LOC110526925 (LOC106587060)


Basic Information

Item Value
gene id LOC110526925
gene name LOC106587060
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 54125497 ~ 54370901 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036981764.1
cctcctcctcctcgttcccACTTTCAGCCAACGTCCACAGAGCAACACCGACTTTTGAGAAGAAGTTTCCCCGCCAGTATTGAGGATTGTGGGCGGAGGTGAAACGGAATAAAACATTGTTCCTTAAAGGACCGGGTAAAACCTTCAAGCTGAATTCGTCTGGCCTACTGACTATGCCCCGGAGTCCCACGTCCAGTGAGGATGAGATGGCCCAGAGTTGTTCTGACTACTCCGTGGACTCCGCCTCTGACAGCTCCCGTGAGGAGACCATCTACGAGACCATAAGAGCCACCGCTGAGCCGACCCCAAGACGCATGGACGACATACACACTCACTCCCTGGTTGTCCGCGTCCTCATCCCCGACCTGCAGcagacaAAATGTATGCGGTTCAACCCTAACGCGACTGTGTGGGTTGCCAAGCAGAGGATCCTGTGCACGTTGAGCCAGAGTCTGAAGGATGTGCTGAACTATGGCCTCTTCCAGCCCGCCATGAACGGACGTGATGGGAAGTTCCTGGATGAGGAACGCCTCCTCCTGGAATACCCACAGCCAATCAGCAAAGGAGTTCCAGCTCTGGAGTTCCGCTACAAGAGCCGAGTCTACAGGCAGACCCATGTGGAAGAGAAGCAGATTGCCAAACTTCACACCAAGGCCAACTTGAGAAAGTTTATGGACCTCATCCAGCACCATCAGGTGGAGAAAGTATCTAGGCTGCTGGAGAGAGGGCTGGACCCCAACTACCAGGATACAGAGACCGGTGAGACCCCCCTGACATTTGCGGCCCACCTGGATAACGTGGTGGAGATTATAAAGGTTCTGAAGAATGGAGGGGCTCACCTGGACTTCAGGGCCAAAGATGGCATGACGGCCCTACACAAAGCTGCTAGGTCCAAAAACCAGGTTACTCTGATGaccCTGTTGGAGCTTGGTTTGTCTCCAGACTATAAGGACAGTCGGGGTCTGACGGCGCTCTATCACACAGCCATGGTGGGAGGAGATCCGTTCTGCTGTGAGTTGCTGCTACATGAACACGCCACCGTCTGCTGCCAGGACGAAAACGGCTGGCATGAAGtccaccaggcTTGTCGGAATGGCTATGTCCAGCACCTGGAGCATCTGCTGTTCTACGGGGCGGACATGAGCGCACAGAATGCCTCAGGGAACACAGCGCTGCACATTTGTGCTCTCTACAaccagGATAACTGTGCCAGGGTGCTGCTGGTCCGTGGAGCCAACAAAGAGGTGAAGAACTACAACAGCCAGAGTCCCTTCCAGGTGGCCATCATTGCGGGGAACTTTGAACTGGCCGAACTGGTCAAGAACCACAAAGAGACAGATATAGTGCCTTTCCACGAGGCCCCGGAATACTCCAAGCGGCGTCGGGTCCCTCCCTCTACCAGCAGCAGCGGCAGCTGCCTGGTGGCCCCCCGGGTCCTGCTGCGCTCCAACAGTGACAACAACCTCACAGTGAGCCAGGGGCCTCCCCAGGACTGGTCCCAGCCCCAGGGACCCCCCCAGCACCACGGATCCCAACAGGGAGGGGTCGgaccccccacctccacctctcaccGTAGCCTCTCTCCACAGCTGCTCCAGCAGATGCAGGGGAACCCAAATGGCACTGTGAGGACCATGAGCCAGAGGTCCCGCAGTACCAGCGTGGGGGTGGTCCCGCGGAGTCCGTCCCCGTCCCTCAACCGGCTGGGAGAGGAGGCCTGCAAGCCACACCCGCAGACACATGTACAGACACAGCAGACTCAGCACAGGCAGACCAGGTCAGTAGAAGGAGGAGAAGCAGCAGAGACACACAGCCATGTACGTAGGCACATACTCTTTCcccacacaccacccacacacacatgcatgcgtaTGCACATATGTGTGtggctCCCCAGTGGTaatgtggaggtggtggtgcaGCGGAGGAAGCTGTACAGTGCCGTACCAGGTAGGCACTTTGTGGTGGTCCATTCCTACCATCCACGGGCCGAGGGAGAGATCACCCTCTACAAGAACGACAGGGTCAAAGttctGAGTATTGGAGAGGGGGGGTTCTGGGAAGGCAGTGCCCGGGGCCAGGTGGGCTGGTTTCCTGCGGAGTGCGTGGAGGAGATTCCTGCCAAGCCCAGCGAGGAGAGGACGCACACAAGAGCTGACCGCTCGGACAGGAGGAAACTCTTCCGACACTACACTGTGGGGTCCTACGATAGCTTTGATGCCTCCAGCGACTGCGTGGTCGACGAGAAGACGGTGgtcttgaccaagaaggagaatgaaggCTTCGGCTTCGTGCTGCGAGGGGCCAAAGCGGACACGCCCATCGAGGAGTTTACTCCCacccctgccttcccagccctcCAATACCTGGAGTCGGTGGACGAGGGAGGAGTGGCCTGGCAGGCGGGGCTAAGGACCGGGGACTTCCTTATcgaggtGAACCAAGAGAATGTGGTGAAGGTGGGCCACAGGCAGGTGGTCAACATGATCCGTCATGCAGGGAACAGCCTCATCATCAAAGTGGTAACGGTCAGCAGGAATATGGACCCTGAGGATACCGCACGTAAAAAAGccccCCCACCGCCAAAGAGAGCCCCCACCACCGCCCTGTCTATGCGCTCCAAGTCTATGACCTCTGAACTGGAAGAACTAGATAAAGTGGACGAGGTGTCACCTTCCCAGAAGGCCGTGGACATGAAAGTGGCCACCATTAAGCCACGCCCCTCCAGCCGCTGTTTGGTCACGCCTACTGACATGAATTCCATGTACGACCGCCAGGGTGGAGTGGCAGTGGTACCACCCACTGTGCCAGGCAGTCCTAGAGGGGGGGCATTCCTGGGCATACTTGCCAAGGGTGGCACCATGAGGAGACAGAAGTCCAtaggtataacagaagagaaagaagagaaggcgctcctctcccctcccccactcaAGTTCACCCGCAGCCTCTCCATGCCCGACACATCCGAAGACATCCCCCCTCCCCCGGCCatctcccccccatctcccccctcctcctacaactctccctctgtctcccccatgccAAGGGGCTACGGCACCACCCGACCGGGCCTCACCCTCAACTCCGCTGGAAAATGTTCCAACGCCATTACCCTTGGCAACCGCACGGTAGATGTAAGGACGCTAAGGCGAGGTTATCACCGCCAGAGCTCAGAACAGTACGATAGTAGAAGCCGAGGACGGGCGCACGTGCCCGAGAACCCGTACTCGGAGGTGGGCAACAAGGCGCTGTACGTGCCCGCCAAGCCGGCGAGAAGGAAGGGCATGCTGGTCAAGCAGCCCAATGTGGAGGACAGCCCAGAGAAGACCTGCTGCACCCTGCCCTCAGGCGCCGTTTCCATGCCGACCACACCCACTGAGAGGACCTTCTCGTCCATTCCCATCCCCACCATCATTGTCAAGGAGCCTTCCACCAGTAGCAGTGGAAAGAGCAGCCAGGGCAGCAGTATGGAGATTGAGCCAACCACGCCCGAACACCCACCCTTAACGCCTAGGGCAGGGGGCAGGGGGCTAAGGCCTGAAGACCCCATTGTCAACAACCCCTTTGCGGCTGCCATCGCAGGGGCAGTGAGGGACCGGGAGAAGAGGCTGGAGGCACGGAGGAACTCACCTGGCTTCCTCTCCACCGATATGGGAGATGAGGACTTGGGAGACCCCACCCCGGCCCCGCGGCTACGCCAGTCCAAGTCCATTGACGAGGGGATGTTCAGCAACGACGAGCACCTGCGGAGGATAATGGCACCCCCGCCGGCCACCACCCTGCTGCGTCCCCAAGAAGGGGTTGACCGTGGCGGTAACGTGACAGACTTCAACACCCCTGAGCCCACCCAGGTGGTCAGGGAGCCTCTGACCGCACGTACCGGCCAGTACCCCAACCTGGACAGCCCCGTCAGTCTCCCGGACAGCCCCGTCAGTCTTCCGGCCACCACGCCCAAGACCTACAGCTCAAACGGAGGATGGGGCTACCTGCACCCCGTCACGGGTAATGCCCTGGAACCTAACTCGCCCCTCGCCCTAGCGCTGGCAGCCCGGGACAGAGCCATGAAAGAGCAGACACAAACGACCATGGCAACGCAAGCCCCACCCCCTTCTCAACCTCAACCACACCCCAAGAGCGACGTATCCCAGTCCCTCCCCCCCAACCCCCACAAACCTGGCCTCAATCAGCCCCTCTTCATCGATACCAAGCTCCGCTCCAGCATTGAGCCGGGCTTCGCCAACTCCACGACAACCCTGGGGCGAGGCATAGGGGGGGACCTGAAGAGTCATATGACGGAGCAGAAGTACGAGtctgacggagagagggaggagaggcagcagGCGGCGGAGGATGGGAAGGGCATACAGATCGACGTTGTGGACACGTCACAAACGCAGAAAGTGGCCGGTCTGCTAATGGTGCACTCCAAAAACAGCCCagaggaggaagacagggggCAGGAGAACACACCAGCCCGGGACAACAGCATCCCCAGCGAACTGAGAGACCCCAACCAGCCAAACCCCCCCACCAACAGCCACAGTACCAAGCCCCTGCCCCCCGTGCCACGGGGGAAGACCATCACGGCCGGGGGTTCGGTCGACGAGCCAGTCAAGCTGTCCTTCCGCATGCCCCCTCCCCCGCTGGCCtcggtggacattgaggaggtggaggagtttGTCTTCTCCGAGCCCCTGCCGCCACCGCTGGAGTTCGCCAACAGCATCGACATCCCTGAGGACCAGGCAACGACCATCGCTGAGTTGCTCAAGCAACGGAACCAAGAGAGACGCAACGGGATGGGAACCAGGGGGCCACATCCACCCCCCTACTACACTCACGCCCCGATCCCTGTCGGCCAGTTCAGACAAGGGAGCGGGGTGTCCAATTGCATGCCCCCACCCTTCTATCCCCCTCCGCCCCCCGACGGTGGCTTTGAGAAAGGTGTCACTGACTCAAGCATCGAGGAGGTAGACAGTCGCAGAAGTGGAGACCCCCATGTAGAGACTACCAGCACCATTTCCACAGTTTCGAGCATATCTGTACTGTCGTCAGAGGGCGGGTACAACAGCGCCCTGGAGAACACTTCTATGGTTTATACTGGCGGCCAGGCTTACCTCGACGATCGACCCCCTGTTCCCCCCAAGCCCAAAAACAAGCCCATCATCAACAAGAACACTGCACTTTACCACAACATCCTCATGGAGGAATCCCTGGACTCCTTTGAGTCGCCCCCTCctgtccctccccctccacccggGTCCATATCCCCCCCAGAACTCCCCAGGACTCCCCCCCATCGGTCGTCCAAGCTGTGGGGCGAGCCCCCGGAGCTAAGGAGCCCACCCATGCCCGACCCCAAGGCCACGGTTATCAACGAGCTGAGCTCAATCTTATCACAGATGCACCGGCCCAAACCGGGGGACTCCCTGGACTCACCCACCACAGGGGCCAGGGGCGGCTTTGGAACCAGctctCCAGCCACAGGAAGCCAGCGGAACTCCAGCGTGTCTTTCAGCCTGCCCCCCTCCTCCTGCACCCCTCCTTCCAGCCTGCCCCCTCACCTCTGCAGCCCCCCGGACAcctcgtccctctcctcgcccccctGCCCCTCTTCTTTAACCCACTCTTCCTCACCCAGCCTTAGCGACCTTTTCGGCCTGCCCACCCTGCCCATGGAGAATGTGAGAGGCTTCGGCAGCATGGGCGGTAGCCTTGGTGAAGGGTCCTCGTGCGGTGGCTCGCGCTCCCCCTCGCCGCTCACCCTAATGCAGGCCATAGCCACCTCGGGCAAGCCCTTTGCCTCCAAGCCCGTGGAGCTGTGGAGCAAGCTGGACGTGGCCGACTGGCTGGACAGCCTGAATCTGTCGGAGCATAAAGACGCCTTCCTGGACAACGAGATCGAAGGCGCCCACCTGCCTTCGCTGCAGAAAGAAGATCTGATTGACCTGGGGGTGACGCGGGTGGGCCACCGCATGAACATCGAGAGGGCCCTCAAAATGCTGCAGGACAGATAAAGCCAGGGGGTGTGGATTTATCTGGAacactctctctcctacctgtttTCCTTCTCAGTCTTGGAAAGTCTTGGACGATTTAGGAATCGGCCTCTGACTACTCCCTTCCTGCCTCGCCTCTGTGGCGTGTTTGTGTTTGATCACTCCTATTCTGCTTCCCGAGCATCAGGGGATGTCGGAATCCTGGAGGAACTGCTGGGAATAGCCTGGAGAAAGGCGGCGTTCCCGAATACAGAATGGAGAAAGAGTGGAAAAAATCCTGCATCTTTTTAGGGATGCTCACAATACAAAAGACCACACTTTGGAATACTCTTGAAACGTAGCCCTCAAACACTTTGAAATACTGATAAAAATCAGTACTGGAATACTCAATCCTTTTTCAAGCTCCCCCAGCGCGGGTGTTTGAAACCAGCTGAGCTGGTTGGCACTCCTTTTCTATCTTTGCTAGAGTTTCTTCAGATAATATTTCTTCACTAGAGTAAAACCGTGGGTTATGTTTATGGATGCATCTGATGTTGTAGACACATTTGAAAAACAGACATTTGAAAAACATTAGAAACGAGAACCTTTGCAGAAATGTTTAGCTGAATCCTAAACCATATCattcgccacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacatatgatgATGTGTTGGTCACTCTAATGCATGGCTGGAGGGGCTCCACTGTAGCAGGCGCCACTGTCCCCTTCACATCCCTGTTCACTGTGGAAGGTGTGTGTATTTGCCTTTTGTCAGAGACATGTTTGtgatgtacgtgtgtgtgtgcacacactgTGGGAGGTTTGTTAAATGTGTTTTAGAAAGACATGAGTGAGAGTGCAAGGCCTAGATTCTGTCAGCCTATTCAAGGTGTATATtgcatctcacattccagtgttcgaaCTTGTAAACAGGGCTCCATGGGATTTATCTTAATGCAACTCCGtacagccaatggcaatgtccgttttaggtataatgctgggagccacttgtggatttgacagctctaacacagttccacctccgacaccgcAAAAACAACAGCTACGCGGGTGTTGGAAGGCATGAATCTGATAGAATCTATCCCTAAGTGTTAGCATCAGGTGTGTTGTCATCGTCTTCCACACACttgacagcgaccccgacaggaGTGGGATGCAACCTCCCTACACCCTACCGCCCAACCGACCAATCTCCCTTCAGGCCTATAACAGAAATAATCCACCTATCACAACAACCTTGGGAAACTCCATTTTCTGCCACAATATCGCCATCTCTCCTCTTTGTTCATCCATCTTTAATCATTTCTAGTTATTGAGTGATTCCTTTCGCAAATCAAACATTTCTTTTTTATTAGTACCAGTGTGTGCTGTTGTGGTATAGGTGAGGGCTGTATTTTCTTTGGTTGACAATGATTCTCGGCGAGAATTTGAAGACGCCCACTTTGAAAGGATGAGAGCAAAACGGACGTTATTTTGTGGTCTCTGTTAACGTAGGACACTGTGGTTGACTGTGTGctcacctacagtatactgtatagtgCAGGGGCCAAGAATAATAGGAATAATATGAATTCACTCAAAACACAAAAATGTGGGTTCCTGAGTggcgctgcggtctaaggcactccatctgaatccaggctgcatcacatccggccgtgattgggagtcccatagggcggcgcacaattggcccagcctcgtccgggttaggctggggtaggccgtcattgtaaataagaatttgttcttaaatgacttgcctagttaaataaggttacattaaaaaatatatatatatataataataatacatatactACCCAGACATTCACACAATCACCGaagaggatttaaaaaaatatttataggAACGTTTACAAAGTTTGTGTATAATCCGTGTTTGCATCGCCAATGAATCACAAAACGTCATTATTGACAAGAAGAGGTGTTAATCCTATCTGGTGTTTCCAGAGGGAAGAAAATAGGTGTGACACAGCAGCACTGACCGAGCAGGCTTTAGATGGTGCATTTGGTCCCTGTTAATttgagaatgagagggagagtcCTCAGTAACACTTTACTTAAGCATGCAGGTATAACCATTCTGTAAGGCTTGCTTATAAAACGTTATAACGTATTATTACTACAGgcttcaagtaaagtgttactgaGTCATTTTCTCAACACCAGTGAAAAGCTCGCACACCAATGAGCAGGTAGAACAAGCTTATCTTCTAATCAGAAATCCCATCTGACAGCCAATCAATTGTCTCCATCCCTTTTCATGAAACACCATTACTTCAATGTTAATATGAGAACTGCTGATAGGTGAGTACCCAGGAAGTGTTTGGTGGCATTGTTTTTTACGTAAATTGAATATATTTATTGCTTTGAATGTGTATAAAGGAATGATTTAAAGAAAAGAGTACCTCTATAGAATAATGATATGTATAATATTTCTAAAAGGTTTAGAGAGAGAATTTCTATGAAAGAATAGGACCATTGTATCCACCCTCAGAACTTATTTCCTTGTAACTTTATCCCTGTTTTGTGTTTGGCTAGTGCCTCGAATAGCTcattattctctacatagtgcccCATTTCTGGCCTTTCTGCCTCTGAACTAGATTATAACTACCCCATAATGCACTGCAAAGAGAAGTGTGGAAGCcatgtattctactgtacccAGATTACCTATATATTATAACATATCACTAAAACGTGAACAGTATGTGTGATCATTTGAGACACTATCCATGATTCTATCAGTTCACAGGGATGTTCTATGAACATAACCATGATTGTTTGGATTGTCTGCAATTTAGGGTCTCCTGTTGGACAAAACAAAAAGCTCCCTTGGTGATTAttcctttctctcgctccctgtccctGTGTGCAACTGTATGATGATGAAGGGAAGACAAagggatgattttttttttattatttaaaaaggGAATATCAGGCCAACAGAAGTAGAGGACCTACAGGAGTTTTAACGCTGCTATAATCCATTCATTATTTTAAAAGAAACAACAAAAGAGTGACAGAAAAAAAGCACAGTCTTTTTTATGATTATATAGAATTATATGGAATTTTCTAAAAGACATTTGGAGAAAAAATTTCAACTCTGAAGTGTGGTTTGCcaaaaagttgtttttttttaaatatattactatattatattatatattatatataaatattaatTAATATAAATTAATATTATCAGATTTATGAGGAAACTAAGAAGCAATATTTTTACTGAATGGATCTCCTTGGTTGTGGTTTTTCCCAGTCTTAAGATGAACTATCATGATATATCATCACCTGTTGATGTTATGAACACTGATAGCTGGAGTGGACAGAAGACATTTGtccaataaaaatgtattttatatactATCCTCTGGCCATCACCTGCCTATCTTGAATATTGTAATTTTTGACAATTCCAATCACTTAGtctgtgtataatgtgtgtataaaTGACTGAAACGCTTTAAATGTATACATAAGCTCACAGTCCACTGGATCGAAAACTGTCCCGATAACACTTTTATGCTCAACTTATGTAGACATGTACAAAAAAAGACTAGTTGTGACTGTTGACTTCATGGGAAAAAAACAACATATCACTAAGCTAATTTATTTGCAGAATTATAGAACTGAGTAGTCGTATTAAGATGCTAGACAAACCATCACTGTGTGACTATAAGGCTATGCTACATAAGGACTGGCATGGCTCACTATCATCACTACCACAACTACCACAACACAGTCCTTCACTTACCCATCGGCAGATATTTTGATACTTTTGTTATTTTCTCTTATggttgaatttttttattttattttttattctacaTAATTACAAAGACGTTTCCTGCTCTTTTGTGTATATTTGTGTTCATGTTCCATATGTTGTAATTCTGCATACTTAGTCGACTATCTAATTATCAAAATGAAAAAGAAAGAGAAGTTCCTTGTAACTGCACTCTTCCTTCCCCCCCAAATCCTCAATACTTCTTGTATGGCAACCAAACAAAAGTTACTGTAAGAAATAAATATAACATTGCACTA

Function

NR:

description
LOW QUALITY PROTEIN: SH3 and multiple ankyrin repeat domains protein 2-like

GO: NA

KEGG:

id description
K15009 SHANK; SH3 and multiple ankyrin repeat domains protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036981764.1 True 10166 mRNA 0.51 22 54125497 54370901

Neighbor

gene id symbol gene type direction distance location
prmt3 prmt3 coding downstream 118214 53899067 ~ 54007283 (-)
LOC110526924 LOC106587063 coding downstream 236875 53828781 ~ 53888622 (-)
lrp4 LOC106587054 coding downstream 1233404 52673661 ~ 52892093 (-)
LOC110526151 LOC106609580 coding downstream 1379909 52744519 ~ 52745588 (-)
LOC118965080 NA coding downstream 1742167 52363668 ~ 52383330 (-)
si:ch211-210p4.6 LOC106587062 coding upstream 14854 54385755 ~ 54402116 (-)
LOC110526926 rassf7 coding upstream 39309 54410210 ~ 54424635 (-)
LOC110526159 LOC106587061 coding upstream 268428 54639329 ~ 54669756 (-)
si:ch211-288d18.1 LOC106587068 coding upstream 302613 54673514 ~ 54712464 (-)
LOC118964910 NA coding upstream 707411 55078312 ~ 55111415 (-)
G521794 NA non-coding downstream 69527 54055597 ~ 54055970 (-)
G521792 NA non-coding downstream 70791 54054240 ~ 54054706 (-)
G521779 NA non-coding downstream 86123 54038847 ~ 54039374 (-)
G521778 NA non-coding downstream 87499 54037567 ~ 54037998 (-)
G521772 LOC106561904 non-coding downstream 95230 54029971 ~ 54030267 (-)
G522258 NA non-coding upstream 55068 54425969 ~ 54426176 (-)
G522281 NA non-coding upstream 70971 54441872 ~ 54442080 (-)
G522676 NA non-coding upstream 81578 54452479 ~ 54452928 (-)
G522748 NA non-coding upstream 196081 54566982 ~ 54628699 (-)
G522746 LOC106587064 non-coding upstream 261107 54632008 ~ 54656140 (-)
G521468 NA other downstream 313459 53811713 ~ 53812038 (-)
G521418 NA other downstream 363612 53760233 ~ 53761885 (-)
G521441 NA other downstream 370959 53754049 ~ 53754538 (-)
G521438 NA other downstream 373874 53751116 ~ 53751623 (-)
G520661 LOC106587056 other downstream 962575 53142215 ~ 53162922 (-)
G524834 NA other upstream 1597439 55968340 ~ 55969672 (-)
G525008 LOC106561927 other upstream 1796530 56167431 ~ 56302651 (-)
LOC110526187 LOC106587097 other upstream 2536673 56893209 ~ 56947117 (-)
G526016 NA other upstream 2775997 57146898 ~ 57147224 (-)
ccnd1 LOC106587137 other upstream 3584507 57955388 ~ 57962808 (-)

Expression


Co-expression Network