LOC110526131 (LOC106587035)


Basic Information

Item Value
gene id LOC110526131
gene name LOC106587035
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 50980215 ~ 50984276 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021606765.2
TGCGTGTAATTCGTCTTCTTCGCCACAAGGTGGCTGGTGTGTAATAAATGGTGGCACTAGAACTCCCTTAAAACCCCGTATGTTATTGTTGTAGGCCAGCTAGCTACAGCGCTTCGTCGCCGGTAAAATTCTGCCGCACCGAGGGATTTTAATCCACTCTGATTCCCCTCAGTTAATACTCTGTTCGCCTGTTTACGAGACTTTGGTTTTATATATTTTACCATGATTAGAAAGTAGATAGTTAGGTCTTTAGTTCTACATTTTAGAGTCATCACTTTGTCGGGACAGGAGCAGCTAACAAGTCAGCcagctaactagttagctagtCAATTTAGCTAATACATTTTTTTCCCGATCAAGACGTCGATTGATACCACTGCTGTCATGGAAGACAAATCTTTTACGAAGGAATTAGATCAATGGATCGAACAACTAAACGAGTGTAAACAACTTACGGAGAATCAAGTCAGGAGTCTCTGTGAGAAGGCCAAGGAAATCCTTACCAAAGAATCAAATGTGCAGAAAGTGCGATGTCCGGTCACAGTTTGTGGGGATGTTCATGGGCAGTTCCATGACCTCATGGAACTCTTCAAGATTGGGGGGAAATCTCCTGACACCAACTACCTGTTCATGGGGGATTACGTGGATAGAGGCTACTACTCAGTGGAAACTGTCACACTTCTCGTCACATTAAAGGTCCGTTACCAAGAACGAATCACAATTCTGCGAGGAAACCACGAAAGCAGGCAAATCACACAGGTGTATGGCTTCTATGACGAGTGCTTGAGGAAATACGGCAATGCCAACGTGTGGAAATCCTTCACAGACCTGTTTGACTATCTCCCACTAACTGCACTTGTAGATGAACAGATCTTCTGCCTACATGGAGGTCTCTCTCCTTCTATAGACACTCTTGATCACATACGGGCTCTGGACCGCTTGCAAGAGGTCCCACACGAGGGTCCAATGTGTGACCTTCTGTGGTCAGACCCAGATGACCGTGGTGGCTGGGGTATCTCCCCTAGAGGTGCTGGCTACACCTTTGGTCAAGACATCTCTGAAACCTTCAACCATGCCAACGGACTCACCCTTGTGTCCCGTGCCCACCAATTGGTTATGGAGGGATACAACTGGGGCCATGACAAAAATGTTGTCACCATTTTCAGTGCACCAAATTACTGCTATCGCTGTGGCAACCAGGCAGCCATCATGGAGCTGGATGATACACTCAAATATTCTTTCCTACAGTTCGACCCGGCTCCTCGACGCGGAGAGCCTCATGTGACTAGACGCACCCCTGACTACTTCCTGTAACTGTTTGAAGCCATCCTTGTTCAAGTACTGCACATCTAGATTTGAATATACTGTACAAGAGGGGTTTAATAAATGCATTCTACAGAAGATAATGGTATAGGAAACCTACAAAATAATAGCAAGAACCCCCTCTGCAGTTTAGAAAATGCTGTCATAATGCTGTGCTGATAAACATTTGCAATAcatgtttaactttttttttttttaatacatgttTTAAAGTGATTGAAATATGAAAGTACCAACATGGACCAAATGTGCCATAAAATCTTAAGACATGTAAAACTTGCCTTTTTTTTTCACTTCAATAGAATACTATTTGGCCAATGTTGCTACAGATTGTACGCAAGACGTGATAACCAAGTATTTTGTGGCCATTACAAGAAAGCCCCATACAAACCAGCCCCTAGATTCAACTAACCTGTTCTTGCTGACACGTTCTTCATTTCGGCATACATTCTTTTAGCACTGTTAGTTTCCagttggtttaaaaaaaaagctaACAAAGATTAAATCCATGTTTTGTACCACTCTGTGGTTCCTCACAATCTTAACTGCTGCATATCTAGCATTTCCAAGCACCTTTGCAGGAACTAGTTGTTTCTAAAATGTGACCAAAACAAAGCTCTACACACATGCAAGAGACATCTCACTTGACACAACATGAATGTAATATCTTTCTGAATTCTCTAGTTTTTATAGAAGCAACTGGAAATTGACATTTTAAGGTCCTTTTTTTTCACTTAATTGAGAACGAAGAAAGTATCTCCAAGTTAGTTAAATCTATGGGCTTGTTTGTATGGGGTTTTCCTGTAATGGACACAATCTTTGGTTGTAAGACCAGCTAATGTTATCTGTAGCTACTCAAACTGACTATGGtatgaaatgttttttttcttgctAGATTGTAAATTTAGATTCCTAAAAGTCATTTAGCTTCTTAGACCAAGTGGCATTCATAAAGATGACTTGCTCTGCTGAACATCTCAGCAACCTTATAATTTGAATAAAGATAATGAACATTTAACGGTC

Function

NR:

description
PREDICTED: serine/threonine-protein phosphatase 2A catalytic subunit beta isoform-like

GO:

id name namespace
GO:0016311 dephosphorylation biological_process
GO:0004721 phosphoprotein phosphatase activity molecular_function

KEGG:

id description
K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021606765.2 True 2346 mRNA 0.41 7 50980215 50984276
Loading

Neighbor

gene id symbol gene type direction distance location
zgc:101664 NA coding downstream 9642 50963627 ~ 50970573 (-)
LOC110526129 LOC106587034 coding downstream 29798 50933550 ~ 50950417 (-)
lrrc2 lrrc2 coding downstream 101924 50848720 ~ 50878291 (-)
spinb spinz coding downstream 170606 50804638 ~ 50809609 (-)
LOC118965127 NA coding downstream 177430 50802690 ~ 50802785 (-)
nudt12 nudt12 coding upstream 34139 51018415 ~ 51031331 (-)
LOC110526133 LOC106587038 coding upstream 47167 51031443 ~ 51075263 (-)
prdm6 prdm6 coding upstream 247968 51232244 ~ 51288065 (-)
LOC110526140 NA coding upstream 280810 51265086 ~ 51270641 (-)
snx2 snx2 coding upstream 347596 51331872 ~ 51359413 (-)
G517902 NA non-coding downstream 19841 50960098 ~ 50960374 (-)
G517898 NA non-coding downstream 22892 50956040 ~ 50957323 (-)
G517897 NA non-coding downstream 24938 50955031 ~ 50955277 (-)
G517860 NA non-coding downstream 26334 50953615 ~ 50953881 (-)
G517893 NA non-coding downstream 46996 50931240 ~ 50933219 (-)
G517980 NA non-coding upstream 111168 51095444 ~ 51095644 (-)
G517995 NA non-coding upstream 122925 51107201 ~ 51107624 (-)
G518024 NA non-coding upstream 150941 51135217 ~ 51135445 (-)
G518035 NA non-coding upstream 161762 51146038 ~ 51146325 (-)
G517877 NA other downstream 58117 50911814 ~ 50922098 (-)
G517777 LOC106587028 other downstream 328796 50636549 ~ 50740638 (-)
LOC110515945 LOC106585521 other downstream 1356472 49622196 ~ 49624916 (-)
G516320 LOC106585521 other downstream 1443930 49535215 ~ 49536285 (-)
LOC118936342 LOC106585521 other downstream 1599393 49379716 ~ 49385907 (-)
LOC110526143 LOC106587046 other upstream 583702 51563139 ~ 51643817 (-)
G520661 LOC106587056 other upstream 2157939 53142215 ~ 53162922 (-)
G521438 NA other upstream 2766840 53751116 ~ 53751623 (-)
G521441 NA other upstream 2769773 53754049 ~ 53754538 (-)
G521418 NA other upstream 2775957 53760233 ~ 53761885 (-)

Expression

LOC110526131(LOC106587035) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 125.
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LOC110526131(LOC106587035) Expression in each Bioproject

Bar chart with 21 bars.
LOC110526131(LOC106587035) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 1500.
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Co-expression Network