Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110525039 |
| gene name | NA |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048570.1 |
| NCBI id | CM023224.2 |
| chromosome length | 101096859 |
| location | 56321703 ~ 56328003 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| id | name | namespace |
|---|---|---|
| GO:0005576 | extracellular region | cellular_component |
| GO:0005179 | hormone activity | molecular_function |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| LOC110525039 | True | 444 | mRNA | 0.50 | 2 | 56321703 | 56328003 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110526177 | LOC106587086 | coding | upstream | 87603 | 56185132 ~ 56234100 (+) |
| LOC110526175 | LOC106587084 | coding | upstream | 200956 | 56020625 ~ 56120747 (+) |
| LOC110526173 | LOC106587080 | coding | upstream | 332249 | 55982270 ~ 55990919 (+) |
| LOC110526171 | LOC106587080 | coding | upstream | 340799 | 55971440 ~ 55980904 (+) |
| LOC110526172 | LOC106561172 | coding | upstream | 353612 | 55965222 ~ 55968091 (+) |
| nr1h3 | nr1h3 | coding | downstream | 4702 | 56332705 ~ 56357630 (+) |
| LOC110526181 | madd | coding | downstream | 34028 | 56362031 ~ 56445865 (+) |
| LOC110526184 | LOC106587093 | coding | downstream | 225847 | 56553850 ~ 56562955 (+) |
| ptpmt1 | ptpmt1 | coding | downstream | 618351 | 56946354 ~ 56951411 (+) |
| ndufs3 | ndufs3 | coding | downstream | 626131 | 56954134 ~ 56960155 (+) |
| G524139 | NA | non-coding | upstream | 39730 | 56278248 ~ 56281973 (+) |
| G524074 | LOC102208280 | non-coding | upstream | 179497 | 56140696 ~ 56142206 (+) |
| G524073 | NA | non-coding | upstream | 181225 | 56139929 ~ 56140478 (+) |
| G524069 | NA | non-coding | upstream | 193882 | 56127519 ~ 56127821 (+) |
| G524303 | NA | non-coding | downstream | 256273 | 56584276 ~ 56589481 (+) |
| G524371 | NA | non-coding | downstream | 349106 | 56677109 ~ 56756337 (+) |
| G524519 | NA | non-coding | downstream | 560546 | 56888549 ~ 56889643 (+) |
| G524521 | NA | non-coding | downstream | 564383 | 56892386 ~ 56892635 (+) |
| G524469 | NA | non-coding | downstream | 565242 | 56893245 ~ 56895396 (+) |
| LOC110526169 | LOC106587076 | other | upstream | 405757 | 55904064 ~ 55916081 (+) |
| LOC110526167 | LOC106587078 | other | upstream | 755204 | 55563439 ~ 55568167 (+) |
| G523529 | NA | other | upstream | 837096 | 55484249 ~ 55484607 (+) |
| LOC110526161 | LOC106587065 | other | upstream | 1380830 | 54793125 ~ 54954478 (+) |
| G525645 | NA | other | downstream | 1248081 | 57576084 ~ 57581070 (+) |
| G525861 | LOC106587122 | other | downstream | 1276105 | 57604108 ~ 57606367 (+) |
| fbxo3 | fbxo3 | other | downstream | 1293845 | 57621795 ~ 57635241 (+) |
| LOC110526214 | LOC106587124 | other | downstream | 1311471 | 57639437 ~ 57642487 (+) |
| G525912 | NA | other | downstream | 1375455 | 57703458 ~ 57710340 (+) |
