LOC110493840 (LOC106605670)


Basic Information

Item Value
gene id LOC110493840
gene name LOC106605670
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 52277694 ~ 52279409 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021568351.2
GCCACATCGGATACATGCTACAGTGAAAGAGGGCATCAAGGAGCACATTCTATCTTTCCCAAGAACCCAGAACCACTACTCACGGATGAAGGGGGATGTACACAGAGAATACCTCAGCCCTGATCTGAATTTGTTGTGAATGTACCGACTCTAGAAAGAGAATAATACCACATCATCTGCAAAATTCTGGGTTTATAGGGACATTTTCAAACAGCAGTCTCAATTTCGGCCAACCCAGGAGTGACACCTGTGGCAAATGTGACGCATTCTTCACTAAGATGTCAGCAGCAACAtctgaagaggagaagaggaagattgCAGTTGAAAGTGAGTTACACCATCGAAAAGCCGAAAAGGCCTACATACAGCTTCAAAGTGACACTGAGTGGGCTAAAGCCAATGCTGACTGCCATGTCATTTCTGTGGATCTACAGGGGGTGATGTACACCCCTAATCTGACCCACTCCAATGTCTACTACCAGCGGCAGCTGTCAAATTTTAACTTTTGCATCCAGGAACTTGGAAAAGAAGATCCTGCATACATGTGTGTTTGGCATGAGGGGATTGCACACCGAGGGTCCATTGAGGTGGCAAGCTGCCTAATGAAGTGGGTGAAGACAAAATTCACGCCACTCACCAAACCAGAGGTGCGCAAGTTGATCATATTCAGTGACAGATGCTGTGGGCAGAATAACAACTGGTGGATGCTCAATCTGATGTCGATGCTCGTCTCTATGGGTTACTTTACCCAAGTTGAGCAGAAGTTCATGGTCTCTGGTCATTCTTTTCAACCTTGTGATCGATCTTTTGCCACCATCGAGAAGAGGCGCAAGGTGTCAGTCCTTCATACACCTGATGATGTTTCAAAGATGATACTTGAAGCACAACCAGCAAAACCATTCAAGGTGATGAGGATGCAATGTGAAGACTTCAGGCACCTCCCAGATTCTGTCCTCAAGCGACCAGCTGGACTACAGATCACCTCAGTGAGGTGGTTAAAAGTCACAGTTGAGGATCCTTGGAATCTGTACGCCAAACAGAGCCACAGTCTATTTGAGGGATGGAAGTCGTGGCTGATCTCCAAACCAAAACAAGGAGCTACACCTCAACCTCCCTATTTTGCAAGCCACTACCCTAGAGCATATGAGAGTCCTCTGCCCatcaaaaaaaaaacaagtaccAAGATCTGATGACCATGCTCAACTACTTGCCAGCTGCTGCATGCTCTTTTTAAGAATCACTGCAGAGTGAATAATTTGTTGTTAAACCAAGCTACATAATTAAACGTTTTTTCTGTGAGTTTATGATCCCCTGAACCTGCATACTGTAGTATGTTGAATCTGTATACATTTCAGAAGACATGTCACCCCTATTGTAGGAAATTAAATGTATCGTAGGTGTTTTCTATGTGAATCAATTTGTGTATGATTTGAACCAGCACaatatatttaattaatttaattttaaGATGTTGTTCCTAGTGTAGAAAATGTTATGTACAATGTGTTCTGTTGATAATTATTTTGTGTGATCATTTGAACCTTTTttaatctgaatgaattaaaaacaaataagtcatca
>TU589106
TCGATCTTTTGCCACCATCGAGAAGAGGCGCAAGGTGTCAGTCCTTCATACACCTGATGATGTTTCAAAGATGATACTTGAAGCACAACCAGCAAAACCATTCAAGGTGATGAGGATGCAATGTGAAGACTTCAGGCACCTCCCAGATTCTGTCCTCAAGCGACCAGCTGGACTACAGATCACCTCAGTGAGGTGGTTAAAAGTCACAGTTGAGGATCCTTGGAATCTGTACGCCAAACAGAGCCACAGTCTATTTGAGGGATGGAAGTCGTGGCTGATCTCCAAACCAAAACAAGGAGCTACACCTCAACCTCCCTATTTTGCAAGCCACTACCCTAGAGCATATGAGAGTCCTCTGCCCatcaaaaaaa

Function

NR:

description
PREDICTED: uncharacterized protein LOC106561952 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021568351.2 False 1581 mRNA 0.42 2 52277694 52279409
TU589106 True 371 TUCP 0.47 2 52278493 52278998

Neighbor

gene id symbol gene type direction distance location
homer1b homer1 coding upstream 270819 51883283 ~ 52006875 (+)
LOC118964909 NA coding upstream 559463 51712790 ~ 51718231 (+)
LOC110526137 cep120 coding upstream 1052430 51159434 ~ 51225264 (+)
znf608 znf608 coding upstream 1149550 51113986 ~ 51128144 (+)
LOC110526132 LOC106587036 coding upstream 1260566 50991573 ~ 51017128 (+)
otpb LOC106587051 coding downstream 105733 52385142 ~ 52390468 (+)
mapk8ip1b LOC106587053 coding downstream 244947 52524356 ~ 52645645 (+)
LOC110502468 LOC106605670 coding downstream 275596 52555005 ~ 52558912 (+)
LOC118965081 NA coding downstream 786618 53066027 ~ 53067743 (+)
LOC110526152 LOC106587056 coding downstream 831731 53111140 ~ 53202399 (+)
G519388 NA non-coding upstream 60386 52216987 ~ 52217308 (+)
G519379 NA non-coding upstream 68704 52207796 ~ 52208990 (+)
G519376 NA non-coding upstream 71374 52206117 ~ 52206320 (+)
G519374 NA non-coding upstream 71690 52205779 ~ 52206004 (+)
G519306 NA non-coding upstream 126459 52151025 ~ 52151235 (+)
G519564 NA non-coding downstream 184640 52464049 ~ 52466190 (+)
G519602 NA non-coding downstream 368948 52648357 ~ 52649692 (+)
G519675 NA non-coding downstream 376795 52656204 ~ 52656459 (+)
G519685 LOC106587054 non-coding downstream 391016 52670425 ~ 52674545 (+)
G520259 NA non-coding downstream 626027 52905436 ~ 52905657 (+)
LOC110526128 NA other upstream 1355597 50911697 ~ 50922106 (+)
LOC118964907 NA other upstream 1542458 50719208 ~ 50743120 (+)
barhl1a barhl1 other upstream 2525945 49748788 ~ 49753260 (+)
LOC118964898 LOC106585477 other upstream 2890482 49347319 ~ 49387212 (+)
G516011 NA other upstream 2970554 49305125 ~ 49307140 (+)
G519603 NA other downstream 372531 52651940 ~ 52655297 (+)
G521552 prmt3 other downstream 1646533 53925942 ~ 53955130 (+)
G521914 NA other downstream 1990516 54269925 ~ 54270259 (+)
LOC110526161 LOC106587065 other downstream 2600290 54793125 ~ 54954478 (+)
G523529 NA other downstream 3204840 55484249 ~ 55484607 (+)

Expression


Co-expression Network