LOC110526177 (LOC106587086)


Basic Information

Item Value
gene id LOC110526177
gene name LOC106587086
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 56185132 ~ 56234100 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021606855.2
GTGGAGTCGACACGACCTACTTACTGTACAGTCATAGACTCCAGTGGACCAACTACTCATTAGTTTAGCATTTTGCGCTTCCCCCTCTCTGGTTTGGACTATCGAAGGAATCCCTGAAAAATAGAATTCGGAATGAAAACGACCAAAAACTAGTTTTACACATCTATATCTATTATTTTGGACACATCAACGCCTTGCTACTTGTAACAACACAGCCGCAGCATGGGGGCACCAGCGACAGCGTACGACGAGAAGAAGGAAACATGCGGAACCGTCTGTCTGAAGTATCTCCTATTCACATTCAACTTCCTCTTCTGGCTAGCAGGGGGCGTGGTGATGGCAGTGGGTATCTGGACGCTGGTGGAGAAGAGCGACTACATCAGCCTGCTCTCCTCCGCGACCTACGCCGCCTCCGCCTATATCCTAATCCTTGCCGGGGCCATCGTCATGGTGACTGGAGTGCTGGGCTGCTGCGCCACCTTCAAGGAgcagaggaggctgctgagagtGTACTTTGTCTTGCTGCTGTGTATCTTCCTGCTGGAGATCCTCGCCGGTGTCCTGGCCTACATCTATTACCAGCAGCTCAATGAGGAGCTGAAACAGAACCTGCGGGAGACCATGGTGCAGAAGTACAGGCAGCCAGAGCAGGAGCACATCACCAAAGCAGTGGACAAGCTGCAGCACGAGTTTAAGTGCTGTGGCAGCAACAGCTCATCGGACTGGGGCGAGAGCGTGTGGATCCGCACCAGTGAGGCAGATGGCAGGCTGGTGCCGGATAGCTGCTGTAAAACCCAGACTCTAAACTGCGGCCGCAGGGACCACCCATCAAACATCTACAAGGTGGAGggggGTTGTATCACTAAACTGGAGAACTTCATTTTGGACCACCTGAAGATCATTGGAGCGGTGGGCGTGGGCATCGCCTGTGTACAGattGTGGGGATGGTGTTTACTTGCTGTCTATATCGGAGTTTGAAGGCAGAGCCGTACTGAGAGTAGAACACGAAGAGAAGGAATGGGGAGGGGTCTAGTCTCTGCCACCCAGTGTCATCATATCCCAGCGACCCCATTTAGTCATGGGGTCTACCACTGTGCCATGCAAACAGAAGAGGACGATATGTGTAAAGGTCTAGGATACACTTATGATAGTGTTTCTCAATCCATTCCATGGGGGGACCATTTTGGTTCTAGCCTAGCACTAACTCCCCTGATTCAACAGGGGTTGTATTGGGCTAGAATTCCTAGGGGGTCCCAACTTGGAATGGATAATCAGATTATTTTCAAGACATTACATGCTATCTGATCTACAATGCTCTATATTTTGGTAGTCTGCAACAACAGAGCAGTTGGTATATACTAGTGTGATGTAAAGATCAGTGGCACAGGCCATTTTGGTCATCAGAACAGCTTGTCTTAACATTGCAATAATCATGACTGTGGCTTAATGAGCAAGATCTGACCTCTGGGGCCGATTACCACGGCAACACATTTTCTTTATACATCAAGTAGCTGATTATACATTTACACACGTCTTTTACTCGGTTTCTCAACTTTTTAATTGttggtttatttaaaaaaaaaatgtatttatcttTTAATACAAGGGATTTCTCCACTTATGCCAAAGTTGTCGTCAACACTGACTTTCTGTAAAATCGTATCAAACGGACTACTCCTGCAAGCCTTTttcatgtatactgaacaaaaatataaatgcaataatttcaaagatttttctgagttacagttatcgatttcacataactgggcaggtgtgcagccatgggtggccctgggaaggcataggcccacccacttgtgagccaggcccactcactggggagccagacccagccaatcagaatgagtttttccccacaaacgacattacagacagaaatactccaacacccctcccccctcagacgatcccacaggtgaagaagccagatgcgGAGGGCCTCGGCtgacgtggttacacatggtctggtTGTGAGGCCTGTAGGACGTACTGCCATAttttctaaaacaatgttggcggaggcttatggtagagaaattaacattaaattatctggcaacagctcttgtggacattcctgcagtcagcatgccaattgtacgctccctcaaaacttgagacaactgtgacattgtgttgtgtgacaaaacggcacactttagccttctattgtccccagcacaaggtgcacctgtgtaatgatcatgctgtttaatcagcttcttaatatgccacacctgtcaggtggatgtattatcttggcaaaggagaaatgctcacaaactgggatgtaaacaaatttgtgcacaagatTTGAGAGAAAGacactttttgtgcatatggaaattttctgggatcttttatttcagctcatgaaacatgggaccaacacattacatgttgcgtttatatttttgtttaatatATATTCTGATTGTGTGCCtttttgtagattttttttaaaatgacGTTTTGCTTTTATTCAAAccataaatgttattttattgtgtatttAACAGACCAGTAGGATGACTTGATTATATGTAAAATGTGCCCCAAAGACACAAAAAAACTAATCAAACTGCTGTATTGCTGTATCAGTGTTCTACTATACATGGAGGTATTTAGCTGAAATAAACACAATTTAACCTGT
>TU594032
gctatgaaaagccaacctacatttactcctgagTACTTTGTCTTGCTGCTGTGTATCTTCCTGCTGGAGATCCTCGCCGGTGTCCTGGCCTACATCTATTACCAGCAGGTAATGAATGACTTGATTCACCACCTGATTCCATCGCCAGTAACACTATCTATACCCAGAGCCTGACCAGAGACAGAAGAGTgtatgtttgtaaaaaaaaactgaaaccaCAACAAGGGAAGGTTCATGGATAatgtcccagtctctctctttctccatctgttgcttttctctctctctctcccgctctgcttTCCCATGCCTGCCACCTCTTGTTGTAGCATTTCTGGAGTGCGATGATATCACTAAGATGTGGTTCCCACTACTATCCTTTTTACTACTATATTTCCCTGCTGTGTAGATGTTCGACCTGCAGGAATGTTATCTTACCAGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021606855.2 False 2678 mRNA 0.45 8 56185132 56234100
TU594032 True 442 lncRNA 0.45 2 56208278 56229652

Neighbor

gene id symbol gene type direction distance location
LOC110526175 LOC106587084 coding upstream 64385 56020625 ~ 56120747 (+)
LOC110526173 LOC106587080 coding upstream 195678 55982270 ~ 55990919 (+)
LOC110526171 LOC106587080 coding upstream 204228 55971440 ~ 55980904 (+)
LOC110526172 LOC106561172 coding upstream 217041 55965222 ~ 55968091 (+)
LOC110526169 LOC106587076 coding upstream 269051 55904064 ~ 55916081 (+)
LOC110525039 NA coding downstream 87603 56321703 ~ 56328003 (+)
nr1h3 nr1h3 coding downstream 98605 56332705 ~ 56357630 (+)
LOC110526181 madd coding downstream 127931 56362031 ~ 56445865 (+)
LOC110526184 LOC106587093 coding downstream 319750 56553850 ~ 56562955 (+)
ptpmt1 ptpmt1 coding downstream 712254 56946354 ~ 56951411 (+)
G524074 LOC102208280 non-coding upstream 42926 56140696 ~ 56142206 (+)
G524073 NA non-coding upstream 44654 56139929 ~ 56140478 (+)
G524069 NA non-coding upstream 57311 56127519 ~ 56127821 (+)
G524139 NA non-coding downstream 44148 56278248 ~ 56281973 (+)
G524199 NA non-coding downstream 90837 56324937 ~ 56325170 (+)
G524303 NA non-coding downstream 350176 56584276 ~ 56589481 (+)
G524371 NA non-coding downstream 443009 56677109 ~ 56756337 (+)
G524519 NA non-coding downstream 654449 56888549 ~ 56889643 (+)
LOC110526167 LOC106587078 other upstream 618633 55563439 ~ 55568167 (+)
G523529 NA other upstream 700525 55484249 ~ 55484607 (+)
LOC110526161 LOC106587065 other upstream 1244259 54793125 ~ 54954478 (+)
G525645 NA other downstream 1341984 57576084 ~ 57581070 (+)
G525861 LOC106587122 other downstream 1370008 57604108 ~ 57606367 (+)
fbxo3 fbxo3 other downstream 1387748 57621795 ~ 57635241 (+)
LOC110526214 LOC106587124 other downstream 1405374 57639437 ~ 57642487 (+)
G525912 NA other downstream 1469358 57703458 ~ 57710340 (+)

Expression


Co-expression Network