LOC110526162


Basic Information

Item Value
gene id LOC110526162
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 55127056 ~ 55135622 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002473894.2
gagtcaaaataaagaaaaactcaaactttccactggtagtgtatatagatatatatttagCAAGTTAGAGTCATACTTTTGTCTGACATCCGAAAATATCACTGTTTTGGTTAAATGGGACACTTCGCGGGCACGTGACTACAGTTTGTATTGAATTGTGGGTCATATCAACCCCACAAGTGATCAAAGTTCTTCACTCACTCCCTCAAGCTAAATCGAGGGTCGAAGTGGTAACGTTAGTGAACTGGACCTCCAATTAAGATAGCAATCTAACTGCATCCGGTTTCGACGGGGACTCGCCCAAGGTAAAGTGGCTAGCGCGAGGGCTGAGatatggaggagtggaggaggaagcaagagagatgggagatggagatagagaagaTGATGGAGAGGCGAGTgcgagatagagagggaaatggaagcgaggaggaggagggcggaGGAAAGGGAGATGTGTGAATTTATGGCGCTCCAGCGGAGGAGAATAGCAGAGATCTACAAGACGGAGACATCCGTGCGGAGAGATGCAGAAGAATGGAAAGATGGCATTCGAGAGAAAAAAGATGAGTGGAAGGAGTCCttaagagagaagcagaggatgATGAGGGAAGAGCAGCAGGatgacagacagaaagaggcGAGACAGAGATACATGGAGAGGCAAAGGAGGAGAAGAAAAGGAGAAGTGAGGAGAAATTgagtggaagaagagagaggatgaaTGGAGAAAGTGGATAGAGGAGAacgagaaagaaaagaaagaggatAGGAAGTGAGAGGAGGAATATAATAGGATGCaaaaggaggaggggaagaagagcgagagaaatgtgacaggagcagagggaggagctGGTAGAGCCGAGGAGGGAGGTGGAAAGACAATGTCTGGAGAATATAAAGTGGAAGAAGGAGGATGAGATTGAGATGGAGGAGATACTGAGAGAGCTGGCCACAAATATAAAGCTAGTGAAGAAATAGCAAAAGATTGAGGAAAAAATAGAGCGGAAGAGTTCATCAAGAAGCTAGAAAAGTGCACAATGAAAGTggtagagatgagaagagaggtggagagaaagtctaaagaaagggggaggaggaaaagagaaagaggaagctggagagggagacagagagataggaagCGAAGACTTTGAGGGGGAGAGGAATAAAAAcattggagaagagagagagtgagctgtTTGAGCAAAGAAAAAGACAGAAGAGCAGAATAAGAGCtatataaaaaacatttgtcCTGGTTATTAGAATTGAAGAGGAGAACGAGCAGAGAGAATAGAAAGCTGGAAGAGCAGAAAAAAGAGAGAAgcggagaggagaaaagaggtgAGGCTAACAATGTCAAGAagagaccaaaaaaaaaaaagtatctgaATGAATGGGTGGCGGGAAAAGAGGACAAGAGAGAGCTGAATAACACCGCTGTGGGAATTGACGATAACCTCTGCCAATTGATAAAGATTGTACAATTTCTTCCCTTCGTCACTTCCAACAAGCACAGTGCAAAGACTTTTCCATCTTTGCAGCAGGGGGAAAAGCCCAGCTCTCACCACTCGTGCcgcaacaacaataaataagggCTGGCGGGATTGATTTAACAATGGGTGGATGATTCCTTTTGATGATACACAATCTCACTTTAcgcccactgtctctctcttgcccttTGGAGATATTGATGGTCACTACAGTAACATGgggcggcgggtagcctagtggttagagcgttgggccagttaccgaaaggttgcttgatcgaatcccTGAACTAACAagctaaaaatctgtcgttccgcccctgaacaaggcagttaacctactgttctccggtaggccttcattaTCCCTCTACCTTTGCAGCTGGGAGAAAGAGTTGAGCTAAGATCCTGAAGCCCCTAAAGAGCAGAAAGTAGCCAGTCGAGatAATTACATTTAGTGACAAGAATCTACAACTAAAAACAAAGCTGTCCTACGAAGAGAGGGGATGGTTTTCTATACTATCTTCATACTGATTTAATTGTTCCTTAATTCATGCATTTTGAATAAAGATGCTAGCATCGAA
>TU592972
GCGCACAGGCAGCTCAAGATCATTTGATAGTTCTGGTCTCTCGGTGTACGTTAGTCCTGCTTCAGAAGCGGCATTGCTTTACAGACAAGTAAAATACCTTCAAAACTATCTCCAGAGAAGCTTTGGTGCTGGCATTTAAAATGCCATAGTGTACCCTTACAGACAAACAAACGTGCCGTAGCCAAGGCTTTTTCAAGGCGGCACATTCCATGTCTGATctgtgttaatctgcaaaattgtaattatttgcctacctcctcatgccttttgcacacaatggatatggactctttttttcttttttttctactgtgttattgacttgttaattgtttactccatgtgtggactctgtgttgttgtctgttcacactgctatgctttatcttggccaggtcgcagttgtaaatgagaacttgttctcaactagcctacctggttaaataaaggtgaaataaaattacaattaaaaaaaagtgtatctctgtctctccttcagaTCCCTCTACCTTTGCAGCTGGGAGAAAGAGTTGAGCTAAGATCCTGAAGCCCCTAAAGAGCAGAAAGTAGCCAGTCGAGatAATTACATTTAGTGACAAGAATCTACAACTAAAAACAAAGCTGTCCTACGAAGAGAGGGGATGGTTTTCTATACTATCTTCATACTGATTTAATTGTTCCTTAATTCATGCATTTTGAATAAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002473894.2 False 2086 mRNA 0.45 5 55127056 55135622
TU592972 True 704 lncRNA 0.39 2 55134776 55135607

Neighbor

gene id symbol gene type direction distance location
LOC118965082 NA coding upstream 58813 55066200 ~ 55068243 (+)
LOC110526161 LOC106587065 coding upstream 172578 54793125 ~ 54954478 (+)
brsk2b LOC106587064 coding upstream 487802 54452454 ~ 54639254 (+)
LOC110526157 LOC106587066 coding upstream 1022320 54082745 ~ 54104736 (+)
LOC110526155 LOC106587070 coding upstream 1091393 54020112 ~ 54035663 (+)
LOC110526930 LOC106561912 coding downstream 216107 55351729 ~ 55364742 (+)
LOC110526163 LOC106587071 coding downstream 239474 55375096 ~ 55448136 (+)
LOC110526167 LOC106587078 coding downstream 427817 55563439 ~ 55568167 (+)
LOC110526169 LOC106587076 coding downstream 768442 55904064 ~ 55916081 (+)
LOC110526172 LOC106561172 coding downstream 829600 55965222 ~ 55968091 (+)
G523122 NA non-coding upstream 56054 55070659 ~ 55071002 (+)
G523091 NA non-coding upstream 78122 55048619 ~ 55048934 (+)
G523090 NA non-coding upstream 79495 55047341 ~ 55047561 (+)
G523060 NA non-coding upstream 99140 55027659 ~ 55027916 (+)
G523053 NA non-coding upstream 105415 55021397 ~ 55021641 (+)
G523235 NA non-coding downstream 116327 55251949 ~ 55257369 (+)
G523403 NA non-coding downstream 168619 55304241 ~ 55333015 (+)
G523464 NA non-coding downstream 207615 55343237 ~ 55343462 (+)
G523490 NA non-coding downstream 265710 55401332 ~ 55454861 (+)
G523508 NA non-coding downstream 296171 55431793 ~ 55432133 (+)
G521914 NA other upstream 856797 54269925 ~ 54270259 (+)
G521552 prmt3 other upstream 1171926 53925942 ~ 53955130 (+)
G519603 NA other upstream 2471759 52651940 ~ 52655297 (+)
LOC110493840 LOC106605670 other upstream 2848058 52277694 ~ 52279409 (+)
G523529 NA other downstream 348627 55484249 ~ 55484607 (+)
LOC110526175 LOC106587084 other downstream 974657 56020625 ~ 56120747 (+)
G525645 NA other downstream 2440462 57576084 ~ 57581070 (+)

Expression


Co-expression Network