LOC110526197 (LOC106587108)


Basic Information

Item Value
gene id LOC110526197
gene name LOC106587108
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 57262068 ~ 57277274 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021606949.2
TGAGGGCACATCTGCCGGAGTCCGAACTGCCTCTTTCGAGAGAGACTTGCACACCTCAGCTCGGGGCGTTTCGGTCACCAGTCACTTGGAATTGTACTCTCCTTATCAAGGCTCTCTCTGGTACCTGCCGAAAGACATTCTGACATGAAAATGCATGATGTTATCCAATATGTGCCAATTATTATGATATCGCACAACATTGGAACATCGTCATCTCTATCCTTCAGGAAAAACGTCTTACAGTAAGATTGAGAGAGGGATTTTTGCCTGGTTGAGTACCATCTAAACATGCAACATGAATCCCACTAACAGCACTGGAGCTGGTGGGCTTGCGCCCTGGAACTTAAACAGCTCCTTGAGCAACATTTCAAGTGATGTCTTCTCAGCCAACCTCAGCTGTAATGATTCTGGCCCCAATGAGACCTGTGTGgcgggggaggaggtggtgggaaGCCCCTATAAAGCCGTGGAGATGGTCTTCATCGCCCTGGTTACAGGCTCCCTTAGCTTTGTCACTGTCACAGGCAACATCCTGGTGATGCTCTCCATTAAAGTCAATCGGCACCTCCAGACTGTCAACAACTACTTTCTGTTTAGCCTGGCGTGTGCAGACCTTATCATTGGTGCGTTCTCCATGAACCTCTACACTGTCTACATCATTGTGGGCTATTGGCCCCTGGGACCTGTAGCGTGTGACTTGTGGCTGGCCCTGGATTACGTGGTGAGCAATGCTTCTGTCATGAACCTTCTTATTATTAGCTTTGACCGCTACTTCTGTGTCACCAAGCCCCTGAGTTATCCAGCCAGAAGGACCACCAAAATGGCTGGGCTGATGATTGCAGGTGCCTGGGTTCTCTCCTTCATTCTTTGGGCCCCTGCCATCCTGTTTTGGCAGTTTATTGTTGGAGAGCGCACGGTTCCACCAGGAGAGTGCTACATCCAGTTTCTCTCCAACCCTGCCGTCACCTTCGGCACAGCCATCGCTGCCTTCTACCTGCCTGTGGTCATCATGATGGTGCTCTACATCCACATCTCTCTGGCCAGCCGCAGCCGGGTGTCCAAGCAGAAGCCTGAGGCTGAGAAAAAGAAGAAGGGCCTCAAGATACCTAACCCACTCAAGAGCCACATCCTTaacagacagaataacaacaaccaGTCCCCCAAGCCCAGTCTGGAGTCCTGCAACACTGGTGAAGCTGTGAAGAATGGCAAGATTGATGAGTCTGTTGTTTCCACCAAGGCTGACGCTAGTGTCAAtcgagaagagaaagagagttccaatGACTCCAGCACAGCCAGCATTGCCCCAAAAAACGCCAAGGAGAGGGCCAACAGTGAAGCCACTGTCGGGGCGGGGGTTGGTGTTGCTCCTGCACCAGGTCCTGCTCCTGCACCTGAAACTGCACCTGCACCTGCACCTGCAGCGGCAACCGTCAAACTCAACCCTACCTCTAAATGGTCCAAGATCAAGATTGTAACCAAGCAGGCTGGTGACGAGTGCATTACCGCCATCGAGATTCAGCCACCCATCCAGGGGAGCGAGGGCCGCTCTATCCCAGTCAACCGTCCCCGGAAGGTGGCGCGCAAGTTTGCCAGTATTGCCCGCAGCCAGGTGAAGAGGAAGCGCCAGATGGCAGCCAGGGAAAAGAAGGTGACCAAAACCATCTTCGCCATCCTGCTTGCCTTCATCCTCACATGGACCCCGTACAATGTCATGGTGCTCATCAGCACCTTCTGCCACTCCTGTGTCCCAGACACTGTGTGGGCCATCGGCTACTGGCTGTGCTACGTCAACAGCACCATCAACCCAGCCTGCTACGCCCTCTGCAATGCCACCTTCAAGAAGACCTTCAAGAACCTCCTCATGTGCCAGTATAAGAATATTGGAACAAGATGAGCTGGagcatacatacagtagtaggGCTGGTGAGGGGTAATATTACTGAGACATCTGGAGTGGTACagtaggaggggaggagggagcctCCACAGGGAGCCTCCTCCTCAGTCATGCTTATGAAATGATGTCACACTCAATGCTCCTCTGAGATGTCTTAGCCACAGAAGATAGTAACATCATATCTATGTCAAAATGATAAAGTATAAATATGAAGTCCAATGTGAGGATCGTTCAAATGAAGAATCTGAGATCAGCTAAAGTTATGGACCCTTGATGTGAAGACCAACAAGGACTAATTCGTATCCACTGAAATGTGGTTACAATCTTCAAGAAGCCCAGCTGAATATCAGTAGTCTAAGGCCAGGCCAACACCTCTCCAAGATACCACCACCTAACCAGAGACACTGAGGGCAGTGTTACATCATGTCTGGGTGTACGGCAAAAGACACATTTAAAAAGGAGCTTGGAAATCTTCCTTTATACAACAGTATAAAATGAAACAAGCATGAGATGTCTAATTCAACTATccatttcctcctctccctcctccttattATCGAGAGCGTTATTAACTCCTCGCGGAAATGGAGGCACTCCCTCACGTCAGTGAATCATTATCATAATGTGATATGTGGTCATAACATGGAGAGAAAAAGACGATACGGATTCTTTGTTGTCGCAGACTGTCTAACCTCAAGGCTAGTTGCACGTACGCCCAAGTACTGCAAAAATACTGCTGGTGACTTGAAATAAGTTGTTACCCCTGAAAGTACAGTATGTATGCATTTCCATTCACCTAACGCTGACCGAAATATTGATGTATCTGTATTTGCTCAAAGATGATCTTCAAAGGTGACAAACTGTTGATGGCAGTACAAGGCCATGGCATAAATTAACAGCCAGTGTTTGGCTCCAAACAATTAATGTATCTTGTTGTTACGTTATAAGGAGAAACACCCACAGGCAACGGTAAAGATTTAATTCTTTGCCAGATTCACAATTATGaaagtgtttttaaaaatgtatttagccTTCACTGCGAATGGAACTACCGGTACAAAAAACAAACACTTGTTTATAGGGGATACTTATCTCGAGAGTATTAAACATATTTTCTATGTTATCTCCTGCCTAATTAAGAATGTGTAAATAGAAGGCCATTGTATGCTCTAAAAAGTGCAGTTTCTCTCATGCTTTTCATATCTGAATGTTTGTACCTCTCTTGTATTATGTTTGTGGTTTACACCTAATTTTACAAAttgaatataaaaaatatatatatatatatatatatatatatatatataactgtatGTATATGCAAGAGATATTAAGAGAGTGTATTTCTAAATTGATGTAAAGTCAGGAATTATGGGAAAACATTTAAAgcagttgtttttgttttgaatGCCATTGGTGACTAAGTCCCTTATATTTGTAACTTTGTCACTATTCTCCATGTTGGATTACAACGTGTGAAGTCCAGCTTGTACCTCCCCAGCCTATAATCACTTTCATGAGGTCACACCAATGATTATGTGGGTAACAGCTTATCGAACTGGTTCAATGCATTTTCAAAGAAGGACCTTCTGACAAAGCACCTAGATGCATCAAAGTAGGGAGTAGTAGGGAAAATAACAGATATTGTTTGGGCGTGACCTTGTAATGTAAAATGACCAGCTACGGGGGTGCATCCATATAAAACTGATTTTGAAATGATCATGGAGTGATTACTGTGGTGGTAAAGCTTGATGAATAAACCGTCTTTAATGAATGAATATAACATTGGCATGAAAGGCTGGGTGCGACCCCAAGAAAGGGGTGTGCGGGAGAGTGTAAAACATGACCACAGTTTCCTGTAATATGGGCCTCCCATAAAACAACCATCCAGAGACAGTGTACAGAGGATTGTATCTTTTTCTAATGCTTAATAAAGATTGTGTACCATTGGAA

Function

NR:

description
muscarinic acetylcholine receptor M4-like

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0040012 regulation of locomotion biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0016907 G protein-coupled acetylcholine receptor activity molecular_function

KEGG:

id description
K04132 CHRM4; muscarinic acetylcholine receptor M4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021606949.2 True 3853 mRNA 0.45 2 57262068 57277274

Neighbor

gene id symbol gene type direction distance location
LOC110526195 LOC106587104 coding upstream 65979 57088747 ~ 57196089 (+)
ndufs3 ndufs3 coding upstream 301913 56954134 ~ 56960155 (+)
ptpmt1 ptpmt1 coding upstream 310657 56946354 ~ 56951411 (+)
LOC110526184 LOC106587093 coding upstream 699113 56553850 ~ 56562955 (+)
LOC110526181 madd coding upstream 816203 56362031 ~ 56445865 (+)
LOC110526201 LOC106587113 coding downstream 230658 57507932 ~ 57550725 (+)
atg13 LOC106587118 coding downstream 281251 57558525 ~ 57568473 (+)
LOC110526205 LOC106587121 coding downstream 310319 57587593 ~ 57591339 (+)
fbxo3 fbxo3 coding downstream 344521 57621795 ~ 57635241 (+)
LOC110526214 LOC106587124 coding downstream 362163 57639437 ~ 57642487 (+)
G525671 NA non-coding upstream 21185 57240665 ~ 57240883 (+)
G525667 NA non-coding upstream 24997 57236848 ~ 57237071 (+)
G525663 NA non-coding upstream 28762 57233094 ~ 57233306 (+)
G525583 NA non-coding upstream 60242 57201656 ~ 57201826 (+)
G525581 NA non-coding upstream 61121 57199932 ~ 57200947 (+)
G525698 NA non-coding downstream 321 57277595 ~ 57278035 (+)
G525643 LOC106587109 non-coding downstream 3333 57280607 ~ 57293416 (+)
G525799 NA non-coding downstream 152329 57429603 ~ 57432552 (+)
G525654 znf408 non-coding downstream 304538 57581812 ~ 57584090 (+)
G525656 NA non-coding downstream 308244 57585518 ~ 57587316 (+)
LOC110526175 LOC106587084 other upstream 1141334 56020625 ~ 56120747 (+)
LOC110526169 LOC106587076 other upstream 1346122 55904064 ~ 55916081 (+)
LOC110526167 LOC106587078 other upstream 1695569 55563439 ~ 55568167 (+)
G523529 NA other upstream 1777461 55484249 ~ 55484607 (+)
LOC110526161 LOC106587065 other upstream 2321195 54793125 ~ 54954478 (+)
G525645 NA other downstream 298810 57576084 ~ 57581070 (+)
G525861 LOC106587122 other downstream 326834 57604108 ~ 57606367 (+)
G525912 NA other downstream 426184 57703458 ~ 57710340 (+)

Expression


Co-expression Network