LOC110526155 (LOC106587070)


Basic Information

Item Value
gene id LOC110526155
gene name LOC106587070
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 54020112 ~ 54035663 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036980433.1
ACAGGCGCACCGATTTGTGTCAGGAATTGCGAAACTATTGGGGCTGTACATGCGAATAGTCATGAATCTGAGATTCCATTAAGTAGTGTAAAGTTTAGATCTAGGCCTAGCATGACAAAGCGCTATATTGTGGAACACAAAACCCATCGGGTGGTCctgagtttcatcagctgttttgCCGGAGGCGTCTTCctggctgcctgtctgttggACATCATCCCAGACTACCTGTCGGACATCAATGCTGAGCTGGACGCACGGAGGGTGGACACCAGCTTCCCCCTCCCAGAGTTCATCATGGCTGCAGGCTTCTTCACTGTGCTAATCGTGGAGAGGATTGCTCTGAACTGCAGACAAGATGCCATGCAAGGGTCAGACCAGGAGAGAGCACCTCTGATGCAGGCCAACGGGCACCGCCATGGGCACGGGCAGGGGAAAGCCTCGTCCACCAACCTGGAGGGTAGTGCCCATCATGTCCACATGGACCTCCAGGCCCACTCCTCCTTTCGCTCGTTCATGCTCTTTTTCTCGCTCTCCCTGCATTCTGTGTTCGAGGGCCTGGCCATCGGGCTGCAGACCACAGACTCAAAGGTATTAGAGATCTGCATCGCCATTGTGGTTCACAAAAGCATCATCGTGTTCAGCCTGTCGGTGAAGCTGGTGCAGAGCGCGGTCCCGCCCATGTGGGTTGCGGCCTACGTGGGCGTCTTCGCCATGATGTCTCCGCTGGGCATCGGAGTGGGCATCGGGGTTATCGAGGCTCAGCTGGCGGCAGGCGCTCTGATCCAGGCCATCCTGGAGGGGCTGGCGGCCGGGACCTTTATTTACATCACCTTCATGGAGATCCTGCCTCACGAGCTGAACTCCCCGGAGAACCAGCTGCTCAAGGTGCTCTTCATCCTGTTGGGCTTCAGCGTCATGGCGGGCCTCACCTTCCTGAGCTGAGAGGACGTCACCCACTGGAGCAACTGACCTTGCAGGAATATGGGTGTGGCTCATATGAATCACGGGACTTGATGTTCTGTACTAGGGTCGCCATAATGGGAGATGTCTCAGGGAGAAGGGAAACATAAAAACGGTCCCGTTTTACTGCAGGGTTGATGCAGGGGAGATTACAGTGCCCGTGTCTGGCTGTGCCACTTTTATTTGAGGGTCACAGCTGTCCTtactcagtatttttgtttttaagGGTGATTGACACTCATTGGTATTTTTTATCCTGCTTTTAGCATATATTTTAATTTCACAGCCAAGGATGGTAAGacagttgtttttttatttaagaaCTTTTAATGATTTCAAATAGATTATATTTAGTTAAGTAATACCTTTTAATTTGGTTGTTTTAGCACTGGAAAAATAATAAGCACACAGAATGTGGCAATATTAGTTGTTTATCCTTTGGCATACATACCAGTGgttatcttaaaaaaaaaaaaagtatattttcttTTAACAATCGCTGTTTGTAACATTTTTCACATAACTGAAGATCACTGAAAAAAGTGCTGTTCATACTGACATCATGATTGCCTGGTCCCTTTGGCAAATTACAGgtgtggcaaggagtggaatgttagctaaaaagaCTTGTATCCAGACTAACATGATATCTCTTAATAGTCAAATGAATCCGTCACATCAATATCTCATTATGTATACAGGTTAAAATGTCAATTGCATCATGTTTACACTTTTGGATGTGTGCCCACAGTTAAGTTGTGAGCCTCCACAGTTAAATTGAAGTATTAAATGTTTTATCGCCATTGTGGAACTAATTGTTTTCACCTTGGGAACTATACCATGCCTTACAAATaaagattgttttattgtcacacaGTGGATagatgcagtgaaatgtgttttacagggtcagccatagtagtacggtgcccctggagcaaatttgggttaagtgccttgcttaagggcacagTAACAGATTATTTTTTTATAAGACAAACCATTGTGACCAACATGTTAAAGAGAGATTGTTATTTTAACATGTGCTGAAGTTGAACTTCTTAACCTGTGTTTTCCTGACTCGGTTCCTCGTTGTGTTGATAGTTTCCCTACCCCAGCCATGAGTCATGTTTCTGTTGTGTAATCAAAGTTTCAAATTTATAACAACACTATCTCAAGTGGCGCTCAGCTTCCTCTTactcctccattctcctctctgaCACTGTTGCAGTAAAATAATGATTAAACAAGTTGGCTATGA
>XM_021606804.2
GGCGCACCGATTTGTGTCAGGAATTGCGAAACTATTGGGGCTGTACATGCGAATAGTCATGAATCTGAGATTCCATTAAGTAGTGTAAAGTTTAGATCTAGGCCTAGCATGACAAAGCGCTATATTGTGGAACACAGTAAGGAACCACATTCATAGTAGGCCTTGTACGACATCATGATTGATTCAATATCCCCGTTTGGTCATTAGAATCAGGTCAGGCGTTATGTGCCTAGGAAGAATTCGTTACATTCTGTGGACTCAGCAATGAGCTGCGCTGTCTGAGAAAATCGTACTGCATTCTTAAAATTAGCATAGTAGGCGTGGCCATCCGGAAGAGGACGCAAATATGACCTATCCTAACAGCAGGATATTATGCTGGCACACGATGGCGGAAAAGTCATTTTTAAAATGCGTTTTTGGTTATTTTTAAGATTCCCTCATTACCATACGTGTGACGTCATCAGTTGTGCTGCTGACTCCTAGCGCAGTCCTCCAACACGTTGCAGGACAATGTaaacatgtaacgttagctagtaggCGCCTAAATAGCTCCTGAAATTGTCTGTGTAACAGGGATGAGTTTTTGAATAGCATAGGTTTTTGTTTTTCCAGTAACGCAAACATGTTGGTATGGCGTATTCATTTTACTGCCCGTTGGTTTACATCGCTATTTTACTAGGCTTATCCCAAAATTGCTGGTTTTGATTCAGCCCGGTATAGTAACAAATCGAGATGGACTACTTGTTACAGGTGAAAATAGGCGCCCTCGTGGGTTTGTTTCTCCTGACCGTATTTTTCGGATTTATCCCTGCTCGGTTGAAGTGGTTCAGAGAAACCAGTGGGACAGAAACCCATCGGGTGGTCctgagtttcatcagctgttttgCCGGAGGCGTCTTCctggctgcctgtctgttggACATCATCCCAGACTACCTGTCGGACATCAATGCTGAGCTGGACGCACGGAGGGTGGACACCAGCTTCCCCCTCCCAGAGTTCATCATGGCTGCAGGCTTCTTCACTGTGCTAATCGTGGAGAGGATTGCTCTGAACTGCAGACAAGATGCCATGCAAGGGTCAGACCAGGAGAGAGCACCTCTGATGCAGGCCAACGGGCACCGCCATGGGCACGGGCAGGGGAAAGCCTCGTCCACCAACCTGGAGGGTAGTGCCCATCATGTCCACATGGACCTCCAGGCCCACTCCTCCTTTCGCTCGTTCATGCTCTTTTTCTCGCTCTCCCTGCATTCTGTGTTCGAGGGCCTGGCCATCGGGCTGCAGACCACAGACTCAAAGGTATTAGAGATCTGCATCGCCATTGTGGTTCACAAAAGCATCATCGTGTTCAGCCTGTCGGTGAAGCTGGTGCAGAGCGCGGTCCCGCCCATGTGGGTTGCGGCCTACGTGGGCGTCTTCGCCATGATGTCTCCGCTGGGCATCGGAGTGGGCATCGGGGTTATCGAGGCTCAGCTGGCGGCAGGCGCTCTGATCCAGGCCATCCTGGAGGGGCTGGCGGCCGGGACCTTTATTTACATCACCTTCATGGAGATCCTGCCTCACGAGCTGAACTCCCCGGAGAACCAGCTGCTCAAGGTGCTCTTCATCCTGTTGGGCTTCAGCGTCATGGCGGGCCTCACCTTCCTGAGCTGAGAGGACGTCACCCACTGGAGCAACTGACCTTGCAGGAATATGGGTGTGGCTCATATGAATCACGGGACTTGATGTTCTGTACTAGGGTCGCCATAATGGGAGATGTCTCAGGGAGAAGGGAAACATAAAAACGGTCCCGTTTTACTGCAGGGTTGATGCAGGGGAGATTACAGTGCCCGTGTCTGGCTGTGCCACTTTTATTTGAGGGTCACAGCTGTCCTtactcagtatttttgtttttaagGGTGATTGACACTCATTGGTATTTTTTATCCTGCTTTTAGCATATATTTTAATTTCACAGCCAAGGATGGTAAGacagttgtttttttatttaagaaCTTTTAATGATTTCAAATAGATTATATTTAGTTAAGTAATACCTTTTAATTTGGTTGTTTTAGCACTGGAAAAATAATAAGCACACAGAATGTGGCAATATTAGTTGTTTATCCTTTGGCATACATACCAGTGgttatcttaaaaaaaaaaaaagtatattttcttTTAACAATCGCTGTTTGTAACATTTTTCACATAACTGAAGATCACTGAAAAAAGTGCTGTTCATACTGACATCATGATTGCCTGGTCCCTTTGGCAAATTACAGgtgtggcaaggagtggaatgttagctaaaaagaCTTGTATCCAGACTAACATGATATCTCTTAATAGTCAAATGAATCCGTCACATCAATATCTCATTATGTATACAGGTTAAAATGTCAATTGCATCATGTTTACACTTTTGGATGTGTGCCCACAGTTAAGTTGTGAGCCTCCACAGTTAAATTGAAGTATTAAATGTTTTATCGCCATTGTGGAACTAATTGTTTTCACCTTGGGAACTATACCATGCCTTACAAATaaagattgttttattgtcacacaGTGGATagatgcagtgaaatgtgttttacagggtcagccatagtagtacggtgcccctggagcaaatttgggttaagtgccttgcttaagggcacagTAACAGATTATTTTTTTATAAGACAAACCATTGTGACCAACATGTTAAAGAGAGATTGTTATTTTAACATGTGCTGAAGTTGAACTTCTTAACCTGTGTTTTCCTGACTCGGTTCCTCGTTGTGTTGATAGTTTCCCTACCCCAGCCATGAGTCATGTTTCTGTTGTGTAATCAAAGTTTCAAATTTATAACAACACTATCTCAAGTGGCGCTCAGCTTCCTCTTactcctccattctcctctctgaCACTGTTGCAGTAAAATAATGATTAAACAAGTTGGCTATGA
>TU591532
AACATTTTTCACATAACTGAAGATCACTGAAAAAAGTGCTGTTCATACTGACATCATGATTGCCTGGTCCCTTTGGCAAATTACAGgtgtggcaaggagtggaatgttagctaaaaagaCTTGTATCCAGACTAACATGATATCTCTTAATAGTCAAATGAATCCGTCACATCAATATCTCATTATGTATACAGGTTAAAATGTCAATTGCATCATGTTTACACTTTTGGATGTGTGCCCACAGTTAAGTTGTGAGCCTCCACAGTTAAATTGAAGTATTAAATGTTTTATCGCCATTGTGGAACTAATTGTTTTCACCTTGGGAACTATACCATGCCTTACAAATaaagattgttttattgtcacacaGTGGATagatgcagtgaaatgtgttttacagggtcagccatagtagtacggtgcccctggagcaaatttgggttaagtgccttgcttaagggcacagTAACAGATTATTTTTTTATAAGACAAACCATTGTGACCAACATGTTAAAGAGAGATTGTTATTTTAACATGTGCTGAAGTTGAACTTCTTAACCTGTGTTTTCCTGACTCGGTTCCTCGTTGTGTTGATAGTTTCCCTACCCCAGCCATGAGTCATGTTTCTGTTGTGTAATCAAAGTTTCAAATTTATAACAACACTATCTCAAGTGGCGCTCAGCTTCCTCTTactcctcc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036980433.1 False 2224 mRNA 0.46 4 54020112 54035663
XM_021606804.2 False 2932 mRNA 0.45 4 54020115 54035663
TU591532 True 699 lncRNA 0.38 1 54034910 54035608

Neighbor

gene id symbol gene type direction distance location
LOC110526153 LOC106587057 coding upstream 260516 53354778 ~ 53759596 (+)
LOC110526152 LOC106587056 coding upstream 817713 53111140 ~ 53202399 (+)
LOC118965121 NA coding upstream 856909 53163095 ~ 53163203 (+)
LOC118965122 NA coding upstream 861097 53158911 ~ 53159015 (+)
LOC118965081 NA coding upstream 952369 53066027 ~ 53067743 (+)
LOC110526157 LOC106587066 coding downstream 47082 54082745 ~ 54104736 (+)
brsk2b LOC106587064 coding downstream 416791 54452454 ~ 54639254 (+)
LOC110526161 LOC106587065 coding downstream 757462 54793125 ~ 54954478 (+)
LOC118965082 NA coding downstream 1030537 55066200 ~ 55068243 (+)
LOC110526162 NA coding downstream 1091393 55127056 ~ 55135622 (+)
G521609 NA non-coding upstream 9767 54009215 ~ 54010345 (+)
G521608 NA non-coding upstream 11051 54007623 ~ 54009061 (+)
G520810 NA non-coding upstream 244588 53774086 ~ 53775524 (+)
G520808 NA non-coding upstream 250537 53769318 ~ 53769575 (+)
G521104 NA non-coding upstream 267377 53752493 ~ 53752735 (+)
G521764 NA non-coding downstream 6862 54042525 ~ 54042737 (+)
G521788 NA non-coding downstream 15608 54051271 ~ 54051519 (+)
G521903 NA non-coding downstream 221961 54257624 ~ 54257903 (+)
G521913 NA non-coding downstream 233963 54269626 ~ 54269868 (+)
G522133 NA non-coding downstream 287861 54323524 ~ 54328396 (+)
G521552 prmt3 other upstream 64982 53925942 ~ 53955130 (+)
G519603 NA other upstream 1364815 52651940 ~ 52655297 (+)
LOC110493840 LOC106605670 other upstream 1741114 52277694 ~ 52279409 (+)
LOC110526128 NA other upstream 3098015 50911697 ~ 50922106 (+)
LOC118964907 NA other upstream 3284876 50719208 ~ 50743120 (+)
G521914 NA other downstream 234262 54269925 ~ 54270259 (+)
G523529 NA other downstream 1448586 55484249 ~ 55484607 (+)
LOC110526167 LOC106587078 other downstream 1528085 55563439 ~ 55568167 (+)
LOC110526169 LOC106587076 other downstream 1878680 55904064 ~ 55916081 (+)

Expression


Co-expression Network