LOC110526219 (LOC106587128)


Basic Information

Item Value
gene id LOC110526219
gene name LOC106587128
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 57729444 ~ 57734935 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021607003.2
ATACCTTCTCGAAGCTCTAAGttctttTGCTGCTATGTTTGTGTTGAAGTTCACTGTGGGTCTCCTGACCCTGATGCTGGTGTCCTCTGCCTGGGTTGAGGAACTGACTGAGTTTGaagAGAATGTTGTGGAAGAAGACACCTCTGCTGAGCTCTCTGTTGGTGAGCTGCTGACCAGAGCCAACAGGGACCTCACCCCCGAAGCCGATGAGCCTACTCTGATGGGAGACATTGCCATGCCCTCGGAGAAGAACGCCGACCCCTGCACCGCCACCGGGTGTCTGTGGCAAAAGTACAGTGACGGAAACATCTGGGTGCCCTACGTCATTGCCAACCACTTCTCATCTCGCGAAGTAGCCATCATCCTGCGGGGTCTGGACTCCTTCGCCGAAACCACCTGCATCCGCTTCTTCCAGCGCCAGAATGAGAGGGACTACCTCAGCATTGAGTCTCGCAGCGGGTGCTACTCTTATGTTGGCCGTCAGGGTAATGCCCAGACTGTGTCTTTGGCCCGTCAGGGCTGCCTGTACCACAGCACCGTCCAGCATGAGCTCCTTCATGCCCTGGGCTTTAACCACGAGCAGACCCGCAGCGACCGTGACAACCACATCCATGTCTACTGGGAGAACATAATTGATGACATGAAGTACAACTTCGACAAGATCGCCACCCTGAACCAAGGAACTCCCTATGACTACAACTCTGTCATGCAGTACGAGAGGTACGCCTTCTCCAAGAACAACCGCCCCACCATGGAGCCCATCCCCAACAACAACGTGTCTTTCGGCGAGGCCACTCAGATGAGCAAGAACGACATCGACAGGCTGAACAGGCTGTATGGCTGCTAAACCTGTGGTCTCACTTCCGATGGACTCAAGATCATTCAGCTGAAGGAGTAGAGTCACCTCTAGTGGTAGAACTATTAGAATTCAATTTGCCTCAAAACATCAAGGCTGTGCCATCTCTAATAATCACAATAAAAATATGATCAACTGAAA

Function

NR:

description
low choriolytic enzyme-like

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004222 metalloendopeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K08076 E3.4.24.21; astacin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021607003.2 True 997 mRNA 0.52 10 57729444 57734935

Neighbor

gene id symbol gene type direction distance location
LOC110526217 hce2 coding upstream 13166 57713161 ~ 57716278 (+)
psmc3 psmc3 coding upstream 69515 57649932 ~ 57659929 (+)
aplnr2 LOC106586995 coding upstream 82391 57644667 ~ 57647053 (+)
LOC110526214 LOC106587124 coding upstream 86957 57639437 ~ 57642487 (+)
fbxo3 fbxo3 coding upstream 94203 57621795 ~ 57635241 (+)
LOC110526218 LOC106587128 coding downstream 9197 57744132 ~ 57760940 (+)
LOC110526223 LOC106561972 coding downstream 108059 57842994 ~ 57863756 (+)
fgf3 LOC106587135 coding downstream 181410 57916345 ~ 57921070 (+)
LOC110526226 LOC106587136 coding downstream 193843 57928778 ~ 57936266 (+)
fgf19 LOC106586997 coding downstream 206305 57941240 ~ 57943684 (+)
G525908 NA non-coding upstream 30680 57698450 ~ 57698764 (+)
G525905 NA non-coding upstream 33956 57695268 ~ 57695488 (+)
G525903 NA non-coding upstream 34604 57694632 ~ 57694840 (+)
G525897 NA non-coding upstream 47248 57681988 ~ 57682196 (+)
G525655 NA non-coding upstream 134775 57594401 ~ 57594669 (+)
G525969 NA non-coding downstream 75805 57810740 ~ 57810945 (+)
G526375 NA non-coding downstream 95606 57830541 ~ 57830787 (+)
G526386 NA non-coding downstream 105576 57840511 ~ 57840853 (+)
G526395 NA non-coding downstream 116058 57850993 ~ 57851197 (+)
G526411 NA non-coding downstream 134565 57869500 ~ 57869702 (+)
G525912 NA other upstream 19104 57703458 ~ 57710340 (+)
G525861 LOC106587122 other upstream 123077 57604108 ~ 57606367 (+)
G525645 NA other upstream 148374 57576084 ~ 57581070 (+)
G525972 NA other downstream 82889 57817824 ~ 57818280 (+)
G526547 NA other downstream 375971 58110906 ~ 58112819 (+)
G526628 LOC106587143 other downstream 537144 58272079 ~ 58272836 (+)
LOC110526933 LOC106562045 other downstream 583985 58318920 ~ 58408967 (+)
G527450 NA other downstream 1043788 58778723 ~ 58779017 (+)

Expression


Co-expression Network