LOC110526167 (LOC106587078)


Basic Information

Item Value
gene id LOC110526167
gene name LOC106587078
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 55563439 ~ 55568167 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021606837.2
AGGAGCTTTGGGGCAGCCTGCTATAAAACGCCTCTCCCCAGAGTAGAGGGGCCAGAGGAGTAAAAGCTAGTCATTCAGATTGGAACCTATCAGATCCTCACTTGTTCTTGACGGAGTATTTCAACAGATTGTTTCGTGTTGCGTtatactacagacgggaccatgATGATCCCAAGCGTCCTTGCGCCTAATGCGATGTACCCAGGCCTTTACCGCCCCTCCGCCTCCATGCCGCTCCAACGGTCTCTGCAGAACGCGTTTCCAACCCACTCCAGCTTTCTAGTGGAGGACCTGCTGCGGATAAGCAGGCCGGCGGAGTACCACTTCAGCCGGACGCTCCCCTCAGCAAGCGTCTCCCCGGCGACAACCACCACAACCATGTCCTTCAGTGCCATGCCACAGGAGCGCATCGTCTCTCCAACTGCCTCGACGCGTGAATCATGCTCTCCGAAAATGTCACAACCGAGTAGTAAAGACCCAACTTATCTTAAATTTGGAGTCAGCGCAATCCTGGCACCATCACCAAAGACCGCATCGCTGCCCCCCGCCATCCACCACAGTATGCACCCCAAggccttctctctcccctacttcGACGGATCCTTTCACCCCGCCTTCTTCAGGTCGACATATTTCCCAGCGTCTTCATCCGTCGTGCCCATCCCAGGGACCTTCTCTTGGCCACTGGCCAACAGAGGGAAGCCGAGGAGAGGGATGCTCAGACGGGCAGTGTTCTCTGACGTGCAGCGCAAAGCTCTGGAGAAGATGTTCCAGAAACAGAAATACATCAGCAAACCAGACAGGAAGAAGCTGGCCTCAAAGCTCGGTCTCAAAGACTCGCAGGTTAAAATCTGGTTCCAGAACCGCAGAATGAAGTGGAGGAACTCTAAAGAGAGGGAGCTCCTGTCTTCAGGAGGTTGTCGCGAGCAGACCCTGCCCACCAAAACGAACCCACACCCAGACCTCAGCGACGTCGGCAAGAAGTCCTCCGCGGAGGAGGACGAGATGGAAGAGAACCCATTCGGCGCTAGAGGCGCGCCTGGCCTTTGCCATTCCCCCGCAGCGGGGCACGAGCTGTCCAACAGCGGCGGATCGAACCTCTCGTCGCCATCTCTCTCCAGCAAGCACTCGGAATTCTCAGAATCAGATGAAGAAGAGATCACAGTTTCTTAATTGATTTATAAAAACTCAGATATGTTTATAAAATGgttatccacaggttaactgtaccTATGTGACCATGTTTGCAAGAGTCTGTATCCCTTAATTTAGACCCAACTACtaagaaatgtatttatttcatatTCCAAAATATTTTCAAACAATGAACTTCTGTCAAATCAATTTAGGCTACATCCATGATTTTTTTCTTTTAAAAATAATGGCAAGGTTTATTTTATAGAAAGGGCCGGCTCTAGCCTTCTGGGGGGCCCTAAGGGAGATTTTGTTGGGGGGCCCCCACCTAGAGGGCAATTTTATTTTAGTGGCTCCCCTCTTGACAGCACGGTTTTAAAGGTCTACACACTTTGCCATTGGGTGGAAAGAAAATGTGGCAtttttataacacatttcatgcaattctactcattttccCATGGAGTTGTAAGACATTTTTgcagctttacatttttttttttttgcagttctGCCATGGTGTGGATAGAAAATATTGACATTTTATAATAATGTCATtaaattctactcattttgccatgacaTGACATGAGTGATTAATGGGGCCCTGGGCTCGGTCGGAATTCGGGCCATGATTTTCTACAAGTTTAGATgactggctagactaacttaccaatctaaaaattgttTGCAGgaatggctaattgagtgactgtcagtgactgacaaaacaagagaagagctgctgatgcacaaccaaatttcaaacttgcaccttgtgtattctactattctaactctcaacagtaagttgagaaccTGACTGAGTTAAAAACAATTATATAATGGGCCCAAGTGGCCCTAAGCGACAGCTTATatcgcttatgcctggagccgtCCCTGCTTATAGGATATACTTAGAAATGATTTGCTGTTTTGCACAGCTCTTTCAATTGTACAGTATTTTGTACAACTATTTGTATGGATATTTTATGCCAAGAAAATGGAGTTACCTGGACTTACAGTTTTTATTGAAAAGTGTAGACATTTCGTGCATAATTTATACGGATTTGTTAATtcaatgtattgtgtgtgtgtgtgtgtatatatatatatatatatatatatatatatatatatatatatatatgtgtgtgttaatATTTCACTATGTTTGTTATTTCAAtgtattgtgtgtatatgtgttaatatttcactatgttttgtACAAATACCAAATAAAATGTAACAGCTACATGGTATAACTTCTGTTACAAAACGGAAATGAACAACAGTAGAAATCATTAAATAGATCGATAGGTTTATGCTAGCAGAGAGCCATAATTGATAGTCACATTGCATGAATTAATAAATAACCATGATTTTTATTGAATCACAAATAACTTAAGACTAGTACAGTGATCTTCAGAATCAGTTCTCCAAGCTCTGGAGAGAACATTGACGATAAACTCCACACGCCTGCTCTGACGCAAAAGAGACTGTACACAAAATACTCATTTTCAAGTAGTTACAAATGGGCTAGAAAAGTCATCAAAATGTTGCAAGGTAATCAAGTATTTACACTGTTATGttacatatgtttttgtgtttttttttttttttttttt
>TU593613
CCGGCGGAGTACCACTTCAGCCGGACGCTCCCCTCAGCAAGCGTCTCCCCGGCGACAACCACCACAACCATGTCCTTCAGTGCCATGCCACAGGAGCGCATCGTCTCTCCAACTGCCTCGACGCGTGAATCATGCTCTCCGAAAATGTCACAACCGAGTAGTAAAGACCCAACTTATCTTAAATTTGGAGTCAGCGCAATCCTGGCACCATCACCAAAGACCGCATCGCTGCCCCCCGCCATCCACCACAGTATGCACCCCAAggccttctctctcccctacttcGACGGATCCTTTCACCCCGCCTTCTTCAGGTCGACATATTTCCCAGCGTCTTCATCCGTCGTGCCCATCCCAGGGACCTTCTCTTGGCCACTGGCCAACAGAGGGAAGCCGAGGAGAGGGATGCTCAGACGGGCAGTGTTCTCTGACGTGCAGCGCAAAGCTCTGGAGAAGATGTTCCAGAAACAGAAATACATCAGCAAACCAGACAGGAAGAAGCTGGCCTCAAAGCTCGGTCTCAAAGACTCGCAGGTTAAAATCTGGTTCCAGAACCGCAGAATGAAGTGGAGGAACTCTAAAGAGAGGGAGCTCCTGTCTTCAGGAGGTTGTCGCGAGCAGACCCTGCCCACCAAAACGAACCCACACCCAGACCTCAGCGACGTCGGCAAGAAGTCCTCCGCGGAGGAGGACGAGATGGAAGAGAACCCATTCGGCGCTAGAGGCGCGCCTGGCCTTTGCCATTCCCCCGCAGCGGGGCACGAGCTGTCCAACAGCGGCGGATC
>TU593614
tgctgatgcacaaccaaatttcaaacttgcaccttgtgtattctactattctaactctcaacagtaagttgagaaccTGACTGAGTTAAAAACAATTATATAATGGGCCCAAGTGGCCCTAAGCGACAGCTTATatcgcttatgcctggagccgtCCCTGCTTATAGGATATACTTAGAAATGATTTGCTGTTTTGCACAGCTCTTTCAATTGTACAGTATTTTGTACAACTATTTGTATGGATATTTTATGCCAAGAAAATGGAGTTACCTGGACTTACAGTTTTTATTGAAAAGTGTAGACATTTCGTGCATAATTTATACGGATTTGTTAATtcaatgtattgtgtgtgt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021606837.2 False 2762 mRNA 0.43 4 55563439 55568167
TU593613 False 785 TUCP 0.58 4 55563748 55566499
TU593614 True 353 lncRNA 0.36 1 55567283 55567635

Neighbor

gene id symbol gene type direction distance location
LOC110526163 LOC106587071 coding upstream 115303 55375096 ~ 55448136 (+)
LOC110526930 LOC106561912 coding upstream 198697 55351729 ~ 55364742 (+)
LOC110526162 NA coding upstream 427817 55127056 ~ 55135622 (+)
LOC118965082 NA coding upstream 495196 55066200 ~ 55068243 (+)
LOC110526161 LOC106587065 coding upstream 608961 54793125 ~ 54954478 (+)
LOC110526169 LOC106587076 coding downstream 335897 55904064 ~ 55916081 (+)
LOC110526172 LOC106561172 coding downstream 397055 55965222 ~ 55968091 (+)
LOC110526171 LOC106587080 coding downstream 403273 55971440 ~ 55980904 (+)
LOC110526173 LOC106587080 coding downstream 414103 55982270 ~ 55990919 (+)
LOC110526175 LOC106587084 coding downstream 452458 56020625 ~ 56120747 (+)
G523721 NA non-coding upstream 637 55562482 ~ 55562802 (+)
G523719 NA non-coding upstream 3954 55559169 ~ 55559485 (+)
G523709 NA non-coding upstream 10329 55552869 ~ 55553110 (+)
G523700 NA non-coding upstream 16474 55546577 ~ 55546965 (+)
G523696 NA non-coding upstream 19772 55543400 ~ 55543667 (+)
G523746 NA non-coding downstream 21173 55589340 ~ 55636958 (+)
G523763 NA non-coding downstream 50217 55618384 ~ 55620951 (+)
G523785 NA non-coding downstream 94774 55662941 ~ 55663185 (+)
G523786 NA non-coding downstream 97643 55665810 ~ 55666017 (+)
G523792 NA non-coding downstream 112007 55680174 ~ 55680379 (+)
G523529 NA other upstream 78832 55484249 ~ 55484607 (+)
G521914 NA other upstream 1293180 54269925 ~ 54270259 (+)
G521552 prmt3 other upstream 1608309 53925942 ~ 53955130 (+)
G519603 NA other upstream 2908142 52651940 ~ 52655297 (+)
G525645 NA other downstream 2007917 57576084 ~ 57581070 (+)
G525861 LOC106587122 other downstream 2035941 57604108 ~ 57606367 (+)
fbxo3 fbxo3 other downstream 2053681 57621795 ~ 57635241 (+)
LOC110526167 LOC106587078 other upstream 784 55563439 ~ 55568167 (+)

Expression


Co-expression Network