ptpmt1 (ptpmt1)


Basic Information

Item Value
gene id ptpmt1
gene name ptpmt1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 56946354 ~ 56951411 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021606939.2
TCAAACTCTCGGAAACAGGGGATTGGGGGTGTGACCGTCGGGGATGTTTTTTTAATTGGAGTGAATGTTGGACCAAACAACGTTAGCTAAATATTTCTTTAAAGCTTTTTCTAAATGTGCGTTATATTTAACCATTTTTCTTGAGTTTTCGGGGCGCCTTTAGACCCAATGTGCCATTTAGAATAACAAGTGTCCCCTCTGTCAAAACATGCTGGTGCAGACAGAAAATGTCAGGGGGGTAATAACCATGAACGAGGAATATGAAACAAAGTACTTCTGCAACTCAGCTGAGGAGTGGAAAGCCGAGGGGGTGGAGCAGCTGCGACTCAGCACAGTGGACCTGACCGGTGTGCCCAGTCTAGAGAACCTGCACAGAGGAGTGGAGTTTGCACTTAGTCACCGGGAAAAGGGCTCCAGTGTGTATGTCCACTGTAAGGCTGGACGCTGTCGCAGTGCTACACTAGCTGCTGCATACATCATAAGGATACACTGCTGGAGTCCAGAGGAAGCATGTCAGATGTTGGCCTCTGTCCGACCACATGTAATAATTCGTTCATCACAGCTGGAGATGCTTCGGCGGTACCATCAGCAAGTCTGTGGCGGAGGTTCCATTTAAGAGTGAGGCTGCCAGCATACTTATTGCACTTATACAGAAACTGTAAATTTAGCATTGTCAAGACGAACAATATGCTGCTTGAAGGGATTTTTGACCTTTAGCTCATTCTTTTACATAGTTTTGTTACTCAACTGGATCAAGTGTATATTGAATAATTCTCAAATGTTGTATAATTCAAGTGTCATCACAGCTCATCAGAACATGGGGTATAATAAATTGCTATCCCAATCAAAGTACTGACAGGTGGGTGAAGGGGGTGTATTTAAAAGCATGTTTctacagattttttttcttccttaATTAGGACATTTGATTACAATTTCTATGTTAAGAAAATTTGTGATATTTTCATTGGTACTAATTTCACTGATCGTTTGATAGTATTCTATATGGGTTGTAAAAACATATTGgaaaataattatattattataaaaGGATAGCTATTGAAACTTAATCCATTGAAACATAACCGGAGTGAACACGGGGCCTAATTGTCTGGAAAGCCCAGGTTGAAATGAGCATTTGAATCAGGAAAGGTTACTCTCACGACCTCTACAAACCATGTTGAATAAAGTGATATGTTAACGTACTTTA
>XM_021606938.2
aaggcaatTTATAGTACAATATTTACACGTGTATTGGGGACAACGGTacaataagagtctggtagcagcagttgtgatatGTGCTAACGTGCGGGGAATCagggcaggtggtcagtccagttcacgtgttcagcagtctgatggcttgtagatagataTAAACTCTCGAAACGATCCTATGGCAAATATATTAACGTATCTGGTTATTTTTCTTCAACCTAACAATTTACTCTGTGTAATAAGTCCTCCGGGCCACAAGGCGAAGTAGCCTGTTAGGTTGAATAGTACCTTTAGAACAACAAGTTTTCGTCCCATTCATTTAGATCTTGTTGGTTTGTGGTGGGCCATGCATGTATGTCGGATTTGGAATTTGCCTTAACATTAGAGGTGCTGACTACGCTGTGGTGTGATCATGTCTGGGGCGTTAGCAAGGGTACTGTTTTATCCCACATTAGCGTATAATGTTGTCATGGAAAAAGTATCCTCAAGACGGTGGTTCAATCGCGTGGATCAGACTGTCATTCTAGGAGCCCTGCCTTTCAAATCAATGACTAAtgagCTGGTGCAGACAGAAAATGTCAGGGGGGTAATAACCATGAACGAGGAATATGAAACAAAGTACTTCTGCAACTCAGCTGAGGAGTGGAAAGCCGAGGGGGTGGAGCAGCTGCGACTCAGCACAGTGGACCTGACCGGTGTGCCCAGTCTAGAGAACCTGCACAGAGGAGTGGAGTTTGCACTTAGTCACCGGGAAAAGGGCTCCAGTGTGTATGTCCACTGTAAGGCTGGACGCTGTCGCAGTGCTACACTAGCTGCTGCATACATCATAAGGATACACTGCTGGAGTCCAGAGGAAGCATGTCAGATGTTGGCCTCTGTCCGACCACATGTAATAATTCGTTCATCACAGCTGGAGATGCTTCGGCGGTACCATCAGCAAGTCTGTGGCGGAGGTTCCATTTAAGAGTGAGGCTGCCAGCATACTTATTGCACTTATACAGAAACTGTAAATTTAGCATTGTCAAGACGAACAATATGCTGCTTGAAGGGATTTTTGACCTTTAGCTCATTCTTTTACATAGTTTTGTTACTCAACTGGATCAAGTGTATATTGAATAATTCTCAAATGTTGTATAATTCAAGTGTCATCACAGCTCATCAGAACATGGGGTATAATAAATTGCTATCCCAATCAAAGTACTGACAGGTGGGTGAAGGGGGTGTATTTAAAAGCATGTTTctacagattttttttcttccttaATTAGGACATTTGATTACAATTTCTATGTTAAGAAAATTTGTGATATTTTCATTGGTACTAATTTCACTGATCGTTTGATAGTATTCTATATGGGTTGTAAAAACATATTGgaaaataattatattattataaaaGGATAGCTATTGAAACTTAATCCATTGAAACATAACCGGAGTGAACACGGGGCCTAATTGTCTGGAAAGCCCAGGTTGAAATGAGCATTTGAATCAGGAAAGGTTACTCTCACGACCTCTACAAACCATGTTGAATAAAGTGATATGTTAACGTACTTTA

Function

symbol description
ptpmt1 Predicted to enable phosphatidylglycerophosphatase activity and phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity. Predicted to act upstream of or within protein dephosphorylation. Predicted to be located in cytoplasm. Orthologous to human PTPMT1 (protein tyrosine phosphatase mitochondrial 1).

NR:

description
phosphatidylglycerophosphatase and protein-tyrosine phosphatase 1 isoform X1

GO:

id name namespace
GO:0035335 peptidyl-tyrosine dephosphorylation biological_process
GO:0008138 protein tyrosine/serine/threonine phosphatase activity molecular_function
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG:

id description
K14165 K14165; atypical dual specificity phosphatase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021606939.2 False 1210 mRNA 0.41 4 56946354 56951411
XM_021606938.2 True 1558 mRNA 0.42 4 56947556 56951411

Neighbor

gene id symbol gene type direction distance location
LOC110526184 LOC106587093 coding upstream 383399 56553850 ~ 56562955 (+)
LOC110526181 madd coding upstream 500489 56362031 ~ 56445865 (+)
nr1h3 nr1h3 coding upstream 588724 56332705 ~ 56357630 (+)
LOC110525039 NA coding upstream 618351 56321703 ~ 56328003 (+)
LOC110526177 LOC106587086 coding upstream 712254 56185132 ~ 56234100 (+)
ndufs3 ndufs3 coding downstream 2723 56954134 ~ 56960155 (+)
LOC110526195 LOC106587104 coding downstream 137336 57088747 ~ 57196089 (+)
LOC110526197 LOC106587108 coding downstream 310657 57262068 ~ 57277274 (+)
LOC110526201 LOC106587113 coding downstream 556521 57507932 ~ 57550725 (+)
atg13 LOC106587118 coding downstream 607114 57558525 ~ 57568473 (+)
G524472 NA non-coding upstream 39960 56906153 ~ 56906394 (+)
G524470 NA non-coding upstream 46100 56899979 ~ 56900254 (+)
G524473 NA non-coding upstream 46934 56899176 ~ 56899420 (+)
G524469 NA non-coding upstream 50958 56893245 ~ 56895396 (+)
G524521 NA non-coding upstream 53719 56892386 ~ 56892635 (+)
G524555 c1qtnf4 non-coding downstream 9352 56960763 ~ 56972189 (+)
G524577 LOC106587102 non-coding downstream 39132 56990543 ~ 56993453 (+)
G525590 NA non-coding downstream 158109 57109520 ~ 57109750 (+)
G525595 NA non-coding downstream 162563 57113974 ~ 57114230 (+)
G525598 NA non-coding downstream 173172 57124583 ~ 57124805 (+)
LOC110526175 LOC106587084 other upstream 825620 56020625 ~ 56120747 (+)
LOC110526169 LOC106587076 other upstream 1030408 55904064 ~ 55916081 (+)
LOC110526167 LOC106587078 other upstream 1379855 55563439 ~ 55568167 (+)
G523529 NA other upstream 1461747 55484249 ~ 55484607 (+)
LOC110526161 LOC106587065 other upstream 2005481 54793125 ~ 54954478 (+)
G525645 NA other downstream 624673 57576084 ~ 57581070 (+)
G525861 LOC106587122 other downstream 652697 57604108 ~ 57606367 (+)
fbxo3 fbxo3 other downstream 670437 57621795 ~ 57635241 (+)
LOC110526214 LOC106587124 other downstream 688063 57639437 ~ 57642487 (+)
G525912 NA other downstream 752047 57703458 ~ 57710340 (+)

Expression


Co-expression Network