LOC118965082


Basic Information

Item Value
gene id LOC118965082
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 55066200 ~ 55068243 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005052418.1
ATTCCTGATTTAgatagaattacatacagtaaGGTGAATTTGCCCCAGAAGATTACAGGTTCGATCAAACAAAACAACATGGTCTCTTTATTTTACTGCATTCTGCCTCAATACTTCTgccttttttaaaaacatttcccTCTATTGTCATCATCACTTTTTTCTTTTCATCTCTCCTCCACACCCTCAAGTCTATTTGTTTGCATCACCTCTGTTCTTGGTTGGTTTATCTGTTTTCATATCTCCTACTATAACAGTGTTGTATCCACAAAGTATTACCTTTCATtacacaaaagctgcggcccttgcaaaacaagggaaacaaccagagcggttgacatcaccgattgaacaCTACTAGCGCAcgccgctaactagctagccatttcacatcggctacaatGCTATTTCCCACGATATCTCTTCCTGGCTCTAACCCTTTATTTCCAACTCTCCCAATGTGAAATGTTCTCCCTCATCATCCTGtctgtctttcactctctctccctctcttctcctcctctttctgctACAATTATCTTAAACCTTTCATCTGTAAAATAACTCACCTCCTCCTAACCTTCCACTTCAATGGTTCTGAAGGGCAGGCTGTTCTCCACCAATGACTTTGGCCTAACCAACTAGAAGCTTACAATGGGCCACtgtaacacactcacacacgcaagCACTTGCATGCacgcaagtgcacacacacaaaccctcccttgtctgtttctcctctgtgtctctgtcggGTGCTTTGGATCCATAAATACTGATGAAAGGTAAATGTGGGGTGCATTTTTCTGTTACCGTGACGACAGACAGAAGACGAGTGAAGAGAGCAGGGGCCTCATTTTTAAAAAATTTCTTAGATTTATACTTGAACTTAGTCCTAAAAATCATTTCCAACGGTGTGCTTATGTTCGATTCATAAAAGATACTGAGCATAAAGAACCTTGCTTACGCAGGTTCTAATAAGCCCATTTTTAACTTACGCACCTGTGATCTATAAATCTCAAATAACTTAAAATTGAGTGCACCTGAATGTGCCTTACAATCAGAGAATTCCCCTTATAGAATACTAGCACAAATGAGGGTTTAGTCAGGAATAGccatggaccaaaagagaaaagtAAACTTTTTGGAAGACGAGATCACGGCAATGGTAGAGGAGATTGAAGACAGGCAACACGTATATATTCTGTTGACTAAATAGTGAGTTGACAAACAAAACCAAACAGGTAGCTTTGCGAGTGTGTCgccgctgcagtgaacgaggtggggCAGCAAGACAGAACTGTGGCTGATGTGAAAGACCTGGCACTCCAGAGTTCTCCCAAATGGACCAGCGCATCGGGGAAATCATTGGGGAAAGCGCATACACTGGCACATGCGCCGACCGCGACAGTGAATGTTTAAAAAAAGCAGTAACATTGGAAACGGTAAAGTCGGTGCGCGAAACCCCAACCACTGCATCACTAGATCACGAAACAGGGGAAACTGCGTTGCAGCCCATGCGCCCTCCACCCAGGGATAAAGTGGGTGAGGCTCCCAAAGCAGCAGGTGCCAGGAATGAGGGCGAAGGTTTGGCCACAGGTGTCGAGGGCTGTCCATGTCTGCGTCCGTGCGCCAGGATGAAGTCCGTGAGGCCCCAGTTCCCAAGCGTCGCAGACCCGCAGGTGCCAGGGGTGAGGGGGAATGTTTGGCCACAGGTGTCGAGGGTTCATCGACGTCTGTGTCCACGTCTACAGTTCGCGTGTTGACCGCTGCAGTCCTGCAAACCCAGAATGAGCTGAACACATTGGTTGGGTAGATTGTGACTGAACTCGGAAGAATACGCAGGGTTTACATTCATTTACATAATGCAATTGTTGAACGTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005052418.1 True 1883 mRNA 0.46 3 55066200 55068243

Neighbor

gene id symbol gene type direction distance location
LOC110526161 LOC106587065 coding upstream 111722 54793125 ~ 54954478 (+)
brsk2b LOC106587064 coding upstream 426946 54452454 ~ 54639254 (+)
LOC110526157 LOC106587066 coding upstream 961464 54082745 ~ 54104736 (+)
LOC110526155 LOC106587070 coding upstream 1030537 54020112 ~ 54035663 (+)
LOC110526153 LOC106587057 coding upstream 1306604 53354778 ~ 53759596 (+)
LOC110526162 NA coding downstream 58813 55127056 ~ 55135622 (+)
LOC110526930 LOC106561912 coding downstream 283486 55351729 ~ 55364742 (+)
LOC110526163 LOC106587071 coding downstream 306853 55375096 ~ 55448136 (+)
LOC110526167 LOC106587078 coding downstream 495196 55563439 ~ 55568167 (+)
LOC110526169 LOC106587076 coding downstream 835821 55904064 ~ 55916081 (+)
G523091 NA non-coding upstream 17266 55048619 ~ 55048934 (+)
G523090 NA non-coding upstream 18639 55047341 ~ 55047561 (+)
G523060 NA non-coding upstream 38284 55027659 ~ 55027916 (+)
G523053 NA non-coding upstream 44559 55021397 ~ 55021641 (+)
G522510 NA non-coding upstream 276464 54789509 ~ 54789736 (+)
G523122 NA non-coding downstream 2416 55070659 ~ 55071002 (+)
G523235 NA non-coding downstream 183706 55251949 ~ 55257369 (+)
G523403 NA non-coding downstream 235998 55304241 ~ 55333015 (+)
G523464 NA non-coding downstream 274994 55343237 ~ 55343462 (+)
G521914 NA other upstream 795941 54269925 ~ 54270259 (+)
G521552 prmt3 other upstream 1111070 53925942 ~ 53955130 (+)
G519603 NA other upstream 2410903 52651940 ~ 52655297 (+)
LOC110493840 LOC106605670 other upstream 2787202 52277694 ~ 52279409 (+)
G523529 NA other downstream 416006 55484249 ~ 55484607 (+)
LOC110526175 LOC106587084 other downstream 1042036 56020625 ~ 56120747 (+)
G525645 NA other downstream 2507841 57576084 ~ 57581070 (+)

Expression


Co-expression Network