LOC110526169 (LOC106587076)


Basic Information

Item Value
gene id LOC110526169
gene name LOC106587076
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 55904064 ~ 55916081 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021606840.2
GACATGTTGAAATAGACGTAACCTAATTTAATGGTTGCCAAAATTGAATTGGCTTTATGCCAAGTTTTTGGCAAGATATCTGTGCGGCGTTTAATGTAAACTCGTGGGATCAGGCGTTGTGTGAGTAGTTTCAAATTGTGATGGTTGGCTCTATCCGGTGGGGGGAGTTCTGGGCGTTCTGTACGCGTGAAACTAGGCGGGACAAATGAAATGGTCCTCAAATCAACGTATTTTACTCACTTGGGTAGGACTACAGGGCAAAAGTTATTTTGGCTCTCCTTTTACACCCTTAGTGTGAATTAGCTGATCGTCTGGTTCCGAAATTGCATGGGGACATTGACaacatttccatttttttttcaaGGTATTAGGATTGTTTTGTCAGCCAATAGCAAAGCACACGTTTATCACCAATGCCTTTAGCTGCTTGACTTTGCAAGGGGAAGCAAACAAGAATTTGAGAGGGGCACAAATGTAACCTGTGCTATAGGTTGGAAAATGTCGAGCACTTCACCGGAGTCCCAGTATCTGAGACATACAACTCAAACCACCACCTCTAATCACAAGGGGAATGTCTTTGCAGAGCCACAAGCACTGACAAAAACACCAAGGAAAGCATCTACCCAAGACACTGTGCTAACAGATATTCAATCCAACATGGGACCTCTTATGACCCCAACTAAAGGAAGGGAGACTGGGACTGGTGAGCCTTGGACCCCAACCTCCAATTTGAAAATGCTGATGAGCGCTGCCAGCCCTGAGAtcaggaacagagagaaagagctgtGTATGGACTCTGAGGGAGGGGATGCCATGGACCACGAGcttggagaggaaggggagaaacAGATCAGCAGAAAAGAGAAGAGTCTGGGTTTGCTCTGTCACAAGTTCCTGGCCCGCTACCCTGATTATCCCAACCCTGCCCTCAACAACGACATCAGTCTGGATGATGTTGCCACAGAGCTTAATGTGGAGCGCAGGCGCATCTATGACATCATGAATGTGCTGGAGAGCTTGCACATGGTCAGCCGGCTAGCCAAGAATCGCTACACATGGCACGGGCGCGCTAACCTACCACAGACCCTGGCCAAGTTGCGGCAGGTGGGCGAGGAGCATCGCTACGGGCAACAGATGCAGCAGATCCGCCAGCGCAGCCTGGAAAAGGAGTTGGACTCGGACGGTGAGGAGAAAGAGAacgaggaggtggagggaggagaacagGGCCAGAAGGAGATGTTCTTCGTGGAGCTTCCTGGGGTGGAGTTTAAAGCAGCCTCCGTGAACAGCAGGAAGGACAAGTCTCTGAGGGTGATGAGCCAGAAGTTTGTCATGCTGTTCCTGGTGTCCACACCTCGGGTGGTCAGTTTGGATGTGGCTGCCAGGATCCTCATTGGAGAGGACCAGGTGGCTGATCAGGACAAGAGCAAGTTCAAGACTAAGGTCCGCAGGCTGTATGATATAGCCAACGTGCTGCGGAGCCTGAAGCTGATAGAGAAGGTCCATGTgacagaggagaaagggaggaagccAGCCTTTGAATGGACCGGCCCTGAGGACTTCCCCAGTGTGAAGGAGACCACTGCCACTACAGCGACTGCCAAGAGGAAACTTGAGTCTCGTACCTCCGTAGACAACTGTGCCAAaaatctcttctcctctccgggGAGTAAACGCAGCTTCACCCGCCACCCCTCCCTCATCAAACTGGCCAAGAGCATCCAGGAAGACCGGCGAAAGATCAACTCAGCCCCCACCAGCCCTGTCAAGAATGATTCCTCGAGCAGTGAGTTCTTTCCCACCAAAATGGCCCAACTAGCGGCCATCTGTAAGTTCCAGCTTGACCAGCAATCAAACAAGGTTGTTGACAGGACACCGAAGTCTGCAGTTACTGTGACTGAGGCACTGCCAGCTCATCAACAGAAAGCTGCTAAAAAGCCAGGAGCTCCACAGCCCCCAGTATTAACACCCACAGAAGCCCGTGCCAGCACTGTCCACCTCACCCCACGGGCACAGTTCACCCCCCAACCTACTGGGGCAATGTCCTTCCACCCTGCCCAGTGTTCACCCCTCATCCCTATGCTGCTGCCCCAACACCAGGGAGGCGGTCCCTACGCCATCTACATGCACCCCTCGTCCTTCAAGCCACACCCCCTAACCAGGCCTCAGCCAACCAGCCTCGCTGTGCGCTCTATGACCTTCGAGGATAAGACGGGGCAGAGCCCGAGTGATGTCACAGTGCAAGGCCACTCGTCTGCTACGAACAAGCTGCCAACCAGCAGCCCCTCGGCATTAAAACGTGTGTGTTCAGAGAGAACTTCAGAGGAAAGCCCCTCCAAGGCCAAGAGGATTGACCCTAGCACCAGGgacacGTCTCCTAAGCTGTGTGAGATCCTCCAGGCTCGTCTAAAGGCGCGTCGCGGGGGTCTCGTCTCCAGCCGTCCCTCACCCCGAGCCCTCCACCTGGACCCAGAGTTCGTCAACACCCCTGGGAGCTCAGTGGCCGTCGCAGCCAATCAGACACTGGAGCAGAACCTGGAGACCTTcctggagaaggaggagaaggtcaCAACCTCAGACGGCGAGGCAGGGCTCACGCCGGTCAGAGCTGTTCCACTGAACCCTCAACACCTACACacagagACTCTGATCCCCACTGGCTACCTGATCCCCATCTCCCAGCAGTCACTCTTCAGCTACAAAGACCACAACACAGAGAGCAGCAAAGCCTTCACACCCACCTACAACATTTACCACACACCCACCGCAGgCTCTAGACCTCCCCCGATCCAGGAGTTCACCCCTACCAGCCTCCCCCTCCACAGGCCTCCCCCCTCCTCGCCCTTCTCTGCCCAGGGACACCGCTTCCCCAGCCCTGCCATCCTCAACTTTACCCTGCAGAACCTGGGCCTCATACCTGGGCCTGGCTCTGTGCCCACTTACAGCCCTGGCACTGGCCACACCCCGGAGCACCCCAGCTCCATACCCAGCCCCCTGCCTCCCCACCTGGGCCTGCATCAGAGGGGCGGCATGGTGTTTGTTAAGCCCATGTCCCCCGTGCCAGTCCAACACCAGATGACCGGCCCAGGCGGACAACCACTCACGCTAATCAGCCTACAGCAGatgaccACGCCCAAAGGGACGGCCCTCCCCCAGCACAGTTTCTTCCACACCCCGCTGGCTACCGTGGTAACCACCAGCCATGGACACACGGTGCCAGCGGGCACCAAAACCGTTTACATCCCTCAGCGGAAGCTGGACGTCACCGCTGAGGACACCTAAAGACTATGCTGCTACACaaactttctgtgtgtgtgtgtgtgcgcgtcagcCCTTcaacatgtgtgtgtctgtgcatgtctgCATGGCTTTCTATGGTCCGACTGTCGTATTTTTTAAGGCGTACTGTAGGTTGAGTGGTTTTGTGTTTTAGGGTATGTGATGTCGCTATATGAGTTCATCCAAAACTGGTCCATAGGTTATTCCAGCGTTTCCCACACTCAgtgcacgtttttttttttttttgtgctagTACTACACAACTGATTCCAATTATTAAAGCTTGacgattagttgattatttgaattagctgtgtagtgctagggcaaaaaccaaaacatgcagccCTTGGGGTCCTGAGGACTGAGTTTCAGAAGCCCTGGTTTATTCCATTTCTACAGGGGAAGACAAAGTATGTGAACATGGTGTGGAAACTCCATACAGAAACAGCTGCGAGTCACCATCATCACAGCTAGCTCCATATATAACTGATGGCGAGACCAGCCTTGGTAAATACTCTTAACCCTGGGGCTTGATACACGATATGCTGGATATTACTgtgtaatactataatactacaacatACTTTTGATACTGGTGTATATGTATGGAAATATGATTAGGGCTCACCAGTAGGTATTAAACTGGCGAGGGGTGCTTTCTGTGTCTGAATACTAAATAGTGAAACGGTCTGTCTTTAGGTTTTAAAGGGTTGTTTGCCAAAATGTAATACGCTGGCTGAGTATTTCAACATTTCTCAACGAGAAGTTGTATTGAAGTCCCATTACATCATCAACGTGCCATAGAGAAGAACACCAACCTAACCCCAGTTCACTGGGATGACATTAATACATGACAGCGGAACTTTAATGACTGAAATGTATTGTAGATGAACTGTTTTTGTATGTGCCAAATGGGTAAGACTACAATTTTGCACATTGTACATGCTAACTGTTACCCTTCAAAAGCTGAACTGTATGTGATTGAAATGTAAGGGGTGAATGTTTTTTGATAGGATTCCTACCTTAGGCTAATCAGGTAATTGAAATCAGATCTTAATGCATAAGGAATGGACTTTAAGCACCCTTGTATATAAAATGGTAAACTATTAATATTGT
>XM_036980457.1
GACATGTTGAAATAGACGTAACCTAATTTAATGGTTGCCAAAATTGAATTGGCTTTATGCCAAGTTTTTGGCAAGATATCTGTGCGGCGTTTAATGTAAACTCGTGGGATCAGGCGTTGTGTGAGTAGTTTCAAATTGTGATGGTTGGCTCTATCCGGTGGGGGGAGTTCTGGGCGTTCTGTACGCGTGAAACTAGGCGGGACAAATGAAATGGTCCTCAAATCAACGTATTTTACTCACTTGGGTAGGACTACAGGGCAAAAGTTATTTTGGCTCTCCTTTTACACCCTTAGTGTGAATTAGCTGATCGTCTGGTTCCGAAATTGCATGGGGACATTGACaacatttccatttttttttcaaGGTATTAGGATTGTTTTGTCAGCCAATAGCAAAGCACACGTTTATCACCAATGCCTTTAGCTGCTTGACTTTGCAAGGGGAAGCAAACAAGAATTTGAGAGGGGCACAAATGTAACCTGTGCTATAGGGGGAATGTCTTTGCAGAGCCACAAGCACTGACAAAAACACCAAGGAAAGCATCTACCCAAGACACTGTGCTAACAGATATTCAATCCAACATGGGACCTCTTATGACCCCAACTAAAGGAAGGGAGACTGGGACTGGTGAGCCTTGGACCCCAACCTCCAATTTGAAAATGCTGATGAGCGCTGCCAGCCCTGAGAtcaggaacagagagaaagagctgtGTATGGACTCTGAGGGAGGGGATGCCATGGACCACGAGcttggagaggaaggggagaaacAGATCAGCAGAAAAGAGAAGAGTCTGGGTTTGCTCTGTCACAAGTTCCTGGCCCGCTACCCTGATTATCCCAACCCTGCCCTCAACAACGACATCAGTCTGGATGATGTTGCCACAGAGCTTAATGTGGAGCGCAGGCGCATCTATGACATCATGAATGTGCTGGAGAGCTTGCACATGGTCAGCCGGCTAGCCAAGAATCGCTACACATGGCACGGGCGCGCTAACCTACCACAGACCCTGGCCAAGTTGCGGCAGGTGGGCGAGGAGCATCGCTACGGGCAACAGATGCAGCAGATCCGCCAGCGCAGCCTGGAAAAGGAGTTGGACTCGGACGGTGAGGAGAAAGAGAacgaggaggtggagggaggagaacagGGCCAGAAGGAGATGTTCTTCGTGGAGCTTCCTGGGGTGGAGTTTAAAGCAGCCTCCGTGAACAGCAGGAAGGACAAGTCTCTGAGGGTGATGAGCCAGAAGTTTGTCATGCTGTTCCTGGTGTCCACACCTCGGGTGGTCAGTTTGGATGTGGCTGCCAGGATCCTCATTGGAGAGGACCAGGTGGCTGATCAGGACAAGAGCAAGTTCAAGACTAAGGTCCGCAGGCTGTATGATATAGCCAACGTGCTGCGGAGCCTGAAGCTGATAGAGAAGGTCCATGTgacagaggagaaagggaggaagccAGCCTTTGAATGGACCGGCCCTGAGGACTTCCCCAGTGTGAAGGAGACCACTGCCACTACAGCGACTGCCAAGAGGAAACTTGAGTCTCGTACCTCCGTAGACAACTGTGCCAAaaatctcttctcctctccgggGAGTAAACGCAGCTTCACCCGCCACCCCTCCCTCATCAAACTGGCCAAGAGCATCCAGGAAGACCGGCGAAAGATCAACTCAGCCCCCACCAGCCCTGTCAAGAATGATTCCTCGAGCAGTGAGTTCTTTCCCACCAAAATGGCCCAACTAGCGGCCATCTGTAAGTTCCAGCTTGACCAGCAATCAAACAAGGTTGTTGACAGGACACCGAAGTCTGCAGTTACTGTGACTGAGGCACTGCCAGCTCATCAACAGAAAGCTGCTAAAAAGCCAGGAGCTCCACAGCCCCCAGTATTAACACCCACAGAAGCCCGTGCCAGCACTGTCCACCTCACCCCACGGGCACAGTTCACCCCCCAACCTACTGGGGCAATGTCCTTCCACCCTGCCCAGTGTTCACCCCTCATCCCTATGCTGCTGCCCCAACACCAGGGAGGCGGTCCCTACGCCATCTACATGCACCCCTCGTCCTTCAAGCCACACCCCCTAACCAGGCCTCAGCCAACCAGCCTCGCTGTGCGCTCTATGACCTTCGAGGATAAGACGGGGCAGAGCCCGAGTGATGTCACAGTGCAAGGCCACTCGTCTGCTACGAACAAGCTGCCAACCAGCAGCCCCTCGGCATTAAAACGTGTGTGTTCAGAGAGAACTTCAGAGGAAAGCCCCTCCAAGGCCAAGAGGATTGACCCTAGCACCAGGgacacGTCTCCTAAGCTGTGTGAGATCCTCCAGGCTCGTCTAAAGGCGCGTCGCGGGGGTCTCGTCTCCAGCCGTCCCTCACCCCGAGCCCTCCACCTGGACCCAGAGTTCGTCAACACCCCTGGGAGCTCAGTGGCCGTCGCAGCCAATCAGACACTGGAGCAGAACCTGGAGACCTTcctggagaaggaggagaaggtcaCAACCTCAGACGGCGAGGCAGGGCTCACGCCGGTCAGAGCTGTTCCACTGAACCCTCAACACCTACACacagagACTCTGATCCCCACTGGCTACCTGATCCCCATCTCCCAGCAGTCACTCTTCAGCTACAAAGACCACAACACAGAGAGCAGCAAAGCCTTCACACCCACCTACAACATTTACCACACACCCACCGCAGgCTCTAGACCTCCCCCGATCCAGGAGTTCACCCCTACCAGCCTCCCCCTCCACAGGCCTCCCCCCTCCTCGCCCTTCTCTGCCCAGGGACACCGCTTCCCCAGCCCTGCCATCCTCAACTTTACCCTGCAGAACCTGGGCCTCATACCTGGGCCTGGCTCTGTGCCCACTTACAGCCCTGGCACTGGCCACACCCCGGAGCACCCCAGCTCCATACCCAGCCCCCTGCCTCCCCACCTGGGCCTGCATCAGAGGGGCGGCATGGTGTTTGTTAAGCCCATGTCCCCCGTGCCAGTCCAACACCAGATGACCGGCCCAGGCGGACAACCACTCACGCTAATCAGCCTACAGCAGatgaccACGCCCAAAGGGACGGCCCTCCCCCAGCACAGTTTCTTCCACACCCCGCTGGCTACCGTGGTAACCACCAGCCATGGACACACGGTGCCAGCGGGCACCAAAACCGTTTACATCCCTCAGCGGAAGCTGGACGTCACCGCTGAGGACACCTAAAGACTATGCTGCTACACaaactttctgtgtgtgtgtgtgtgcgcgtcagcCCTTcaacatgtgtgtgtctgtgcatgtctgCATGGCTTTCTATGGTCCGACTGTCGTATTTTTTAAGGCGTACTGTAGGTTGAGTGGTTTTGTGTTTTAGGGTATGTGATGTCGCTATATGAGTTCATCCAAAACTGGTCCATAGGTTATTCCAGCGTTTCCCACACTCAgtgcacgtttttttttttttttgtgctagTACTACACAACTGATTCCAATTATTAAAGCTTGacgattagttgattatttgaattagctgtgtagtgctagggcaaaaaccaaaacatgcagccCTTGGGGTCCTGAGGACTGAGTTTCAGAAGCCCTGGTTTATTCCATTTCTACAGGGGAAGACAAAGTATGTGAACATGGTGTGGAAACTCCATACAGAAACAGCTGCGAGTCACCATCATCACAGCTAGCTCCATATATAACTGATGGCGAGACCAGCCTTGGTAAATACTCTTAACCCTGGGGCTTGATACACGATATGCTGGATATTACTgtgtaatactataatactacaacatACTTTTGATACTGGTGTATATGTATGGAAATATGATTAGGGCTCACCAGTAGGTATTAAACTGGCGAGGGGTGCTTTCTGTGTCTGAATACTAAATAGTGAAACGGTCTGTCTTTAGGTTTTAAAGGGTTGTTTGCCAAAATGTAATACGCTGGCTGAGTATTTCAACATTTCTCAACGAGAAGTTGTATTGAAGTCCCATTACATCATCAACGTGCCATAGAGAAGAACACCAACCTAACCCCAGTTCACTGGGATGACATTAATACATGACAGCGGAACTTTAATGACTGAAATGTATTGTAGATGAACTGTTTTTGTATGTGCCAAATGGGTAAGACTACAATTTTGCACATTGTACATGCTAACTGTTACCCTTCAAAAGCTGAACTGTATGTGATTGAAATGTAAGGGGTGAATGTTTTTTGATAGGATTCCTACCTTAGGCTAATCAGGTAATTGAAATCAGATCTTAATGCATAAGGAATGGACTTTAAGCACCCTTGTATATAAAATGGTAAACTATTAATATTGT
>TU593827
CCTGGCACTGGCCACACCCCGGAGCACCCCAGCTCCATACCCAGCCCCCTGCCTCCCCACCTGGGCCTGCATCAGAGGGGCGGCATGGTGTTTGTTAAGCCCATGTCCCCCGTGCCAGTCCAACACCAGATGACCGGCCCAGGCGGACAACCACTCACGCTAATCAGCCTACAGCAGatgaccACGCCCAAAGGGACGGCCCTCCCCCAGCACAGTTTCTTCCACACCCCGCTGGCTACCGTGGTAACCACCAGCCATGGACACACGGTGCCAGCGGGCACCAAAACCGTTTACATCCCTCAGCGGAAGCTGGACGTCACCGCTGAGGACACCTAAAGACTATGCTGCTACACaaactttctgtgtgtgtgtgtgtgcgcgtcagcCCTTcaacatgtgtgtgtctgtgcatgtctgCATGGCTTTCTATGGTCCGACTGTCGTATTTTTTAAGGCGTACTGTAGGTTGAGTGGTTTTGTGTTTTAGGGTATGTGATGTCGCTATATGAGTTCATCCAAAACTGGTCCATAGGTTATTCCAGCGTTTCCCACACTCAgtgcacgtttttttttttttttgtgctagggcaaaaaccaaaacatgcagccCTTGGGGTCCTGAGGACTGAGTTTCAGAAGCCCTGGTTTATTCCATTTCTACAGGGGAAGACAAAGTATGTGAACATGGTGTGGAAACTCCATACAGAAACAGCTGCGAGTCACCATCATCACAGCTAGCTCCATATATAACTGATGGCGAGACCAGCCTTGGTAAATACTCTTAACCCTGGGGCTTGATACACGATATGCTGGATATTACTgtgtaatactataatactacaacatACTTTTGATACTGGTGTATATGTATGGAAATATGATTAGGGCTCACCAGTAGGTATTAAACTGGCGAGGGGTGCTTTCTGTGTCTGAATACTAAATAGTGAAACGGTCTGTCTTTAGGTTTTAAAGGGTTGTTTGCCAAAATGTAATACGCTGGCTGAGTATTTCAACATTTCTCAACGAGAAGTTGTATTGAAGTCCCATTACATCATCAACGTGCCATAGAGAAGAACACCAACCTAACCCCAGTTCACTGGGATGACATTAATACATGACAGCGGAACTTTAATGACTGAAATGTATTGTAGATGAACTGTTTTTGTATGTGCCAAATGGGTAAGACTACAATTTTGCACATTGTACATGCTAACTGTTACCCTTCAAAAGCTGAACTGTATGTGA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021606840.2 False 4398 mRNA 0.51 14 55904064 55916081
XM_036980457.1 False 4322 mRNA 0.51 13 55904064 55916081
TU593827 True 1245 TUCP 0.47 3 55914343 55915946

Neighbor

gene id symbol gene type direction distance location
LOC110526167 LOC106587078 coding upstream 335897 55563439 ~ 55568167 (+)
LOC110526163 LOC106587071 coding upstream 455928 55375096 ~ 55448136 (+)
LOC110526930 LOC106561912 coding upstream 539322 55351729 ~ 55364742 (+)
LOC110526162 NA coding upstream 768442 55127056 ~ 55135622 (+)
LOC118965082 NA coding upstream 835821 55066200 ~ 55068243 (+)
LOC110526172 LOC106561172 coding downstream 49141 55965222 ~ 55968091 (+)
LOC110526171 LOC106587080 coding downstream 55359 55971440 ~ 55980904 (+)
LOC110526173 LOC106587080 coding downstream 66189 55982270 ~ 55990919 (+)
LOC110526175 LOC106587084 coding downstream 104544 56020625 ~ 56120747 (+)
LOC110526177 LOC106587086 coding downstream 269051 56185132 ~ 56234100 (+)
G523915 NA non-coding upstream 8737 55895064 ~ 55895327 (+)
G523914 NA non-coding upstream 10119 55893676 ~ 55893945 (+)
G523908 NA non-coding upstream 14128 55889697 ~ 55889936 (+)
G523904 NA non-coding upstream 20863 55882971 ~ 55883201 (+)
G523896 NA non-coding upstream 34499 55869362 ~ 55869565 (+)
G523936 zdh13 non-coding downstream 10286 55926367 ~ 55927215 (+)
G523939 zdh13 non-coding downstream 14647 55930728 ~ 55940668 (+)
G523959 NA non-coding downstream 53357 55969438 ~ 55970160 (+)
G523529 NA other upstream 419457 55484249 ~ 55484607 (+)
LOC110526161 LOC106587065 other upstream 963191 54793125 ~ 54954478 (+)
G521914 NA other upstream 1633805 54269925 ~ 54270259 (+)
G521552 prmt3 other upstream 1948934 53925942 ~ 53955130 (+)
G525645 NA other downstream 1660003 57576084 ~ 57581070 (+)
G525861 LOC106587122 other downstream 1688027 57604108 ~ 57606367 (+)
fbxo3 fbxo3 other downstream 1705767 57621795 ~ 57635241 (+)
LOC110526214 LOC106587124 other downstream 1723393 57639437 ~ 57642487 (+)

Expression


Co-expression Network