LOC110526175 (LOC106587084)


Basic Information

Item Value
gene id LOC110526175
gene name LOC106587084
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 56020625 ~ 56120747 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021606851.2
ACCGCCACCTTCTGTACTAGAGAAGGAGCGCATGTAAACTGATTGAAACGTGCCTATCATCACCATTGCGGAGCTCCATAAACGTGTTCGCCCGACGGGAATTCAAATGTGTAGGCTACTACAGTAAGGTTACTGATATATTTGAAAGCGGTTCTAGTTTTACAACGGGAACATCAGGGacgagagagacaaatagagagagcgagaaagagtgaACTTTCAAAGTTGGCCTACTCACCAAGTATTCTACGGCGAGGTCCATTATTGACGAGAAAATATAAATAGAGAGCTGCGGCGCTGCAGGATGGCTGAGGGCTGCATGAGGAGCCTGCGCTACGGTATGGTCTTCTTCAACCTCCTCTTCTGGTTGGGGGGTTGTGGAATACTGGGCGTGGGGGTATGGCTGTCAGTGACCCAGGGCAACTTTGCCAcactctcctcatccctcccatccctctcagCAGCCAATCTACTCATTGCGGTCGGGACCATCATCATGGTGATTGGTTGCCTCGGCTGTGTCGGAGCTGTCAAAGAAAGTCGTCCGCTATTGCTGAGTttctTCATCCTCCTTCTGCTGATCTTCTTCTTGGAGATTCTGTCCATCATGCTCTTCTTTGTTTACCAAGACCAGGTTGATCACTATGCCCAGAGGGATTTGAAGAGGGGACTCCAGCTCTTTGGCACCGAAGGCAACGTAGGCTTGACCAACGCCTGGATGATCGTACAAACTGATTTCCGCTGCTGTGGCGTGACCAACCATACGGACTGGTTTGAGGTGTACAATGCCAGCCGTGTGCCCGATTCCTGCTGTCTGGAGTACAGCGACAACTGTGGCCTCGTGAACCCAGGGACCTGGTGGACCGCGCCATGTTACGAGCGGGTGAAGGATTGGATACAACAGAATCTGGTGGCCCTGTGGATATTTGCCTTGTGTACGGCactcacacagATTCTGGGTTTGGTCTTCTCTATGACGATGTTCTGCCAAGCAGTCAAAGTGGAGACCTTCTACGCCTAGCAGCGTCCCCTCTTTGCCCCAAAGGACTCTGTGAATGAGTgaggcacacacctctctctctctctctctactctgtgacGGACCTTTCTCACCAACGACTCGCCGACCAATCCTCATGTAACATCTTCACAACGACCTGTACTGTAAAACAAGCACAATGTACTATCGGGAGCCAGTGGATAGTTTTTTTGCTGAATTAAATGTTATTCGCTCATTTTGTGGTCAacatatatatgtaatatataggAGTAATCCTTTTTTAAAGATATGTTTTCAATGATTTTGAATCATTCTATAACCGTAAATGTttttgaaaggagaggagagctaaGGAATGCAGGTCAAGAGTGCATTTATTAAGACAGGCCATATGAGTAGTAAAGTGCATGGCTCTTATAATGGTGTTAGTAAATGTTTGGCTCATCCAAATCAACTTTTCCTTGAGTTTCTTTTTTTATTCTAACGTCAAGAAATACTGTAAATTATAGTGCATTGTAACAGTGAATTCATAATGATACTTATTTAATAAACGAGTTCATCTGTAGGGA
>XM_036980465.1
GTGCTGAAATAGTGTGAGTGAATGAGAGACAgtaagcgagagaaagagagggagggagggtggaagggagagggagagcgagagggagctgGACGGTTGCTATAACACTGcagtctttttttcttcttccctcATCCAAGgaaggtgtctctctctcttcttctggaAATGACCCTGGCAGATACTTCACTCTAGTTACCCAcctagagaggaagaggagaaaacaAACAAAAGGGGTGcacagaagggagggagagaagaggagagggaaccTGAATGCAATGCTCTACTGGCTGGACTGTGAAACTGATAtacagaaagggagggagacagaggtgaAGAAGGAGCGAGGGAGTGAGGCAAGTAGCAGGTAGACCTGCGAAACAGCAGCTGCGGGAAGGGGAACAGAGGAAAAGCAGAAAGGGGGAgttagagaagagaaagagagaacgaacCAGGACGAACAGGAAAACCAGGCAAGGAAAGTGGTAGAGCGCTCACCTAAAGGAAACCAATGAATTCTCTCCTCATTTCAGTTACCTATCCTTTTCTCACGTATCTTTTCCTTTCACTCATCCCCACGCATTCACCTCAGTGTTGTCTCCTGGTCTGCACATCTTCTCTCCTTTTAACTTTTCTGCATGTGAGGGAAAGTGGAGCCAAGACAATGGACACTGGGGAACATTCAGAATCAATTCCAACTGGATGTAGTACTAGCGTGCGGTCTTAATGGAGAAGTGGTTCTGGTGTAAAAGAGACTGATTGGCTAaaaccctgttgttgttgtcaagAGTGACTGTTTTCTCTGCCAGAGCGCACCTGCTCCGGAATTTCTAATGGCACCAGGTGTGACGTATCACTCAGCCAACCGATCAGATGAGAGCAGTTCTGGAAGTGCCAAGCGCTCTTGCAATTATGTGTGTCCGATTCACCTGAGATTAGCAGGAATTGGAAAAACTAGAGCTTCTTTGTGATAGACAAGTGTAGTTGTGGGATTCAGGAAAGGAACATATAATGAACAGGTGTTGTAGGATTAAGCAACGTTAAAACGGGAATATACAGGTGTAGGATTACGAATGAAGGCACTCTGGATAACCACAGATGACAAGACATCGTCCACAGACGAATTTGAGGTGATGTGTTTTAATCTTAGCTGGTCTATCACTGCAGGGGCACAGTTGGACTGCATGCCTAATCACGCTTCAGTTTCTGTGGTGAAAACACTGTAGGCTGGTTTGCTTAGAAACTATTGGGAACAGGTGCTATTCCACATTACTGGCACCACAACTATGCACATTTGTCCCCTGAGGACACGCTATTTGTACTTTGTGTCTCTGTATAGGTCTTAAGTGACTTTTTTTTGTGTGGGCTCTCAAAGACCTCTTGAAGCTCTTGAGGGGGTTGAAATAAAACTTTGGCTGTTGCTAGCGTCTCACCTCTGGTTGGTCCATGAGGCGCTCGAGCACGGACGAGACGCCGTACCGGCGCAGTCCCTCACTGGACAGCAAGCCCGAGACGCCACCCTTCAACTCGGGTTTCCACAGCTACAGTGGCGAGTACGAGTATAAACGTCCGCCCTTTGCATTCGGCTTCCACACGGCGCCGGGTCCGCAGGCGGCTAAAGGCCGCTACACCACCTCGCAGGGGAAGAAGTATGTGGTGTTTTACCTGGACCTCTCCTTCATCTTCCTCCTAGAGCTGCGGCGCTGCAGGATGGCTGAGGGCTGCATGAGGAGCCTGCGCTACGGTATGGTCTTCTTCAACCTCCTCTTCTGGTTGGGGGGTTGTGGAATACTGGGCGTGGGGGTATGGCTGTCAGTGACCCAGGGCAACTTTGCCAcactctcctcatccctcccatccctctcagCAGCCAATCTACTCATTGCGGTCGGGACCATCATCATGGTGATTGGTTGCCTCGGCTGTGTCGGAGCTGTCAAAGAAAGTCGTCCGCTATTGCTGAGTGTTGATCACTATGCCCAGAGGGATTTGAAGAGGGGACTCCAGCTCTTTGGCACCGAAGGCAACGTAGGCTTGACCAACGCCTGGATGATCGTACAAACTGATTTCCGCTGCTGTGGCGTGACCAACCATACGGACTGGTTTGAGGTGTACAATGCCAGCCGTGTGCCCGATTCCTGCTGTCTGGAGTACAGCGACAACTGTGGCCTCGTGAACCCAGGGACCTGGTGGACCGCGCCATGTTACGAGCGGGTGAAGGATTGGATACAACAGAATCTGGTGGCCCTGTGGATATTTGCCTTGTGTACGGCactcacacagATTCTGGGTTTGGTCTTCTCTATGACGATGTTCTGCCAAGCAGTCAAAGTGGAGACCTTCTACGCCTAGCAGCGTCCCCTCTTTGCCCCAAAGGACTCTGTGAATGAGTgaggcacacacctctctctctctctctctactctgtgacGGACCTTTCTCACCAACGACTCGCCGACCAATCCTCATGTAACATCTTCACAACGACCTGTACTGTAAAACAAGCACAATGTACTATCGGGAGCCAGTGGATAGTTTTTTTGCTGAATTAAATGTTATTCGCTCATTTTGTGGTCAacatatatatgtaatatataggAGTAATCCTTTTTTAAAGATATGTTTTCAATGATTTTGAATCATTCTATAACCGTAAATGTttttgaaaggagaggagagctaaGGAATGCAGGTCAAGAGTGCATTTATTAAGACAGGCCATATGAGTAGTAAAGTGCATGGCTCTTATAATGGTGTTAGTAAATGTTTGGCTCATCCAAATCAACTTTTCCTTGAGTTTCTTTTTTTATTCTAACGTCAAGAAATACTGTAAATTATAGTGCATTGTAACAGTGAATTCATAATGATACTTATTTAATAAACGAGTTCATCTGTAGGGA
>XM_021606850.2
GTGAGTGAATGAGAGACAgtaagcgagagaaagagagggagggagggtggaagggagagggagagcgagagggagctgGACGGTTGCTATAACACTGcagtctttttttcttcttccctcATCCAAGgaaggtgtctctctctcttcttctggaAATGACCCTGGCAGATACTTCACTCTAGTTACCCAcctagagaggaagaggagaaaacaAACAAAAGGGGTGcacagaagggagggagagaagaggagagggaaccTGAATGCAATGCTCTACTGGCTGGACTGTGAAACTGATAtacagaaagggagggagacagaggtgaAGAAGGAGCGAGGGAGTGAGGCAAGTAGCAGGTAGACCTGCGAAACAGCAGCTGCGGGAAGGGGAACAGAGGAAAAGCAGAAAGGGGGAgttagagaagagaaagagagaacgaacCAGGACGAACAGGAAAACCAGGCAAGGAAAGTGGTAGAGCGCTCACCTAAAGGAAACCAATGAATTCTCTCCTCATTTCAGTTACCTATCCTTTTCTCACGTATCTTTTCCTTTCACTCATCCCCACGCATTCACCTCAGTGTTGTCTCCTGGTCTGCACATCTTCTCTCCTTTTAACTTTTCTGCATGTGAGGGAAAGTGGAGCCAAGACAATGGACACTGGGGAACATTCAGAATCAATTCCAACTGGATGTAGTACTAGCGTGCGGTCTTAATGGAGAAGTGGTTCTGGTGTAAAAGAGACTGATTGGCTAaaaccctgttgttgttgtcaagAGTGACTGTTTTCTCTGCCAGAGCGCACCTGCTCCGGAATTTCTAATGGCACCAGGTGTGACGTATCACTCAGCCAACCGATCAGATGAGAGCAGTTCTGGAAGTGCCAAGCGCTCTTGCAATTATGTGTGTCCGATTCACCTGAGATTAGCAGGAATTGGAAAAACTAGAGCTTCTTTGTGATAGACAAGTGTAGTTGTGGGATTCAGGAAAGGAACATATAATGAACAGGTGTTGTAGGATTAAGCAACGTTAAAACGGGAATATACAGGTGTAGGATTACGAATGAAGGCACTCTGGATAACCACAGATGACAAGACATCGTCCACAGACGAATTTGAGGTGATGTGTTTTAATCTTAGCTGGTCTATCACTGCAGGGGCACAGTTGGACTGCATGCCTAATCACGCTTCAGTTTCTGTGGTGAAAACACTGTAGGCTGGTTTGCTTAGAAACTATTGGGAACAGGTGCTATTCCACATTACTGGCACCACAACTATGCACATTTGTCCCCTGAGGACACGCTATTTGTACTTTGTGTCTCTGTATAGGTCTTAAGTGACTTTTTTTTGTGTGGGCTCTCAAAGACCTCTTGAAGCTCTTGAGGGGGTTGAAATAAAACTTTGGCTGTTGCTAGCGTCTCACCTCTGGTTGGTCCATGAGGCGCTCGAGCACGGACGAGACGCCGTACCGGCGCAGTCCCTCACTGGACAGCAAGCCCGAGACGCCACCCTTCAACTCGGGTTTCCACAGCTACAGTGGCGAGTACGAGTATAAACGTCCGCCCTTTGCATTCGGCTTCCACACGGCGCCGGGTCCGCAGGCGGCTAAAGGCCGCTACACCACCTCGCAGGGGAAGAAGTATGTGGTGTTTTACCTGGACCTCTCCTTCATCTTCCTCCTAGAGCTGCGGCGCTGCAGGATGGCTGAGGGCTGCATGAGGAGCCTGCGCTACGGTATGGTCTTCTTCAACCTCCTCTTCTGGTTGGGGGGTTGTGGAATACTGGGCGTGGGGGTATGGCTGTCAGTGACCCAGGGCAACTTTGCCAcactctcctcatccctcccatccctctcagCAGCCAATCTACTCATTGCGGTCGGGACCATCATCATGGTGATTGGTTGCCTCGGCTGTGTCGGAGCTGTCAAAGAAAGTCGTCCGCTATTGCTGAGTttctTCATCCTCCTTCTGCTGATCTTCTTCTTGGAGATTCTGTCCATCATGCTCTTCTTTGTTTACCAAGACCAGGTTGATCACTATGCCCAGAGGGATTTGAAGAGGGGACTCCAGCTCTTTGGCACCGAAGGCAACGTAGGCTTGACCAACGCCTGGATGATCGTACAAACTGATTTCCGCTGCTGTGGCGTGACCAACCATACGGACTGGTTTGAGGTGTACAATGCCAGCCGTGTGCCCGATTCCTGCTGTCTGGAGTACAGCGACAACTGTGGCCTCGTGAACCCAGGGACCTGGTGGACCGCGCCATGTTACGAGCGGGTGAAGGATTGGATACAACAGAATCTGGTGGCCCTGTGGATATTTGCCTTGTGTACGGCactcacacagATTCTGGGTTTGGTCTTCTCTATGACGATGTTCTGCCAAGCAGTCAAAGTGGAGACCTTCTACGCCTAGCAGCGTCCCCTCTTTGCCCCAAAGGACTCTGTGAATGAGTgaggcacacacctctctctctctctctctactctgtgacGGACCTTTCTCACCAACGACTCGCCGACCAATCCTCATGTAACATCTTCACAACGACCTGTACTGTAAAACAAGCACAATGTACTATCGGGAGCCAGTGGATAGTTTTTTTGCTGAATTAAATGTTATTCGCTCATTTTGTGGTCAacatatatatgtaatatataggAGTAATCCTTTTTTAAAGATATGTTTTCAATGATTTTGAATCATTCTATAACCGTAAATGTttttgaaaggagaggagagctaaGGAATGCAGGTCAAGAGTGCATTTATTAAGACAGGCCATATGAGTAGTAAAGTGCATGGCTCTTATAATGGTGTTAGTAAATGTTTGGCTCATCCAAATCAACTTTTCCTTGAGTTTCTTTTTTTATTCTAACGTCAAGAAATACTGTAAATTATAGTGCATTGTAACAGTGAATTCATAATGATACTTATTTAATAAACGAGTTCATCTGTAGGGA
>TU593913
tgacacttatggaatcatgtattaacccaaaaagttttaaacaaatcaagatatatattttctatttcagattcttcaaagtagccacactttgcttTGATGGCAGCTTttcacattcttggcattctctcaaccagcttcatgaggtagtcacctggaatgcatttcaattaacaggtgtgccatgttaaaagtacatttgtggaatttctttccttaatgcgtttgagccaatcagttgtgttgtgacaaggtaggggtggcatacagaagatagcactatttggtaaaataccaagtccatattatggcaagaacagctcaaataagcaaagagaaatgacagtccatcattactttaagacatgaaggtcagtcaatagacaatttcaagaactttgaaagtttcttcaagtgcagtcacataaaccatcaagcgctatgatgaaactggctctcatgaggactgccacaggaaaggaagacctagagttcattagagttatcagcctcagaaattgcagtccacataaatgtttcacagagttcaagtaacagacacatctcaacaccaactgttcagaggagactgctgcaaagaaaccactacaaaaggacaccaataagaagaagagactggtaacgctgtctgtgatttatttagaattcaaggcacacttaaccagcatggctaccacagcattctgcagcgatacgccatcgcatctggtttgtgcttagtgggattatcatttgtttttcaacaggacaatgacccaacacacctccaggctgtgaaagggctaattgaccaagaaggagagtgatggagtgctgcatcagatgacctggccttcacaatcacccgacctcaacccaattgagatggtttgggatgagttaggccgcaaagcagccaacaagtgctcagcatatgtgggaacttcttcaagactgttggaaaagcattccaggtgaagctggttgagagaatgccaagagtgtgcaaagctgtcatcaagTTCCGCTGCTGTGGCGTGACCAACCATACGGACTGGTTTGAGGTGTACAATGCCAGCCGTGTGCCCGATTCCTGCTGTCTGGAGTACAGCGACAACTGTGGCCTCGTGAACCCAGGGACCTGGTGGACCGCGCCATGTTACGAGCGGGTGAAGGATTGGATACAACAGAATCTGGTGGCCCTGTGGATATTTGCCTTGTGTACGGCactcacacagATTCTGGGTTTGGTCTTCTCTATGACGATGTTCTGCCAAGCAGTCAAAGTGGAGACCTTCTACGCCTAGCAGCGTCCCCTCTTTGCCCCAAAGGACTCTGTGAATGAGTgaggcacacacctctctctctctctctctactctgtgacGGACCTTTCTCACCAACGACTCGCCGACCAATCCTCATGTAACATCTTCACAACGACCTGTACTGTAAAACAAGCACAATGTACTATCGGGAGCCAGTGGATAGTTTTTTTGCTGAATTAAATGTTATTCGCTCATTTTGTGGTCAacatatatatgtaatatataggAGTAATCCTTTTTTAAAGATATGTTTTCAATGATTTTGAATCATTCTATAACCGTAAATGTttttgaaaggagaggagagctaaGGAATGCAGGTCAAGAGTGCATTTATTAAGACAGGCCATATGAGTAGTAAAGTGCATGGCTCTTATAATGGTGTTAGTAAATGTTTGGCTCATCCAAATCAACTTTTCCTTGAGTTTCTTTTTTTATTCTAACGTCAAGAAATACTGTAAATTATAGTGCATTGTAACAGTGAATTCATAATGATACTTATTTAATAAACGAGT

Function

NR:

description
PREDICTED: tetraspanin-4-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021606851.2 False 1569 mRNA 0.46 8 56020625 56120747
XM_036980465.1 False 2903 mRNA 0.48 6 56036679 56120747
XM_021606850.2 False 2965 mRNA 0.48 7 56036692 56120747
TU593913 True 1842 TUCP 0.42 4 56110279 56120734

Neighbor

gene id symbol gene type direction distance location
LOC110526173 LOC106587080 coding upstream 31171 55982270 ~ 55990919 (+)
LOC110526171 LOC106587080 coding upstream 39721 55971440 ~ 55980904 (+)
LOC110526172 LOC106561172 coding upstream 52534 55965222 ~ 55968091 (+)
LOC110526169 LOC106587076 coding upstream 104544 55904064 ~ 55916081 (+)
LOC110526167 LOC106587078 coding upstream 452458 55563439 ~ 55568167 (+)
LOC110526177 LOC106587086 coding downstream 64385 56185132 ~ 56234100 (+)
LOC110525039 NA coding downstream 200956 56321703 ~ 56328003 (+)
nr1h3 nr1h3 coding downstream 211958 56332705 ~ 56357630 (+)
LOC110526181 madd coding downstream 241284 56362031 ~ 56445865 (+)
LOC110526184 LOC106587093 coding downstream 433103 56553850 ~ 56562955 (+)
G523959 NA non-coding upstream 50465 55969438 ~ 55970160 (+)
G523939 zdh13 non-coding upstream 79957 55930728 ~ 55940668 (+)
G524069 NA non-coding downstream 6772 56127519 ~ 56127821 (+)
G524073 NA non-coding downstream 19182 56139929 ~ 56140478 (+)
G524074 LOC102208280 non-coding downstream 19949 56140696 ~ 56142206 (+)
G524139 NA non-coding downstream 157501 56278248 ~ 56281973 (+)
G523529 NA other upstream 536018 55484249 ~ 55484607 (+)
LOC110526161 LOC106587065 other upstream 1079752 54793125 ~ 54954478 (+)
G521914 NA other upstream 1750366 54269925 ~ 54270259 (+)
G525645 NA other downstream 1455337 57576084 ~ 57581070 (+)
G525861 LOC106587122 other downstream 1483361 57604108 ~ 57606367 (+)
fbxo3 fbxo3 other downstream 1501101 57621795 ~ 57635241 (+)
LOC110526214 LOC106587124 other downstream 1518727 57639437 ~ 57642487 (+)
G525912 NA other downstream 1582711 57703458 ~ 57710340 (+)

Expression


Co-expression Network