LOC110526223 (LOC106561972)


Basic Information

Item Value
gene id LOC110526223
gene name LOC106561972
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 57842994 ~ 57863756 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036980581.1
tgtcaagtcaaccagcatttttgttATCAGCGCCTGCTTTTCCCAGTTTCTCTTTTtcttgccctcctggttttgacccttgcctgttcagactctgagcccgcctgcctgaccattctgcctgttcCAGATCAAAACTCCAGACCTACAACCTAATTATGACCAAAATTAACCGGAACGATTACTGCTACTAAATTTTCCTTTTCCAAGCCATACGGAGGGTGCTCTAGCAAACAAACAGcagagacctgaggacaccatccaacctggaactgaatCCCCGGCTTGCGGTTACAGATTGGGACAGACTCGTTGAGGAGATCAGGAGTTGTAGGACTTCTTCGCCCCAGTACTTCTCGTCGATGGCAGACTCCCGAGAAAGAAGGAAAACTGGCGAAGATGAGCCTCAGGGTGCAGTCGGGGGTGAAGATGTCAACGACGAGAGAATTATGGAACAAGGAGCTATTGTTTTAAGAGGGTATGTCATAGAGAGGATCGGTGCAGAAAACCCAGGGAGGCATTTGGCTCCAGAGGACCTTGGTGGCAGACCCAACGAACAACAGGACCACCAAGTCAAAAACATGGTACAACAGCTGCTGCTGATCGCTGATGACTTGAACAGAAATGCTGAGCTACAACACCTAATAAACAGAGTCCAGGTAAACTGTGCCCAGGATGTGTTCTTCTCAGTGGCCAGGGAAATCTTTGCAGATGGTATCAACTGGGGCAGAGTGGTCTCCCTGTTTCACTTGGCCTACAAGCTTATTTACAAGGCACTGACACAGAACCGCTTAGAAAGCATCAAGATGGTTATTAACTGGGTATTACAGTTCATCAGGGAAAATGTCTCCGCTTGGATCCGACAGCAAGGAGGATGGGAGGCGGTTATTAGCACCGTGTCACATTGGCGCACGGCGTCGCTTGTGGCTGCAGTGGCTTTCGTGACGGTCATGGTTTACTGGAGGAAAACACGCTGACGTCTCAGGAAGTGCCCTTGGTGAAATCAAAGTGCTCTTAAAATTTGTACATTTCTCTGGGAACGGGTTAATGTTAAACGGGTTAATATGCTATGTCCTGTGCAGTAGATTTGACTTTGGGGTAATGGTGACATAGTAATCTTGTTTTTATATGTTGAATTGATCTGAGAAGGAACAGTTGGTGCCTTTTGGTACTGTACTCCACACTGAGAAAGTATTTATTAGTACCAATGTGAAACTGTATTTTTCTAAAAATATTTTTCTATTGATCAAAAAAAGAACCTTGTAAAGTGTTTTATTGAACAATGTTTTTTGAGCATTAGAGGTTTTATTGAAGCCCTAATCTTCTATTGATTTGGAATTAAAAGTAAGCCACTACAATTTTTTTCACAGCtctaaatatatattatttttatgtATCTGAATGGAACAAATGTCTTTTAAATTGTGGCAAACATGCACACGTGTTTAATAAAAAATACTTTTGCCAAAGCAA
>XM_036980583.1
tgtcaagtcaaccagcatttttgttATCAGCGCCTGCTTTTCCCAGTTTCTCTTTTtcttgccctcctggttttgacccttgcctgttcagactctgagcccgcctgcctgaccattctgcctgttcCAGATCAAAACTCCAGACCTACAACCTAATTATGACCAAAATTAACCGGAACGATTACTGCTACTAAATTTTCCTTTTCCAAGCCATACGGAGGGTGCTCTAGCAAACAAACAGcagagacctgaggacaccatccaacctggaactgagtgacctaaactgggacatgcttaaaccacctgaccaagttcTGAAGCAACGGGACTCCCTAAATCCTTCTCAGagtattaccaatcccacaagatCCCCGGCTTGCGGTTACAGATTGGGACAGACTCGTTGAGGAGATCAGGAGTTGTAGGACTTCTTCGCCCCAGTACTTCTCGTCGATGGCAGACTCCCGAGAAAGAAGGAAAACTGGCGAAGATGAGCCTCAGGGTGCAGTCGGGGGTGAAGATGTCAACGACGAGAGAATTATGGAACAAGGAGCTATTGTTTTAAGAGGGTATGTCATAGAGAGGATCGGTGCAGAAAACCCAGGGAGGCATTTGGCTCCAGAGGACCTTGGTGGCAGACCCAACGAACAACAGGACCACCAAGTCAAAAACATGGTACAACAGCTGCTGCTGATCGCTGATGACTTGAACAGAAATGCTGAGCTACAACACCTAATAAACAGAGTCCAGGTAAACTGTGCCCAGGATGTGTTCTTCTCAGTGGCCAGGGAAATCTTTGCAGATGGTATCAACTGGGGCAGAGTGGTCTCCCTGTTTCACTTGGCCTACAAGCTTATTTACAAGGCACTGACACAGAACCGCTTAGAAAGCATCAAGATGGTTATTAACTGGGTATTACAGTTCATCAGGGAAAATGTCTCCGCTTGGATCCGACAGCAAGGAGGATGGGAGGCGGTTATTAGCACCGTGTCACATTGGCGCACGGCGTCGCTTGTGGCTGCAGTGGCTTTCGTGACGGTCATGGTTTACTGGAGGAAAACACGCTGACGTCTCAGGAAGTGCCCTTGGTGAAATCAAAGTGCTCTTAAAATTTGTACATTTCTCTGGGAACGGGTTAATGTTAAACGGGTTAATATGCTATGTCCTGTGCAGTAGATTTGACTTTGGGGTAATGGTGACATAGTAATCTTGTTTTTATATGTTGAATTGATCTGAGAAGGAACAGTTGGTGCCTTTTGGTACTGTACTCCACACTGAGAAAGTATTTATTAGTACCAATGTGAAACTGTATTTTTCTAAAAATATTTTTCTATTGATCAAAAAAAGAACCTTGTAAAGTGTTTTATTGAACAATGTTTTTTGAGCATTAGAGGTTTTATTGAAGCCCTAATCTTCTATTGATTTGGAATTAAAAGTAAGCCACTACAATTTTTTTCACAGCtctaaatatatattatttttatgtATCTGAATGGAACAAATGTCTTTTAAATTGTGGCAAACATGCACACGTGTTTAATAAAAAATACTTTTGCCAAAGCAA
>XM_036980582.1
ACGCAACATAGTGTCTACTCTGCCGGAAAGTACACGAAGAAGAGGCGCAATTTAGACACACAAGCAGCCCTGGGCACTTGCACAACCCACTGTTTATTTCCGTGTTACTTCCTGGTTCTGTCTAGTCTCTGGTGTTTTTCCGGAGAGAAATATatCCCCGGCTTGCGGTTACAGATTGGGACAGACTCGTTGAGGAGATCAGGAGTTGTAGGACTTCTTCGCCCCAGTACTTCTCGTCGATGGCAGACTCCCGAGAAAGAAGGAAAACTGGCGAAGATGAGCCTCAGGGTGCAGTCGGGGGTGAAGATGTCAACGACGAGAGAATTATGGAACAAGGAGCTATTGTTTTAAGAGGGTATGTCATAGAGAGGATCGGTGCAGAAAACCCAGGGAGGCATTTGGCTCCAGAGGACCTTGGTGGCAGACCCAACGAACAACAGGACCACCAAGTCAAAAACATGGTACAACAGCTGCTGCTGATCGCTGATGACTTGAACAGAAATGCTGAGCTACAACACCTAATAAACAGAGTCCAGGTAAACTGTGCCCAGGATGTGTTCTTCTCAGTGGCCAGGGAAATCTTTGCAGATGGTATCAACTGGGGCAGAGTGGTCTCCCTGTTTCACTTGGCCTACAAGCTTATTTACAAGGCACTGACACAGAACCGCTTAGAAAGCATCAAGATGGTTATTAACTGGGTATTACAGTTCATCAGGGAAAATGTCTCCGCTTGGATCCGACAGCAAGGAGGATGGGAGGCGGTTATTAGCACCGTGTCACATTGGCGCACGGCGTCGCTTGTGGCTGCAGTGGCTTTCGTGACGGTCATGGTTTACTGGAGGAAAACACGCTGACGTCTCAGGAAGTGCCCTTGGTGAAATCAAAGTGCTCTTAAAATTTGTACATTTCTCTGGGAACGGGTTAATGTTAAACGGGTTAATATGCTATGTCCTGTGCAGTAGATTTGACTTTGGGGTAATGGTGACATAGTAATCTTGTTTTTATATGTTGAATTGATCTGAGAAGGAACAGTTGGTGCCTTTTGGTACTGTACTCCACACTGAGAAAGTATTTATTAGTACCAATGTGAAACTGTATTTTTCTAAAAATATTTTTCTATTGATCAAAAAAAGAACCTTGTAAAGTGTTTTATTGAACAATGTTTTTTGAGCATTAGAGGTTTTATTGAAGCCCTAATCTTCTATTGATTTGGAATTAAAAGTAAGCCACTACAATTTTTTTCACAGCtctaaatatatattatttttatgtATCTGAATGGAACAAATGTCTTTTAAATTGTGGCAAACATGCACACGTGTTTAATAAAAAATACTTTTGCCAAAGCAA
>XM_021607009.2
CACGAAGAAGAGGCGCAATTTAGACACACAAGCAGCCCTGGGCACTTGCACAACCCACTGTTTATTTCCGTGTTACTTCCTGGTTCTGTCTAGTCTCTGGTGTTTTTCCGGAGAGAAATATGTAAACAGCGGTAACATTTTTTGGATTCGACTACATATCAACGCGAGCGACACAAGTCtaatcgttttttttttctttagatCCCCGGCTTGCGGTTACAGATTGGGACAGACTCGTTGAGGAGATCAGGAGTTGTAGGACTTCTTCGCCCCAGTACTTCTCGTCGATGGCAGACTCCCGAGAAAGAAGGAAAACTGGCGAAGATGAGCCTCAGGGTGCAGTCGGGGGTGAAGATGTCAACGACGAGAGAATTATGGAACAAGGAGCTATTGTTTTAAGAGGGTATGTCATAGAGAGGATCGGTGCAGAAAACCCAGGGAGGCATTTGGCTCCAGAGGACCTTGGTGGCAGACCCAACGAACAACAGGACCACCAAGTCAAAAACATGGTACAACAGCTGCTGCTGATCGCTGATGACTTGAACAGAAATGCTGAGCTACAACACCTAATAAACAGAGTCCAGGTAAACTGTGCCCAGGATGTGTTCTTCTCAGTGGCCAGGGAAATCTTTGCAGATGGTATCAACTGGGGCAGAGTGGTCTCCCTGTTTCACTTGGCCTACAAGCTTATTTACAAGGCACTGACACAGAACCGCTTAGAAAGCATCAAGATGGTTATTAACTGGGTATTACAGTTCATCAGGGAAAATGTCTCCGCTTGGATCCGACAGCAAGGAGGATGGGAGGCGGTTATTAGCACCGTGTCACATTGGCGCACGGCGTCGCTTGTGGCTGCAGTGGCTTTCGTGACGGTCATGGTTTACTGGAGGAAAACACGCTGACGTCTCAGGAAGTGCCCTTGGTGAAATCAAAGTGCTCTTAAAATTTGTACATTTCTCTGGGAACGGGTTAATGTTAAACGGGTTAATATGCTATGTCCTGTGCAGTAGATTTGACTTTGGGGTAATGGTGACATAGTAATCTTGTTTTTATATGTTGAATTGATCTGAGAAGGAACAGTTGGTGCCTTTTGGTACTGTACTCCACACTGAGAAAGTATTTATTAGTACCAATGTGAAACTGTATTTTTCTAAAAATATTTTTCTATTGATCAAAAAAAGAACCTTGTAAAGTGTTTTATTGAACAATGTTTTTTGAGCATTAGAGGTTTTATTGAAGCCCTAATCTTCTATTGATTTGGAATTAAAAGTAAGCCACTACAATTTTTTTCACAGCtctaaatatatattatttttatgtATCTGAATGGAACAAATGTCTTTTAAATTGTGGCAAACATGCACACGTGTTTAATAAAAAATACTTTTGCCAAAGCAA

Function

NR:

description
apoptosis regulator BAX-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036980581.1 False 1473 mRNA 0.43 7 57842994 57863756
XM_036980583.1 False 1567 mRNA 0.44 8 57842994 57863756
XM_036980582.1 False 1350 mRNA 0.43 7 57851727 57863756
XM_021607009.2 True 1398 mRNA 0.43 6 57851759 57863756

Neighbor

gene id symbol gene type direction distance location
LOC110526218 LOC106587128 coding upstream 82054 57744132 ~ 57760940 (+)
LOC110526219 LOC106587128 coding upstream 108059 57729444 ~ 57734935 (+)
LOC110526217 hce2 coding upstream 126716 57713161 ~ 57716278 (+)
psmc3 psmc3 coding upstream 183065 57649932 ~ 57659929 (+)
aplnr2 LOC106586995 coding upstream 195941 57644667 ~ 57647053 (+)
fgf3 LOC106587135 coding downstream 52589 57916345 ~ 57921070 (+)
LOC110526226 LOC106587136 coding downstream 65022 57928778 ~ 57936266 (+)
fgf19 LOC106586997 coding downstream 77484 57941240 ~ 57943684 (+)
LOC110526232 dhcr7 coding downstream 288084 58151840 ~ 58158582 (+)
LOC110526234 LOC106587141 coding downstream 355133 58218513 ~ 58228939 (+)
G526386 NA non-coding upstream 2141 57840511 ~ 57840853 (+)
G526375 NA non-coding upstream 12207 57830541 ~ 57830787 (+)
G525969 NA non-coding upstream 32049 57810740 ~ 57810945 (+)
G525908 NA non-coding upstream 144230 57698450 ~ 57698764 (+)
G525905 NA non-coding upstream 147506 57695268 ~ 57695488 (+)
G526411 NA non-coding downstream 5744 57869500 ~ 57869702 (+)
G526415 NA non-coding downstream 9010 57872766 ~ 57873110 (+)
G526416 NA non-coding downstream 9412 57873168 ~ 57873368 (+)
G526418 NA non-coding downstream 10360 57874116 ~ 57874980 (+)
G526447 NA non-coding downstream 80059 57943815 ~ 57945202 (+)
G525972 NA other upstream 24714 57817824 ~ 57818280 (+)
G525912 NA other upstream 132654 57703458 ~ 57710340 (+)
LOC110526214 LOC106587124 other upstream 200512 57639437 ~ 57642487 (+)
fbxo3 fbxo3 other upstream 215375 57621795 ~ 57635241 (+)
G525861 LOC106587122 other upstream 236627 57604108 ~ 57606367 (+)
G526547 NA other downstream 247150 58110906 ~ 58112819 (+)
G526628 LOC106587143 other downstream 408323 58272079 ~ 58272836 (+)
LOC110526933 LOC106562045 other downstream 455164 58318920 ~ 58408967 (+)
G527450 NA other downstream 914967 58778723 ~ 58779017 (+)
G528653 NA other downstream 1907952 59771708 ~ 59772084 (+)

Expression


Co-expression Network