LOC110526153 (LOC106587057)


Basic Information

Item Value
gene id LOC110526153
gene name LOC106587057
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 53354778 ~ 53759596 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021606800.2
GACAGACCCGAGCAAGTGGATTGCTAGCGAAGCGATCGACGGCGGATATTTCTGAGGAAACTGTACAGTTCAACTTCACACAAATGGATATTTACGTGGCTTTGTTATCGGTAGTGCTCATTGCGAAACCAGTTATCGGCTTTGGAATAGATCCCGACTACCAGATAGATATCATCAATGAACTTGACTTCGCAAATGCAATTTATGGAATTACCCAAGTGGCAGGGCTTCACAACAATAGCAAAGCCTTCTTATTTCGAGATGTGGGGAGAGCAGTCCACGCACCCGCCCACATCACAGAGAAGGTGGTGGAGCTTTTCAGGAGTAAAAGTGAATTTACCTTCCTGGCCTCCATCCAGCAGAAGACCTCCACGTCAGGAGTCATCTTCTCCATCCATGAATCTGAACACAGTTACTTTGAGCTGGAGAGCAGTGGGCTGAGGGAGGAGATCCGCTACCACTACCGCTACAAAGGCAAGCCCCGCTCAGAGTCCTTCCCCTACCGACTAGCCGATGGCCAGTGGCACAAGATAGCCCTTTCCATCAGTGCTACACACCTATTGCTGCATGTCGACTGCAACAGGATTTATGAGCGAGTGATAGACCCACCTCAGATGGATCTGACCCTGGGCAGTGGAGTGTGGCTGGGTCAGCATAGCCACAAGCACGGCCTCTTcaagGGTACCATTCAGGACGTCAAATTCATTTTTGCTCCAAACGGCTACATCACACAATGTCCCAACCTCAATCGCAGCTGTCCGACATGCAGTGATTTCCTGAACCTGGTGCAAGGCATCATGGaccttcaggagctgctggccaAGATGACCCTAAAGCTGAACTACGCAGAGTCCAGGCTGACCCAGCTGGAGTCCTGCCGCTGTGAGAGGACGTGCAGTGCCAATGGTGTGGTCTACAGAGACAAGGAGCTATGGGTGGAGCCAGAGAACTGCAGGAACTGCGGCTGCATGAACGGAGTAGTGGAGTGTCGCAGGATATTCTGTCCCCCTGCCAACTGCTCAGAGGACTCTCTCTCCGTGCATGTGGAGGGCACCTGCTGCAAGAAATGCCGACCAAAATGCACCTACATGGCCCAGACTTTGTCAGAGGGCCAGCGTCTGCTAACGAAGAGGTGCACAGAATGCAAGAACGGGATGATGGTGAGAGTGACAGAGAACTGTCCAGAGCTCAACTGCACCCTCAAGGAACAGATCCTACCTGACAACAGGTGCTGTAACATCTGCAAAGgcTACGACTTCTGCGCAGAGGGACTCATTTGTGGGGAAAATTCGGAGTGTAAAAACCGGAATACCAGAGCTGAGTGTGAGTGCAAGAGCGGCTTTGCCTCCATCCATGGGGACTCCACATACTGTGAAGATATCGATGAGTGTGTCACCCAGATGCACTACTGCCGGGCTAACACGGTGTGTGTGAACCTACTCGGCAGCCATCGCTGTGACTGTCTACCTGGCTTCATCAGAGTGGATGACTATTCCTGCACAGAACATGATGAGTGTGCCAGTGGGCAGAGCTCCTGTGATGACAATGCCATCTGCACCAACACCATCAGAGGCCACCTGTGCTCCTGTAAGCCTGGCTATGTGGGGAACGGCTCCATCTGCACAGcatTCTGTGAGGAGGGGTGTAGGAGCGGAGGTACCTGTGTGTCGCCCAACACCTGCGTCTGCCCCTCAGGCTTCACGGGACTCCACTGTGAGACAGACATTGATGAGTGTGCGGAGGTCCTGATCCAGTGCCACATTCACTCCCGCTGTGTCAATCTGCCGGGCTGGTACCACTGTGAGTGCAGGAACGGTTTCCATGACAATGGCTCCTACCTGATCGACGGGAGTTCCTGCATCGACATTGACGAGTGTGCCACGCAGACACACACCTGCTGGaacgacagtgtgtgtgtgaaccttccAGGTAGTTTTGACTGTATGTGCACATCTGGACCAGCCTGCAGTGGAGACTGTCTTTACGAGGAGGGCCTCAAACACAACGGACAGAAGTGGAACCACAGCCTGGACCACTGCTCCCTCTGCTCCTGCAAGGATGGGCGCACCTTCTGCATGAGGAGAGAGTGTCATTGTGCGGACCCCGAGACAGACCTGTTCTGCTGTCCTGAGTGTGACTCCAGAAAGTCCAGCCAATGTCTGCACCAGAGTGGACACATACTGTACCGCAGCAGAGACTCCTGGATCTACAGTTGCCAGCAGTGCCGCTGCctgGAGGGAAAGGTGGACTGCTGGCCCCTGGCATGTCCAGTGTTGGCGTGCAAATACTCTGCCTTGGTGGAGGGCGAATGTTGCCCGCACTGCGTCACTGACCCCTGCCTGGCAGACAATATTGCCAACGACATCAGGCAGACCTGCCAGGACCCTGCTGGCATCACCCGCCTCAGTAGTGCCACGTGGCCCATGCCAGGGTCACCCTGCACCACCTGCAAGTGCAAGAATGGAAGTGTGTGTTGCTCGGTGGAGCTGGACTGCCTTCAGAACAACTAAGCACTCCTCTTTCGGATGCcgtactcctctcctccactccaatCGTTCCATTCCGCCGATCCTAGACTGGTCATACTGTTTGAAGACCCTACCTTTGGACCTTttaccacacatgcacacaaacacacacatacgtatgcacacacacacacacacacacacacacacacacacacacacacacacacacacacattctgcctGGGTTAGGGAAGTGGCTAGAGCTGTGCGTTCACACTGGATCTTAAAGTCACAATGTATTGCTGACAGACGGAGAGATGGAGTTTGTGTCTGCTTAACAACTACAGGACAAGACCAACCTACATATAACCGTTTCCCCCCTACTTGCACCCTTATACGTGTGTgtcctgtatgtttgtgtgtgtgagtgtgtgtataccaGAGATTCCAAAACTTTTTTGGCACACGACCCCAccatgtaaaaaatgtataatcAAGGGACAGTGTTTTTTAATTGGGGCTATGACAGTCTATTAGAAATTAGTCTGACTGTACTCTTGACAGTATTTCAATGTGAAGGAAGTATGGTTTGAAGTGACGGAAATGCATCAGAAATGTGTTGGGAAGTACAAAAGATCATCAGGCAATCATCTTCTGTGTAGAAAAGAGCATCATTGTTGATGATGCTCTTTTCCCCCTGGTCTATATTAGTGCCTGGTCTTGTCTAATGAGTCCTGTGTAACATAtagaaggagacagaagacacATGCGTGTTCCTGAGAATCGTTTGATGGGATCATAATATTTTGTAGCTTAAATGGATCACAATATAGTCACATttgtaggaagaaaacagaaacGGCTGTGTTTTTTACATCGAGGGGCTACCAAAGCAATATTTTCCCACAGAatttatctcaaatcaaatccaattttattggtcgcgtacacatattttgcagatgttatcacaggtgcagtgaaatgctttatgtttctagctccaacagtgaagtaaaacctaacaatacaaaataatacacacaaatcccacCAAAAATTGAAAGAAAGAAAGTAAGAAATATCAAggtcagagtctggaatataaatgtATATAGTGGTGTATTTAGACATTATAGACCGTATATGAATAGAACaggtagtagttatataggatgagccttgactaaaATCCAGTATATactttttttactttttaatcaAACCTTtctttcacta

Function

NR:

description
protein kinase C-binding protein NELL1-like

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K24342 NELL; protein kinase C-binding protein NELL

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021606800.2 True 3710 mRNA 0.49 20 53354778 53759596

Neighbor

gene id symbol gene type direction distance location
LOC110526152 LOC106587056 coding upstream 152379 53111140 ~ 53202399 (+)
LOC118965121 NA coding upstream 191575 53163095 ~ 53163203 (+)
LOC118965122 NA coding upstream 195763 53158911 ~ 53159015 (+)
LOC118965081 NA coding upstream 287035 53066027 ~ 53067743 (+)
mapk8ip1b LOC106587053 coding upstream 709133 52524356 ~ 52645645 (+)
LOC110526155 LOC106587070 coding downstream 260516 54020112 ~ 54035663 (+)
LOC110526157 LOC106587066 coding downstream 323149 54082745 ~ 54104736 (+)
brsk2b LOC106587064 coding downstream 692858 54452454 ~ 54639254 (+)
LOC110526161 LOC106587065 coding downstream 1033529 54793125 ~ 54954478 (+)
LOC118965082 NA coding downstream 1306604 55066200 ~ 55068243 (+)
G520760 NA non-coding upstream 67788 53286419 ~ 53286990 (+)
G520753 NA non-coding upstream 73548 53281018 ~ 53281230 (+)
G520560 NA non-coding upstream 200164 53145715 ~ 53154614 (+)
G520531 NA non-coding upstream 245411 53109139 ~ 53109367 (+)
G520509 LOC100136012 non-coding upstream 262614 53091715 ~ 53092164 (+)
G520808 NA non-coding downstream 9722 53769318 ~ 53769575 (+)
G520810 NA non-coding downstream 14490 53774086 ~ 53775524 (+)
G521608 NA non-coding downstream 248027 54007623 ~ 54009061 (+)
G521609 NA non-coding downstream 249619 54009215 ~ 54010345 (+)
G519603 NA other upstream 699481 52651940 ~ 52655297 (+)
LOC110493840 LOC106605670 other upstream 1075780 52277694 ~ 52279409 (+)
LOC110526128 NA other upstream 2432681 50911697 ~ 50922106 (+)
LOC118964907 NA other upstream 2619542 50719208 ~ 50743120 (+)
barhl1a barhl1 other upstream 3603029 49748788 ~ 49753260 (+)
G521552 prmt3 other downstream 166346 53925942 ~ 53955130 (+)
G521914 NA other downstream 510329 54269925 ~ 54270259 (+)
G523529 NA other downstream 1724653 55484249 ~ 55484607 (+)
LOC110526167 LOC106587078 other downstream 1804152 55563439 ~ 55568167 (+)

Expression


Co-expression Network