psmc3 (psmc3)


Basic Information

Item Value
gene id psmc3
gene name psmc3
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 57649932 ~ 57659929 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021606998.2
gtacagtaggtggcggtaatacAACTCCTCGGTTGTAGTCTGCCGATTAACCTcaaagaagaagtagaagaactACCAACACGAAGACAAGAGGAAAGATGGCGTCGCTGAATGACAGATCAGTTTGGGATGAGGTGGAGGATGGGATCGGCGAAGAAGTCCTCAAAATGTCCACCGAAGAGATCGTTCAGCGGACACGTCTTCTGGACAGTGAAATAAAGATCATGAAGAGTGAGGTATTGAGGGTAACCCATGAGCTGCAGGCCATGAAGGACAAAATCAAAGAAAACACAGAGAAGATCAAAGTGAACAAGACCCTGCCGTACCTGGTCTCCAATGTCATCGAGCTTCTGGATGTGGACCCAAATGACCAGGAGGAGGATGGAGCAAACATTGATCTAGATTCCCAGAGGAAGGGCAAATGCGCTGTCATCAAAACATCTACAAGACAGACATACTTCCTCCCGGTCATTGGCTTGGTGGATGCAGAGAAGCTGAAGCCGGGAGACCTCGTGGGGGTAAACAAGGACTCATACTTGATCCTGGAAACCCTGCCCACGGAGTATGACTCCAGAGTCAAAGCCATGGAGGTGGACGAGCGCCCCACTGAACAGTACAGTGACATTGGTGGATTAGACAAACAGATCCAGGAGCTGGTGGAAGCAATTGTTCTGCCCATGAACCACAAGGAGAAGTTTGAGAACCTGGGTATTCAGCCACCTAAGGGGGTTTTGATGTATGGCCCCCCAGGCACAGGGAAAACCCTACTGGCTAGGGCCTGTGCTGCCCAGACCAAGGCCACATTTCTCAAGCTGGCTGGCCCACAGCTGGTCCAGATGTTCATTGGTGATGGTGCCAAGCTTGTCCGAGACGCCTTTGCCCTGGCCAAGGAGAAGGCCCCCTCCATCATCTTCATAGATGAGCTAGACGCCATTGGAACCAAACGGTTTGACAGTGAGAAAGCAGGTGACAGGGAGGTTCAGAGAACTATGCTTGAGCTCCTCAACCAGCTGGATGGGTTCCAGCCCAACATGCAAGTTAAGGTTATCGCTGCCACGAACAGGGTGGATATCCTAGATCCCGCACTGCTGCGTTCTGGACGTCTGGACCGTAAGATTGAGTTCCCAATGCCTAATGAGGAAGCACGAGCCCGCATCATGCAGATTCACTCACGCAAGATGAACGTCAGCCCTGATGTCAACTACGAGGAGCTGGCCAGGTGCACTGATGATTTCAATGGCGCCCAGTGCAAAGCAGTGTGTGTGGAGGCGGGTATGATCGCCCTTCGCAGGGGGGCAACTGAGCTCAATCATGAGGACTACATGGAAGGCATCTTAGAAGTACAGGCCAAGAAAAAGGCCAACCTGCAGTACTACGCCTAAGGCCCTGGAGCTTCAGGGGAAGGGTGCATGTGATACTCTCCAGATGTGTCCAAAACATGAACCAATCTCTGTACTGTTAGTGTGCAACATTGTCACTTCTCTCTCGTGTGAGACCTGTTTTGGCTTGTTTATGGTCCATGAAAGAATAAAGGCTTTACATTTGCCCTTTGGCTGGATGGAAAAGA
>XM_021606999.2
ggcggtaatacAACTCCTCGGTTGTAGTCTGCCGATTAACCTcaaagaagaagtagaagaactACCAACACGAAGACAAGAGGAAAGATGGCGTCGCTGAATGACAGATCAGTTTGGGATGAGGATGGGATCGGCGAAGAAGTCCTCAAAATGTCCACCGAAGAGATCGTTCAGCGGACACGTCTTCTGGACAGTGAAATAAAGATCATGAAGAGTGAGGTATTGAGGGTAACCCATGAGCTGCAGGCCATGAAGGACAAAATCAAAGAAAACACAGAGAAGATCAAAGTGAACAAGACCCTGCCGTACCTGGTCTCCAATGTCATCGAGCTTCTGGATGTGGACCCAAATGACCAGGAGGAGGATGGAGCAAACATTGATCTAGATTCCCAGAGGAAGGGCAAATGCGCTGTCATCAAAACATCTACAAGACAGACATACTTCCTCCCGGTCATTGGCTTGGTGGATGCAGAGAAGCTGAAGCCGGGAGACCTCGTGGGGGTAAACAAGGACTCATACTTGATCCTGGAAACCCTGCCCACGGAGTATGACTCCAGAGTCAAAGCCATGGAGGTGGACGAGCGCCCCACTGAACAGTACAGTGACATTGGTGGATTAGACAAACAGATCCAGGAGCTGGTGGAAGCAATTGTTCTGCCCATGAACCACAAGGAGAAGTTTGAGAACCTGGGTATTCAGCCACCTAAGGGGGTTTTGATGTATGGCCCCCCAGGCACAGGGAAAACCCTACTGGCTAGGGCCTGTGCTGCCCAGACCAAGGCCACATTTCTCAAGCTGGCTGGCCCACAGCTGGTCCAGATGTTCATTGGTGATGGTGCCAAGCTTGTCCGAGACGCCTTTGCCCTGGCCAAGGAGAAGGCCCCCTCCATCATCTTCATAGATGAGCTAGACGCCATTGGAACCAAACGGTTTGACAGTGAGAAAGCAGGTGACAGGGAGGTTCAGAGAACTATGCTTGAGCTCCTCAACCAGCTGGATGGGTTCCAGCCCAACATGCAAGTTAAGGTTATCGCTGCCACGAACAGGGTGGATATCCTAGATCCCGCACTGCTGCGTTCTGGACGTCTGGACCGTAAGATTGAGTTCCCAATGCCTAATGAGGAAGCACGAGCCCGCATCATGCAGATTCACTCACGCAAGATGAACGTCAGCCCTGATGTCAACTACGAGGAGCTGGCCAGGTGCACTGATGATTTCAATGGCGCCCAGTGCAAAGCAGTGTGTGTGGAGGCGGGTATGATCGCCCTTCGCAGGGGGGCAACTGAGCTCAATCATGAGGACTACATGGAAGGCATCTTAGAAGTACAGGCCAAGAAAAAGGCCAACCTGCAGTACTACGCCTAAGGCCCTGGAGCTTCAGGGGAAGGGTGCATGTGATACTCTCCAGATGTGTCCAAAACATGAACCAATCTCTGTACTGTTAGTGTGCAACATTGTCACTTCTCTCTCGTGTGAGACCTGTTTTGGCTTGTTTATGGTCCATGAAAGAATAAAGGCTTTACATTTGCCCTTTGGCTGGATGGAAAAGA

Function

symbol description
psmc3 Predicted to enable ATP binding activity; hydrolase activity; and proteasome-activating activity. Involved in lens development in camera-type eye and semicircular canal fusion. Predicted to be located in cytoplasm and nucleus. Predicted to be part of proteasome regulatory particle, base subcomplex. Is expressed in inner ear. Used to study cataract and sensorineural hearing loss. Orthologous to human PSMC3 (proteasome 26S subunit, ATPase 3).

NR:

description
PREDICTED: 26S protease regulatory subunit 6A isoform X2

GO:

id name namespace
GO:0030163 protein catabolic process biological_process
GO:0006508 proteolysis biological_process
GO:0000502 proteasome complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0017111 nucleoside-triphosphatase activity molecular_function
GO:0008233 peptidase activity molecular_function

KEGG:

id description
K03065 PSMC3, RPT5; 26S proteasome regulatory subunit T5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021606998.2 False 1567 mRNA 0.51 12 57649932 57659929
XM_021606999.2 True 1550 mRNA 0.51 12 57649943 57659929

Neighbor

gene id symbol gene type direction distance location
aplnr2 LOC106586995 coding upstream 2879 57644667 ~ 57647053 (+)
LOC110526214 LOC106587124 coding upstream 7445 57639437 ~ 57642487 (+)
fbxo3 fbxo3 coding upstream 14691 57621795 ~ 57635241 (+)
LOC110526205 LOC106587121 coding upstream 58593 57587593 ~ 57591339 (+)
atg13 LOC106587118 coding upstream 81459 57558525 ~ 57568473 (+)
LOC110526217 hce2 coding downstream 53232 57713161 ~ 57716278 (+)
LOC110526219 LOC106587128 coding downstream 69515 57729444 ~ 57734935 (+)
LOC110526218 LOC106587128 coding downstream 84203 57744132 ~ 57760940 (+)
LOC110526223 LOC106561972 coding downstream 183065 57842994 ~ 57863756 (+)
fgf3 LOC106587135 coding downstream 256416 57916345 ~ 57921070 (+)
G525655 NA non-coding upstream 55263 57594401 ~ 57594669 (+)
G525647 NA non-coding upstream 55766 57592654 ~ 57594166 (+)
G525656 NA non-coding upstream 62616 57585518 ~ 57587316 (+)
G525654 znf408 non-coding upstream 65842 57581812 ~ 57584090 (+)
G525799 NA non-coding upstream 217380 57429603 ~ 57432552 (+)
G525897 NA non-coding downstream 22059 57681988 ~ 57682196 (+)
G525903 NA non-coding downstream 34703 57694632 ~ 57694840 (+)
G525905 NA non-coding downstream 35339 57695268 ~ 57695488 (+)
G525908 NA non-coding downstream 38521 57698450 ~ 57698764 (+)
G525969 NA non-coding downstream 150811 57810740 ~ 57810945 (+)
G525861 LOC106587122 other upstream 43565 57604108 ~ 57606367 (+)
G525645 NA other upstream 68862 57576084 ~ 57581070 (+)
LOC110526175 LOC106587084 other upstream 1529198 56020625 ~ 56120747 (+)
G525912 NA other downstream 43529 57703458 ~ 57710340 (+)
G525972 NA other downstream 157895 57817824 ~ 57818280 (+)
G526547 NA other downstream 450977 58110906 ~ 58112819 (+)
G526628 LOC106587143 other downstream 612150 58272079 ~ 58272836 (+)
LOC110526933 LOC106562045 other downstream 658991 58318920 ~ 58408967 (+)

Expression


Co-expression Network