACCAAATGGTAAGTTACTGTCCTGCACTTAACAATGTTCAGAAATCTATTTTTACCCAGGGTAAAAGCTGCTTTAGCTGgaccactccacaaacttcagCCAGGCGATTGGGTGGTCATCAAGGACCACCGCAGAAAGACTAGGCACCAACAGCGCTGGACTGGTCCATTCCAGGTGCTCCAGACAACACAGACAGTGGTGAAGGATGCAGAGGTCTACTTAGGTTCACGTCAGCCACTGCAGGGAGGTTCCCCACAACCCAGGTGACGAATTGTCGTTGGCGACTCTAGTGGCCACGGGAAGACCAGGACTGGACTCTAAGCATAATTTCGTACACTAGAGTTGAGGAACAATAGGAAAGTAATTCagttttgaaagttgataaacttaacctcacttttgaaaaaatggcccttgaatgttttggtaaacctactggagagctcttatttgtctacacccattcagcattgttcacaccctcttaagccttaaccCCGCTCAACATTTTAAGGATtaacatgtgaggccatgtactaaacaaccaaagatttcaagaatagaggctggtttatactactggTGTATTTGTACATTGTTATGGGGATTAACATGGTTAAGGTAATGGTAAGATAATGACTAAATGATTAATACGTTCCAATTCATGTTAAGGCCATAACTAACAGTATTCCACCCTGTCACTGTATAATGGagtaaaatgtgtttgaatcatAAGACTAGAATTCATGATTGTATGTGCATAAAAAAGAGGAACTGTTACCAGACAAGAGACTGTGGCAGACAACTTGTGACAATTGTGACAACTGTGAAACTGATAACAGGGAAGGAGGTCTCCCCACCCAGGAAGGGGAGAAACCGTTGGGCTTGCAGTAGATTGTGTAACATGTTGCAGGATATGATAAGCAAGGTATGTGTTGGAGAAACCTTGTAAACAGCATTGACAGTGTTAGAGGGGCATTTATATTACCAAATGTGAGGTATAAAAGGCTATgtgcattgtatgatttttaacgCTCTCGTGAATAAACCTTCTGA
>TU586543
TTGAGTGATTTGTTTACCGCTTCAGATTTAAAAGTCTTATAATAAAGTTGATGTTTTAAGAATCTACAGTCTCTCTTCATTTGGGTTAGAATTTCCACAACAATTCTTGGAGACAAGGATGAGATGTCTAATTCCGCTTGCTGATCGTTCCCAGGGACACCAACGTTAACTGTGCATAGAGGCTAGGTAAGACGTGGCTCAGGGAGCCTACACTCCGATTGAGAGGAGCAGAAGGAAACTGCCTCGGACCCGGCAGGGAGTGAGGCGCCATCCCGAAAATACAGAGTTATGGGGCCGGATCGAGGAACGGGAATGCAGACGCGCTGTCCCGACAGGACCAAGATGGTGCGTCTGGAGCCAGACCCTCCGGTGAGGTCCTGGGGGGGAAAGTATGTGGAAGgcccaccagagggcaggctgggctcacggatagtagcccaacaaggcatgggagacaagGGTAAAAGCTGCTTTAGCTGgaccactccacaaacttcagCCAGGCGATTGGGTGGTCATCAAGGACCACCGCAGAAAGACTAGGCACCAACAGCGCTGGACTGGTCCATTCCAGGTGCTCCAGACAACACAGACAGTGGTGAAGGATGCAGAGGTCTACTTAGGTTCACGTCAGCCACTGCAGGGAGGTTCCCCACAACCCAGGTGACGAATTGTCGTTGGCGACTCTAGTGGCCACGGGAAGACCAGGACTGGACTCTAAGCATAATTTCGTACACTAGAGTTGAGGAACAATAGGAAAGTAATTCagttttgaaagttgataaacttaacctcacttttgaaaaaatggcccttgaatgttttggtaaacctactggagagctcttatttgtctacacccattcagcattgttcacaccctcttaagccttaaccCCGCTCAACATTTTAAGGATtaacatgtgaggccatgtactaaacaaccaaagatttcaagaatagaggctggtttatactactggTGTATTTGTACATTGTTATGGGGATTAACATGGTTAAGGTAATGGTAAGATAATGACTAAATGATTAATACGTTCCAATTCATGTTAAGGCCATAACTAACAGTATTCCACCCTGTCACTGTATAATGGagtaaaatgtgtttgaatcatAAGACTAGAATTCATGATTGTATGTGCATAAAAAAGAGGAACTGTTACCAGACAAGAGACTGTGGCAGACAACTTGTGACAATTGTGACAACTGTGAAACTGATAACAGGGAAGGAGGTCTCCCCACCCAGGAAGGGGAGAAACCGTTGGGCTTGCAGTAGATTGTGTAACATGTTGCAGGATATGATAAGCAAGGTATGTGTTGGAGAAACCTTGTAAACAGCATTGACAGTGTTAGAGGGGCATTTATATTACCAAATGTGAGGTATAAAAGGCTATgtgcattgtatgatttttaacgCTCTCGTGAATAAACCTTCTGA

Function

NR:

description
protein NYNRIN-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005052159.1 False 1596 mRNA 0.45 3 50911697 50922106
TU586542 False 1916 lncRNA 0.45 2 50911828 50922097
TU586543 True 1456 TUCP 0.45 3 50911828 50922097

Neighbor

gene id symbol gene type direction distance location
LOC110526127 LOC106586990 coding upstream 10603 50899096 ~ 50901094 (+)
LOC110526125 LOC106587031 coding upstream 65098 50817728 ~ 50846599 (+)
tti2 tti2 coding upstream 120644 50784211 ~ 50791053 (+)
LOC110526112 LOC106587027 coding upstream 150628 50747281 ~ 50761069 (+)
LOC118964907 NA coding upstream 168577 50719208 ~ 50743120 (+)
LOC110526132 LOC106587036 coding downstream 69467 50991573 ~ 51017128 (+)
znf608 znf608 coding downstream 191880 51113986 ~ 51128144 (+)
LOC110526137 cep120 coding downstream 237328 51159434 ~ 51225264 (+)
LOC118964909 NA coding downstream 790684 51712790 ~ 51718231 (+)
homer1b homer1 coding downstream 961177 51883283 ~ 52006875 (+)
G517166 NA non-coding upstream 7742 50903698 ~ 50903955 (+)
G517159 NA non-coding upstream 23985 50887275 ~ 50887712 (+)
G517115 spinz non-coding upstream 104340 50804663 ~ 50807357 (+)
G517108 NA non-coding upstream 129275 50781949 ~ 50782422 (+)
G517181 NA non-coding downstream 31325 50953431 ~ 50953865 (+)
G517186 NA non-coding downstream 36834 50958940 ~ 50959139 (+)
G517073 LOC106587035 non-coding downstream 58120 50980226 ~ 50984195 (+)
G517961 NA non-coding downstream 159607 51081713 ~ 51082079 (+)
G517978 NA non-coding downstream 171837 51093943 ~ 51094182 (+)
barhl1a barhl1 other upstream 1159948 49748788 ~ 49753260 (+)
LOC118964898 LOC106585477 other upstream 1524485 49347319 ~ 49387212 (+)
G516011 NA other upstream 1604557 49305125 ~ 49307140 (+)
LOC110526066 LOC106584148 other upstream 1665244 49233579 ~ 49260632 (+)
LOC110493840 LOC106605670 other downstream 1356387 52277694 ~ 52279409 (+)
G519603 NA other downstream 1729834 52651940 ~ 52655297 (+)
G521552 prmt3 other downstream 3003836 53925942 ~ 53955130 (+)
G521914 NA other downstream 3347819 54269925 ~ 54270259 (+)
LOC110526161 LOC106587065 other downstream 3957593 54793125 ~ 54954478 (+)

Expression


Co-expression Network