LOC110526226 (LOC106587136)


Basic Information

Item Value
gene id LOC110526226
gene name LOC106587136
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 57928778 ~ 57936266 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021607014.2
AGCATGTACATTATGAGGGCTCCATCTGTTTAAAGTCGCTTAGAATACTGTCCCGTGATGCAGTAGGTAGTGCGTGATGTAATTTCGCAGCAGATATAAATATCGTAGACGAGGGAAAAGCGGCATGGCTGAGCCGCGCTTGCCTAGACGGCCAACACTTCAACTTATACTTGGACAAGTTCGACTCGAATCTACACACGTTACCTCCGAGAGGGACAGTCATACCAAGCAATAATAGATGTCGCACCAACGGGAACTCATCTTTGTCTTGGAATGAGCGTCTTTTGTAGCTTTTTTTCATTCGTTCCTTTTTTCTTATTCGGAGTTCAACGTAAAGACCGGCACTGGGGTGATATTTTTAGTCACTTAAACTCCCTCAAACACTGTAGGCTACTGCAGTGTTGGCAAGGATGGCTTTTCAATCGGCCCTCTTACCAATATTGGTCTTGGGACTGATGACTAGTTTGGTGCGTTGTGCCCCCTTCCCTGGCAGGCTGAATGGCACAGTGGAACGACACTGGGAGACACTCTACTCGCGGTCCTTGGCTCGGATCCCcggggagaaaagagagataaACCGGGACAGCGACTATCTTATGGGCATTAAACGGCTACGACGCCTTTATTGCAATGTAGGAATTGGGTTTCATATTCAAGTTTCACCCGATGGGAGAATAACAGGAGTGCACAGTGAAAACCGTTACAGTCTCCTTGAGATATCTCCAGTAGAGAGAGGAGTTGTGACAATCTTTGGCGTCCAAAGCAGTCTATTCGTGGCCATGAACAGCAAAGGGAAGCTGTACGGATCTGTTCATTACAACAACGAGTGCAAATTCAAAGAAACTCTCCTGGCAAATAATTACAACGCTTACGAATCGGTGGCATACCCAACGATGTACATTGGACTAAGCAAGACTGGTAAAACAAAAAGGGGAAACCGAGTGTCACCAGCCATGACGGTGACGCATTTCTTGCCAAGAATCTGAGTCACTCAGAAATAGACTTAACCTCAAAGGTGGGGTGAGGGGGACTCAAAATGATGCACTTTTAACTGGAGTTTTATGCAAGACTAAGTGTATCATCCTGTTTAAAATGTTATGTATAAGTTTGTATATCAGTTTATTTATTATGTAAAACAATTTTGTATTTGGGCAGGAAACAGGTCCTCACATCAGGGGGAATTTCAGAAATCAAcacatttatttatgttttttaatTTATCCGAAGTCTGCTGCTATTAAGTGTTTGGGTAAGTGAGATTCCTTTGTTGAATTATGGTTTTCTTTGCACTGTTTATAGACAAAATATTCTACAGCGACAGAGCAAAGGATACTTTTGTATGACTTATTTTTCTTCTATGGAATTAACTTCTAAGTCTTAGACCGATGTTCAAACAAGGGAAATATCAAATGATTGGTTTTAGAAGCAGAAGCAATTGTCCAATGGCAGGACTCTTTGTAGGCATTGGAGTCTAATTGAAACAGTATCAGCTTACTACTGGTTACAGAATGAGCCGCGTTGAAGTCCTATCCTCTCAAATCTGTTTTTAGCTCTGCCAGGGGGTTGAACTTTGAACTTTTCTGCAGTCAATCTTTGTCAGATCTATAAGACTCTGGATAGAGAGAGGCATCTTCTTGACATTGTATAAGCAGAGAATTTGAGAGTTTATAGGCAAGGTCAGTGTGCTGACACACAAGGCAGAAACCATAGCCATGGCTCTATAACATACAGCTTTTACGAGGGgaagtaaaaaaaaatcaaagtCCTCAGCTGTATAGAGGATATATGGATCCCAAAATGATTAATTGAAATCATCACAAGTTCCGCATCAGAGCTCCTCCCTGAGTGCAAAAAAAGAAGATAATGTAATGATTGTCACAGGTTGTTTTCCCCAAGTGTGTACACCGAAAaggtatactttttttttttttttttttttttggggggggggcatgcaTTGCCTCCCATTTCTTCCCATTGCCCCACTGTCCTTGTTATCTATCCTCTACCTCACATAATCAACAAATCCCCTCAAAACTTCTCTAAAGTTTGTCCTGTAGTAACTCTGTTGAACCAGTTTGAGATTAGCCCTAATCTTCTCGGAGCACCATGCCATAGGCAGAAGttcaggcagccattttgtcccagttGCGCCTTGTCACGTTTGAGCTATCTTTACCCTGTGATTTACTTTTAGAAAGGATGATCATGGTGGGAATATTTACAGACAGCTGTTAGACTGCACTATATGCTTAACCGGTAACCCTATATTtttctctatatattttgtaaatATAACCCCTGGTAACTGGCGGAGCAGAGCGATGCTGCTTCAAAAAGTCTGTTATTCCTCCTTTGGGATCATTCATTCACAGACGAAGGGGATTGACCAGGAGATGGCCCATGCCAgagggtgtctctctctctctgtctgtagtcccAGTCGGTATTCGCTTAATAATAAGGAATTCCCTCCACCACAAATTGGGGAAAAAACAACATTCTTTCCTATTGACCTCCATTGTAAAAGAGGCAACTTTCTTCATCGTTTTTTTACAATGTCGAAAAGCTGCTGTGTTCAACGTAACCAGGTCAAAAAATCCTGACCTACGGTTTGCAATGCTCCCACGTAGGGAAATAGAGCCTGCGAGAAGAGCCCTGTGCTGGGGCTTCAGGCTAGTCGGCGTGGGAGAGAGCGGGAAATCTGGGGACCCGgtgtccaagtaggctacacctagctatgtgtgtggaaaacatttcatCACAGCTAAGACATTTAACTTGCTTAGTATAGTCCATTTGTAACTCCACTCATTACTTGTAGCTGTATAAGccatttgtttgtgttgttggttttggctaatgttagctagctaccactAACGTGGCTGCTAGCACGGTCATGAAAAGGGGCATAAGGGAAGACCTACAATGTtacgtttttttgttgttctaTAAGTAGTGAGAACACTAGGAAGCTGGCAATGTTGAAAAGTTATCTTTAGGCATGTTGTACTTTTCGCAAATGTTAttttgtaattgactaaaacaagcagacaacaaGAAAGTTGCATTTGAAAAAGGTAACGTTTTTACTCTGAGCCAACAGAGCAACCTATGTTGCGGATGTTTTCCCCACAAGCGGGCCGGGCTGCAGCGTTCTATCTAATACCGACTGGGACTATTAGAATAGTTCTAGATTGTACGATGGTGTTCATTCTCTTCTGAGAGGGTTCCATCTCAGGTTCAACATTCCACATACCATGGCAGTTTACAAGGTGCAGTACTGATTTCAGACAACTCAAACTGGAAGCGAAGGCCCAGTGTTTTATATTCAATATAACAAAAGTAACAATAGCGTCCAAATCCTGAGAAATCTAACGAGGCGTAACTTTTGACACAGCAAATAGCTTTTCTAAATGCATCTCACTGGGTAGTAGTAAAAAATAGAATGGCTGAGGCTCCAGCAAATATCTCAGGGTGTTGTTGGTGAACTCTCGGTGTCCATTTCTAAACACCTGCTGTGGAAGTCTAGGTCTCCCGTAAAACAATCCTAACCTAGATCCCGTCTTGCCCTTCAAAAAAAAAGACACGAGCACACGGCAGCCAAAATGAGTCAAGACTACGATGCTCTTGTCTACCCTCCAGCTCCTGAGACCGACTGGTCAGAGAGCTATCCAATGCTGTACCAAACTTAATATTGTCACATATGACCTGGACGCTCAAAACACCTGTTGGTAATATTATTTAGTCACCCGAGACATCAGGCTGCACTGCCAATCCCATAACTATTTTCCTTTGCCACAGCTGTGCCAAACGTTCCCCAACAGACTGTTTTGCATGGCTCACCATAATGTTTACAAAAAGACTGAGAAGCCACTGGCAAATATTCTGTGACCTCTCCCATCGACCCTGTTCCAACCCCAGGAGAGTCACCTCATTTGCTTACACAGCAAGTGcacaagcaacacaacacaagtgcacaagcaacacaacacaatgatcGGAGAAGTGCACCATGTAGACAAGAGAGTTTGAACAATTGTTCAGACATTTAAATCTATCCCTGAATCTATCTGATGAGACGGCACAGAGACAAGAACTTCAAGTGCAGAATAACGAGCATGTTGTCAGTGTTAAATGGTCATCATCTATTGTCTCCTCTGGGCGCTCATTTCTTCCACTGCGGTGCGGTTTCTGCACCCATTGGAGGGCTCTTGGGTCTCAAGTAACAAGTGCTTTGAGTCCTGTGGTCTTGTTACTCATCATCTCTATTATCTGTAGTTTTATACAGGTCTTGTTAAATTATTTTGACGTATGTGCTGTGCACATGACTAATGCCTAACTTAAATTTGAAGTTAATAAAA

Function

NR:

description
fibroblast growth factor 4B-like

GO:

id name namespace
GO:0008543 fibroblast growth factor receptor signaling pathway biological_process
GO:0070121 Kupffer's vesicle development biological_process
GO:0007368 determination of left/right symmetry biological_process
GO:0060271 cilium assembly biological_process
GO:0005576 extracellular region cellular_component
GO:0005104 fibroblast growth factor receptor binding molecular_function
GO:0008083 growth factor activity molecular_function

KEGG:

id description
K04358 FGF; fibroblast growth factor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021607014.2 True 4367 mRNA 0.43 3 57928778 57936266

Neighbor

gene id symbol gene type direction distance location
fgf3 LOC106587135 coding upstream 7708 57916345 ~ 57921070 (+)
LOC110526223 LOC106561972 coding upstream 65022 57842994 ~ 57863756 (+)
LOC110526218 LOC106587128 coding upstream 167838 57744132 ~ 57760940 (+)
LOC110526219 LOC106587128 coding upstream 193843 57729444 ~ 57734935 (+)
LOC110526217 hce2 coding upstream 212500 57713161 ~ 57716278 (+)
fgf19 LOC106586997 coding downstream 4974 57941240 ~ 57943684 (+)
LOC110526232 dhcr7 coding downstream 215574 58151840 ~ 58158582 (+)
LOC110526234 LOC106587141 coding downstream 282623 58218513 ~ 58228939 (+)
LOC110526233 LOC106587142 coding downstream 292141 58228407 ~ 58236139 (+)
LOC110526235 LOC106586999 coding downstream 299994 58236260 ~ 58243577 (+)
G526418 NA non-coding upstream 53798 57874116 ~ 57874980 (+)
G526416 NA non-coding upstream 55410 57873168 ~ 57873368 (+)
G526415 NA non-coding upstream 55668 57872766 ~ 57873110 (+)
G526411 NA non-coding upstream 59076 57869500 ~ 57869702 (+)
G526395 NA non-coding upstream 77581 57850993 ~ 57851197 (+)
G526447 NA non-coding downstream 7549 57943815 ~ 57945202 (+)
G526462 NA non-coding downstream 15267 57951533 ~ 57951744 (+)
G526476 NA non-coding downstream 45977 57982243 ~ 57982469 (+)
G526491 NA non-coding downstream 69972 58006238 ~ 58006461 (+)
G526515 NA non-coding downstream 99029 58035295 ~ 58040467 (+)
G525972 NA other upstream 110498 57817824 ~ 57818280 (+)
G525912 NA other upstream 218438 57703458 ~ 57710340 (+)
LOC110526214 LOC106587124 other upstream 286296 57639437 ~ 57642487 (+)
fbxo3 fbxo3 other upstream 301159 57621795 ~ 57635241 (+)
G525861 LOC106587122 other upstream 322411 57604108 ~ 57606367 (+)
G526547 NA other downstream 174640 58110906 ~ 58112819 (+)
G526628 LOC106587143 other downstream 335813 58272079 ~ 58272836 (+)
LOC110526933 LOC106562045 other downstream 382654 58318920 ~ 58408967 (+)
G527450 NA other downstream 842457 58778723 ~ 58779017 (+)
G528653 NA other downstream 1835442 59771708 ~ 59772084 (+)

Expression


Co-expression Network