LOC110526205 (LOC106587121)


Basic Information

Item Value
gene id LOC110526205
gene name LOC106587121
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 57587593 ~ 57591339 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036981766.1
TGGGACAATTCGGAGTACAACGTATTTCTCACCCCTGGATTGAGTGAAATAAAAGACGTTGAGGCCTTTGAGAGTGAAGGAGCCAGCCAGAGATTGAAAGTCGACCACTTGCTTTTCACCATTGAGAGACATCAGAAATGTTACTTCTGGTTTTGTGAAGAGTGCAAAGAATATTTTATTGATGAATGCCCCACACATGGCCCTCCAGTTTTTGTGCCTGACACCCCTGTGCCAGTGGGCGTCCCAAACCGTGCCGCCCTTACTACCCCTAATGGCATTGAGGTCATTCAGGAAGGCAGCGAGGTGGACGTCTGCTGCGTAGACAAAGACATTCCCAGGGGGGCACTATTCGGTCCTTACCAGGGTGAAGTGATGTCACAGGACAAGTCCTCTGGTTTCTTCTCCGGGATGTTGGTGGACAAAAACAACTCATACAAATCCATTGATGTTAGCGACGACACCAAAGCCAACTGGATGAGGTATGTCCGAAATTCTTCAGAGGACATTGAGCGAAACCTGACAGCCTTCCAGCATGGGGAGCACATCTACTTCCAGGTGTGCCGTGACCTGTCAGTGGGAGAGAGGCTGCGGGTATGGTACAGTGATGACTACATGGACCGATTACACCGCATGTCCCAGGACACCATCGGCAGCAACTTGGCCACAGTTGAAACGGACTCACGAGTGTGGTCAAGCCCCTGGAATGTTACAGCCCGGGACCGGGAGGCCACCCAGACCCTCATCGAGCACTACGGGTCCCCAGAAATCCAGAGCCTACTGAACGACCGGACAACCAGAACCAAGCAGATCTTTGAGATCATTGCCAGTCGGATGGAGGCACAGGGCTTCCTGATCAGTGAGAACTCCTGGCAGGCTGGCAAGCGATGCTTCCAAAAGTGGCGCAACATGGAGCGCACGTACAAAGACTATGTGCTGGCGTCCAAGAGGACTGACGCTGGACGCAGGAAACAGCCTGAGTTCTATGAccagttccatgcactcatgggcCAGAGGCTGAGCTCCAAGCTGGCTGCTGCTGACACCCCAGCCAGGGTGTTGGCCAAGCTGAAGCCTAAAGCTGTAGCACCAACTCCAAGCCTGCCCCTCTACGCTATTGTAGTCCCATCAGGCCATCCAGTTAACCTCGGTATACCCTCCACCTGCAGCCCAGAGGCAGAGATTGGAGTCCATGCAGGCACCACTGAGCCTGAACCGCTagccaggaagtccaggagcgAACGGGTCCCACATCCCAAGATACTCCAGTCAAATacagtggaggagaggacagagaatcAACTCcaaaaggggaggaggaggtcaTGGCTTGGGGATGACAGAGCTCCTGAGAACGGTGGGTCCCTGCCTGTGTGGTCGGAGCGGAAAATGATCAGTCAGGACATTGAGGCAACGGAGGCTTTAGTAGAGCTGTACAGCTCTCCAGAGATCCAGGGACTAATCAGGGAGAACAAGACCCGAACCAAGAGGATCTTTGAGATCATAGCTAGCAGGCTAAAGGAGCAAGGCTTCCCCATCAGTGATGTGCCTGAGCAGGCTGGGGAGCGATGCTTCCAGAAATGGCGGAACCTATCGAGGGCATACAAGGAGTACATCCTCCACCCAGAGAAGGCTGACATGGCAAAGCGGAAGCTTCCGGCCTACTTCAACAGGCTCCAGGACCTCATAGGCCACCGGCTCAGCCTTCAACTATCTGAAGACTCCCCCGAGCCTGATGGCAGCATGGGAGATGCTGAGGCACATGCAGGGGTTGAGGACATAAGCCAGAATCTGTTACACATTGTGGAGGTGCCGGCGAGCCCCACTGACATTGTCAGTCCCCCCTCCACTTctgcctccttctcctcttcacaTACAGGAAACCCCCTCCATGTTGGAGCCAGTGGgcggaagaggaggatggcaaaCATATTGGATGTCTTTCAAGGTTACAGGGAGGAGGACAAACGATTgcaagaggagagggaaaggagggcagaggagcGCTTTAATCAGCTGCGAAGCCTTCTGCAGCAACAGCACACAGAGACTATGGCAGTGATGAGAGAACTGATCAATTCCATGAAGATGAAAAAACAATGAGATATACTgtgaatacagttgaagtccgaagtttacatacaccttagccaaatacatttaaactccgtttttcacaattcctgacatttaatcctagtaaaaattccctggcttaggtcagttaggattttaag

Function

NR:

description
uncharacterized protein LOC110526205 isoform X2

GO: NA

KEGG:

id description
K24644 PRDM11; PR domain zinc finger protein 11

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036981766.1 True 2234 mRNA 0.53 6 57587593 57591339

Neighbor

gene id symbol gene type direction distance location
atg13 LOC106587118 coding upstream 19120 57558525 ~ 57568473 (+)
LOC110526201 LOC106587113 coding upstream 36868 57507932 ~ 57550725 (+)
LOC110526197 LOC106587108 coding upstream 310319 57262068 ~ 57277274 (+)
LOC110526195 LOC106587104 coding upstream 391504 57088747 ~ 57196089 (+)
ndufs3 ndufs3 coding upstream 627438 56954134 ~ 56960155 (+)
fbxo3 fbxo3 coding downstream 30456 57621795 ~ 57635241 (+)
LOC110526214 LOC106587124 coding downstream 48098 57639437 ~ 57642487 (+)
aplnr2 LOC106586995 coding downstream 53328 57644667 ~ 57647053 (+)
psmc3 psmc3 coding downstream 58593 57649932 ~ 57659929 (+)
LOC110526217 hce2 coding downstream 121822 57713161 ~ 57716278 (+)
G525656 NA non-coding upstream 277 57585518 ~ 57587316 (+)
G525654 znf408 non-coding upstream 3503 57581812 ~ 57584090 (+)
G525799 NA non-coding upstream 155041 57429603 ~ 57432552 (+)
G525643 LOC106587109 non-coding upstream 294177 57280607 ~ 57293416 (+)
G525698 NA non-coding upstream 309558 57277595 ~ 57278035 (+)
G525647 NA non-coding downstream 1315 57592654 ~ 57594166 (+)
G525655 NA non-coding downstream 3062 57594401 ~ 57594669 (+)
G525897 NA non-coding downstream 90649 57681988 ~ 57682196 (+)
G525903 NA non-coding downstream 103293 57694632 ~ 57694840 (+)
G525905 NA non-coding downstream 103929 57695268 ~ 57695488 (+)
G525645 NA other upstream 6523 57576084 ~ 57581070 (+)
LOC110526175 LOC106587084 other upstream 1466859 56020625 ~ 56120747 (+)
LOC110526169 LOC106587076 other upstream 1671647 55904064 ~ 55916081 (+)
LOC110526167 LOC106587078 other upstream 2021094 55563439 ~ 55568167 (+)
G523529 NA other upstream 2102986 55484249 ~ 55484607 (+)
G525861 LOC106587122 other downstream 12769 57604108 ~ 57606367 (+)
G525912 NA other downstream 112119 57703458 ~ 57710340 (+)
G525972 NA other downstream 226485 57817824 ~ 57818280 (+)

Expression


Co-expression Network