LOC110526184 (LOC106587093)


Basic Information

Item Value
gene id LOC110526184
gene name LOC106587093
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 56553850 ~ 56562955 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021606897.2
CCCCCTTTCCTAGCctattgttccctctctctcatacgcTGGCTGTTTCACTGAGAGATCTCACTGCATTCCGCACACCTGTTAGCTGTAACCATCTGACCAAGCACCAGAAAAAGAACAGGAACGAGAGACGGGATATGGATCTTTACGCAATCATCAGTGCTGTTTTGCTTCTGCAACTGCAAGGTTTTCATGTGGCCTTGCTCCAGGCACCAACAGACTCTCCAGGACAAACGATTGATCAAAGTTGGCTTCGTCAATTGGTCAAATCCAAGCTAAACAAGACAACAtcacaagctcagtccaatgacaTTGTTGATATGACAATGGAGGGTACTGAGTCAACAGATGACTCTGAAGGGGTTATCGCAAATGGCTCTGTGTCATTTAGTGGGGAACAGGACAACGTCCAGGACACAAATGAGACTTCAGGTGGTGTGACAATTGGCACCACAATGCCACCAGGGTTGCCAAATGCTACAGCAGAGGAACCTCCAGAAACCACTGTTGCACCAGAACCCCCAGTGAGTGTTGCCTTAAACTCAAGCCAAGTTTCCAATGCAACCGGAGAGGACAGTGGATTCCAAAATGCCACCACTACTGCAATCACAGAAAACTCAAATGGCTCTAATTCCATGTCCAATTACACTGAATTAAATGAGACAACCACAGCTCCAGACACCAATAGCACAGAGCAGATTGGTCCAGATCATCCTGGTGCTGAGAACAGGGTAACCAACAGTACAGAGGACTTCCATAATGTAACGACTGCAGTACCAGAGCCATCCAGTGAACCATCCACAGCTTCCCCCTCCACAAAGCTTCCCTTGGACTCCCCTGGGACTACAACTGCCAAAATCACCCCAGAAACTACAACAACCACAGGTCCCAGCACAATAACAGCCATGATGAAAACTGGTGCCGCTTCAGGAAGCAACTCTGCGAGAGGCTTGGACTCAGATGCAGTGCAGAACAGGAAGAGGAGTGAGGCATGGGCTGCCATCCTGGGCATAGGAGTGGCAGTGTGCTTCGTGGCGATGGTGGTCTACGTCATCCTGAGAAGGAGAGACCGACGGGATTTCACACACAGGAAGCTTGTTGAGGAAATCCCCTCAGACCCAGTTCAACGACTGAACAACCCTGAGCCCGTGGACTTGAAATATGATGGTTCCGCCTACTACAATCGTGGACTCCAAATGGACAATATCCCAATGGACCACTTTCCACACGGACATCAAAATTGAGAAGGACTCCAAGACTAACCTTAAACACTTTAAAGGAGACTTTCATATACAAAATACTTATTGAGACCCGACATACGCATTAACGTGCATAAGTCTCTATAGCAGAATGTCAAGTCATGGATTTACTGCACCCTAATGCATTGGTTATGTGGGTTTAGAGCCAAATTTGCGGTgtcatttttttgtacatttttccAAATTCCAGGTAACTTTGAGAATTTGGAAATGTGTTAGGAATCTATTATTATTTTGGAACATTTGAATAATATTTTTATATGTTTTTatttctaaaattacattggttTGGAAGGAAAGTTTTTAAATTTGCTGGAAATATTTCCATTCTTTGTTACGCCTAGGATGCATACTACCTTTACATAACTTAGACTTCCACATAATTATCGCATTGATCTCAATGGGAGGAAACGTCATGCATGGATCTCAATTTAGGAGTCTAGACACTCCAGCACAGTCTATTATAGAAGTACTAAAAGCCAAAAATGAAGTCTTAATTGTCTGCTATATTTCCAAGATGGTTCGACAAAGGTAATTAAACATTTCTTAGACATGAAGACCTACACTCAAATAAGGTTATTTTTGTACCTTACTCTAAATGACAATTTAGCCAGAGGTCATCTCAATATAAacataaatgtttgatttttatttaacctttatttaactaggcaagtcagttaagatatATACTTCAAGAATCatgtccataattattggcacccttgataaagatgagcaaaaaagactgtataaaatcaAAATATCAAATTCTGAGCTATATTGCATAAATCAATGGGGAAATtagattattttatactaatacaattgctcagagaaagagattttgtttaaaaagtaataaaaatacatctaaaaaagctagcagggcagcaggtagcctagcggtttagagtgttggaccaatAACTGAAAGGTCGTTGGTTTGAATCTCCATGCTGACTAGGTAAAAAAAGGTGTTGATCTGCCCTTGGGCAAGGCCCTTATAGCTCctataagtcactctggataaagtgtctactaaatgactaaaatatagaTAGGgttcaaaatgattggcacccctgttttcaaaaCTCTAGCACCCTCCCGTAATGAGTATAATGACACCCTTtttcccagtggtgtaaagtacttaagtaaaaaatacttgaagtactacttaagtcattttggggggtatctgtactttactatttatatttttttaatacttttacttttacttcactatattcctaa
>XM_036980495.1
GCctattgttccctctctctcatacgcTGGCTGTTTCACTGAGAGATCTCACTGCATTCCGCACACCTGTTAGCTGTAACCATCTGACCAAGCACCAGAAAAAGGAACGAGAGACGGGATATGGATCTTTACGCAATCATCAGTGCTGTTTTGCTTCTGCAACTGCAAGGTTTTCATGTGGCCTTGCTCCAGGCACCAACAGACTCTCCAGGACAAACGATTGATCAAAGTTGGCTTCGTCAATTGGTCAAATCCAAGCTAAACAAGACAACAtcacaagctcagtccaatgacaTTGTTGATATGACAATGGAGGGTACTGAGTCAACAGATGACTCTGAAGGGGTTATCGCAAATGGCTCTGTGTCATTTAGTGGGGAACAGGACAACGTCCAGGACACAAATGAGACTTCAGGTGGTGTGACAATTGGCACCACAATGCCACCAGGGTTGCCAAATGCTACAGCAGAGGAACCTCCAGAAACCACTGTTGCACCAGAACCCCCAGTGAGTGTTGCCTTAAACTCAAGCCAAGTTTCCAATGCAACCGGAGAGGACAGTGGATTCCAAAATGCCACCACTACTGCAATCACAGAAAACTCAAATGGCTCTAATTCCATGTCCAATTACACTGAATTAAATGAGACAACCACAGCTCCAGACACCAATAGCACAGAGCAGATTGGTCCAGATCATCCTGGTGCTGAGAACAGGGTAACCAACAGTACAGAGGACTTCCATAATGTAACGACTGCAGTACCAGAGCCATCCAGTGAACCATCCACAGCTTCCCCCTCCACAAAGCTTCCCTTGGACTCCCCTGGGACTACAACTGCCAAAATCACCCCAGAAACTACAACAACCACAGGTCCCAGCACAATAACAGCCATGATGAAAACTGGTGCCGCTTCAGGAAGCAACTCTGCGAGAGGCTTGGACTCAGATGCAGTGCAGAACAGGAAGAGGAGTGAGGCATGGGCTGCCATCCTGGGCATAGGAGTGGCAGTGTGCTTCGTGGCGATGGTGGTCTACGTCATCCTGAGAAGGAGAGACCGACGGGATTTCACACACAGGAAGCTTGTTGAGGAAATCCCCTCAGACCCAGTTCAACGACTGAACAACCCTGAGCCCGTGGACTTGAAATATGATGGTTCCGCCTACTACAATCGTGGACTCCAAATGGACAATATCCCAATGGACCACTTTCCACACGGACATCAAAATTGAGAAGGACTCCAAGACTAACCTTAAACACTTTAAAGGAGACTTTCATATACAAAATACTTATTGAGACCCGACATACGCATTAACGTGCATAAGTCTCTATAGCAGAATGTCAAGTCATGGATTTACTGCACCCTAATGCATTGGTTATGTGGGTTTAGAGCCAAATTTGCGGTgtcatttttttgtacatttttccAAATTCCAGGTAACTTTGAGAATTTGGAAATGTGTTAGGAATCTATTATTATTTTGGAACATTTGAATAATATTTTTATATGTTTTTatttctaaaattacattggttTGGAAGGAAAGTTTTTAAATTTGCTGGAAATATTTCCATTCTTTGTTACGCCTAGGATGCATACTACCTTTACATAACTTAGACTTCCACATAATTATCGCATTGATCTCAATGGGAGGAAACGTCATGCATGGATCTCAATTTAGGAGTCTAGACACTCCAGCACAGTCTATTATAGAAGTACTAAAAGCCAAAAATGAAGTCTTAATTGTCTGCTATATTTCCAAGATGGTTCGACAAAGGTAATTAAACATTTCTTAGACATGAAGACCTACACTCAAATAAGGTTATTTTTGTACCTTACTCTAAATGACAATTTAGCCAGAGGTCATCTCAATATAAacataaatgtttgatttttatttaacctttatttaactaggcaagtcagttaagatatATACTTCAAGAATCatgtccataattattggcacccttgataaagatgagcaaaaaagactgtataaaatcaAAATATCAAATTCTGAGCTATATTGCATAAATCAATGGGGAAATtagattattttatactaatacaattgctcagagaaagagattttgtttaaaaagtaataaaaatacatctaaaaaagctagcagggcagcaggtagcctagcggtttagagtgttggaccaatAACTGAAAGGTCGTTGGTTTGAATCTCCATGCTGACTAGGTAAAAAAAGGTGTTGATCTGCCCTTGGGCAAGGCCCTTATAGCTCctataagtcactctggataaagtgtctactaaatgactaaaatatagaTAGGgttcaaaatgattggcacccctgttttcaaaaCTCTAGCACCCTCCCGTAATGAGTATAATGACACCCTTtttcccagtggtgtaaagtacttaagtaaaaaatacttgaagtactacttaagtcattttggggggtatctgtactttactatttatatttttttaatacttttacttttacttcactatattcctaa

Function

NR:

description
mucin-15-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021606897.2 False 2522 mRNA 0.41 4 56553850 56562955
XM_036980495.1 True 2505 mRNA 0.41 4 56553862 56562955

Neighbor

gene id symbol gene type direction distance location
LOC110526181 madd coding upstream 107985 56362031 ~ 56445865 (+)
nr1h3 nr1h3 coding upstream 196220 56332705 ~ 56357630 (+)
LOC110525039 NA coding upstream 225847 56321703 ~ 56328003 (+)
LOC110526177 LOC106587086 coding upstream 319750 56185132 ~ 56234100 (+)
LOC110526175 LOC106587084 coding upstream 433103 56020625 ~ 56120747 (+)
ptpmt1 ptpmt1 coding downstream 383399 56946354 ~ 56951411 (+)
ndufs3 ndufs3 coding downstream 391179 56954134 ~ 56960155 (+)
LOC110526195 LOC106587104 coding downstream 525792 57088747 ~ 57196089 (+)
LOC110526197 LOC106587108 coding downstream 699113 57262068 ~ 57277274 (+)
LOC110526201 LOC106587113 coding downstream 944977 57507932 ~ 57550725 (+)
G524199 NA non-coding upstream 228680 56324937 ~ 56325170 (+)
G524139 NA non-coding upstream 271877 56278248 ~ 56281973 (+)
G524074 LOC102208280 non-coding upstream 411644 56140696 ~ 56142206 (+)
G524073 NA non-coding upstream 413372 56139929 ~ 56140478 (+)
G524303 NA non-coding downstream 21321 56584276 ~ 56589481 (+)
G524371 NA non-coding downstream 114154 56677109 ~ 56756337 (+)
G524519 NA non-coding downstream 325594 56888549 ~ 56889643 (+)
G524521 NA non-coding downstream 329431 56892386 ~ 56892635 (+)
G524469 NA non-coding downstream 330290 56893245 ~ 56895396 (+)
LOC110526169 LOC106587076 other upstream 637904 55904064 ~ 55916081 (+)
LOC110526167 LOC106587078 other upstream 987351 55563439 ~ 55568167 (+)
G523529 NA other upstream 1069243 55484249 ~ 55484607 (+)
LOC110526161 LOC106587065 other upstream 1612977 54793125 ~ 54954478 (+)
G525645 NA other downstream 1013129 57576084 ~ 57581070 (+)
G525861 LOC106587122 other downstream 1041153 57604108 ~ 57606367 (+)
fbxo3 fbxo3 other downstream 1058893 57621795 ~ 57635241 (+)
LOC110526214 LOC106587124 other downstream 1076519 57639437 ~ 57642487 (+)
G525912 NA other downstream 1140503 57703458 ~ 57710340 (+)

Expression


Co-expression Network