ccnd1 (LOC106587137)


Basic Information

Item Value
gene id ccnd1
gene name LOC106587137
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 57955388 ~ 57962808 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021607016.2
TCCATACCTATAGGAGTGGATAAGCAGCGATTGGAAGGACTTGGAAACTTTAGAGGGGTAGTTCTTTAGAgtgatcctcctctctctatagactcCTTAGCTCGGCTCTCTCAGACTCGCTGTTGCTTTGATATCCTCCTTAACAACAGTTAACGTCATCGCATAGCCCTCTGAAGGGGAGTTTTGTCTAGAAGGGTGAAGCGTTGGAGCTCTCAGAGGGCTTACACTGTAGGAGCAGCAAGCAGCATCCACGGAGCCTCACTCACTCCTAACAAGAAGCACATATTTTGATTATTTATTCAGCCCAGAAAACGCAAGATACTACCGCAAAAGATATGGAGCACCAGCTGCTGTGCTGTGAAGTGGAAACCATCAGAAGAGCTTACCAAGACGCCAACTTACTAAATGACCGAGTTCTACAGACAATGCTCAAAGCAGAGGAAAATTATCTCCCGTCTCCGAATTACTTCAAGTGTGTCCAGAAAGAAATAATACCTAAAATGAGGAAAATTGTGGCTACATGGATGTTAGAGGTCTGCGAGGAACAGAAATGCGAGGAGGAGGTTTTTCCCCTGGCTATGAACTACTTGGATAGATTTTTGTCTGTGGAGCCCACAAATAAAACCAGATTACAACTCCTGGGAGCTACTTGTATGTTTTTGGCCTCAAAGATGAAGGAAACGGTCCCTTTAACTGCAGAGAAGTTGTGCATTTACACCGACAACTCCATCCGGCCCAGCGATCTATTGCAAATGGAACTACTGACTCTAAACAAGTTGAAATGGGATCTAGCATCAGTAACACCTCACGATTTCATAGACCATTTCCTCTCCAAGCTACCAATCCATCAGCACACGAAGCAGATTCTGCGCAAGCATGCCCAGACATTCGTGGCTCTCTGTGCAACAGATGTCAAATTcatcgccctccctccctccatgatCGCAGCAGGCAGTGTGGCAGCAGCGGTGCAGGGGCTGTACCTAAAGAGCAAAGACGGTGCACTATCATCCCAGAACCTAACCAACTTTCTGTCCCAAGTCATCAGGAGTGACCCGgaCTGCCTGAAGTCGTGTCAGGAACAGATTGAGTCTCTGCTTGAGTCTAGTCTGAGACAGGCACAGCAACATAGTGTCTCCACAGAAACAAAaagggtagaggaggatgtggaCCTGTCCTGCACCCCTACAGACGTGAGGGACATTAACATTTGAGTGGCATCTTCCCCATTTTTTTTGGAAATATTTTTGAGGCTCTGGCCTTACCATGAGGCCATCTGGGAAAAGAGGACACCAGCGCACCCTCGAGTCGTCACCCTCTGAACACACTCTGGCAAACGCTAAATGTGCCACACCTGTTACGGTGCCCCGGCCTTGTATGGCCTCCCAGTGACATGTGGCCGCCCTCAGCCAGGGCTGTCAAGAAAGGACTGAACACCTCACTTTTCTGAGACCTTCAGTCAtattccctctcattctcccatcCCGTCTGGCTCAAGACATAGACAAGGATGATAGCAAAAATGAATTCTTGTGAAAGATACACAACTATATGgatgaaacaaaaacatttatAGTTTATGTGCAAGATTAAGCCACAGAAATATACATTGTTACTACCCAATGTTGAactaggattttttttaaataccataGACTGATTCTACATGCTtacttaaaacatttaaaataacaaGTAGGTATTTTTTGTCTGTCTTTTGTGTCTAGGTTTTTATTTGAAGTATAAATTCATTTATAAAAGAGAAGGGGCATTTTTGTTATCTATTAGGCATTTTGCTTGCTATCAAAGCTCCTGTTTTCCCCCCAGTCTAGTCGTCTGTATATCCCTGCTTGCTTATGCGTTTAATCACTTTATTAAATTGTCTAGACTTCTAAAGAAATTCTGAGCCCCTAGTTTTGGCCTCTTCTCTTTTTAACTGAGTTGTATAGCTCAACAGTATACTTTTAGTATATATTGCTCTGTTTTATTGTTTAGATTGTGGATTGCTGATGCTGAGGTTTGGCAAATAAGTTCATTCATTCTTCAGTATAAGGACAATTACTTTATATTCAATTAGGAGTAAATTGAATGAACCAGCGTTGTTTGGCTGTTGATTTGTGATTTATTCTGTCCTCATTGCTACATATGTACATATATCAACAGCTAGCTATGACACAATAAGCTAAAAATCTAGCATTAGTTGCAAACCTTTACCATGCAATCCATAGTTAATTTTTTTTTGTGGTTATATCTTACTTTCTAATACCGTTCCATTTTTAAAAGCACTTTTAgtcaggtttttttttttctgaCTCATAAAAGAAAAATcacaaaaaaatggaaaaaatggTATGGAGTGGAGCAGGTCTCTTTTAACTATGGTGTTATGTGTTACAATTTTGGGTACAAGTCAACGCAGCCCTTACAGCAATCCCGTGTCCCCTTGATGTAGAAGGGTATTCTTTTGGAGATTGTTATGCCACAGTTCTTACAGGAGGGGTCTATAGTGAGACGAGCGTTGGGTGTGGCATGTTTCTGCATCCTGTATCCCATCGCTTGAACGGCATCCAGAGCATTTGAAACACTAAAGTATCAAACTTGAAAGCTAAAACAAAGATGAACAGTGTTTATTACATGTTTTCCTCTTGGAGCCAGTGCAGATTAGAAACAGGATGCCAAAGTCTGTCTGTGTACGTAACATTTTGTACACAACTATTTACCAGAGTGCTAAACGCGACTGCCCTCCAAATCATGTATGACAGTGTTTTCTCAACACAAAACTGAAAGAAAAACACCATAGTTAAAATGCTGTTTAGAATATGTGTAGTTGAGGGGataaaaatacaacaacaaaaaaaataggtTTAGAGATGATTTTTGCACAAACCTGAAGACATAGGCTATGTTTTTGTGGCTTGCCTAAGAGAAGTGGATCACTAAGATGGGATGGGTAACGTTGAAAAGTGGGAGTGGGGAAAAAGCGAGGCAAAAAGGGTGACAGCTTGACAGCAACACGTTTCTGTTGAATTGCTGAATTAAGGTGTTTGATTGTACATTGAGAAAAAGAGACAAGAAAACAGGATAATGGGAGACCACACTCCTCCTTTTGAGCTGCTATGGAGGAATTTCCAGCAAAGTGTAAAACAACAAGAAAAAAACCATGCTTTTTCTCCTATTGTTTGCTGCtatatattttatacatataAAATGTCAATATACTGCCATGTAATAGGTTTTTAATTTTCTATGAGAAAATTGTTATTGACGTCTTTGTTTTTGTAGTCTTGTCATCAGTTTTTACTTTAATATGATTTCAGTGCTATTCCAAAAAGATGAAAAAATTAGACAATGGACATGGTTTTTATCAACAATACCTCATATTACAGTCAAGATTTATCTTTAATTTAGTTTTGaattttgattttattttactTGTTTGTTCAGTGGCTGATTGTCCTGTTTTTAAACTGCTAATGGTAATGCATTGATCATTATCCAAATGGGTCCTGATGTGAGCAAGTAGAGAGCATTGATTGAAACTGGTGCCATAACAGACCAGATTATATAACTCTTTTGAGTGTTAAGCTGTCTCATTGAAAGAGTCTTTATCCCCTTTAAGCTCCTGAAGGCCCtgctattttttatatatatataaagcattTGCTCAAGTTAAAACCCGTAATGAGTTTGAGTTTGTTAAATACCAAGCCATAGAATTATTTTCAAATCATCATGCCGTTATACCACACAGTTCAGTACATGCTTGTCTAGATATCTTGTTCTCCACCAAGAAGCATAGCATATTGATATTTGTGTCAACTGCACAATAAATGGTAAATAGATTTAAATCTTGGAACACTgcaatttttttcttaactgaacCACTACTGGTACATTGAAGCTAAAATAATGGGCTACAGATATTGTTAGGCACACTTCCATTTGACCCAGACATCCTTCAATCAGAGTTAATGAGTGTGAGAGCCAACAGTGGTTCACTTAGCCATAGACATGATGCTGCTATATGTTCTGGTTGTAGATGTGAGGTAGGCCTAGTGTTGCCTAGTATTTGACAAATGATGTTGCTGCAAGCTGCTCAAATTTCTACTAGCTAACACAGGACCCAGGATGGAGATATTGTTTTTCTGTCTAGTGTAAGGAATACTTGTTACCTCaaaaaatggggaaaaaaatacattgatGCCCTTGGGCTCAACTAAAGATGACATTACATATTTCTGTCATATGAATAAAAAGTGCTGATAGTAAAAATGAAAACAGAAGGGGTGGAGATCTTTGTCCAAACTTCAACAGAATGtgcttaccccccccccccc
>TU596897
cctcctctctctatagactcCTTAGCTCGGCTCTCTCAGACTCGCTGTTGCTTTGATATCCTCCTTAACAACAGTTAACGTCATCGCATAGCCCTCTGAAGGGGAGTTTTGTCTAGAAGGGTGAAGCGTTGGAGCTCTCAGAGGGCTTACACTGTAGGAGCAGCAAGCAGCATCCACGGAGCCTCACTCACTCCTAACAAGAAGCACATATTTTGATTATTTATTCAGCCCAGAAAACGCAAGATACTACCGCAAAAGATATGGAGCACCAGCTGCTGTGCTGTGAAGTGGAAACCATCAGAAGAGCTTACCAAGACGCCAACTTACTAAATGACCGAGTTCTACAGACAATGCTCAAAGCAGAGGAAAATTATCTCCCGTCTCCGAATTACTTCAAGTGTGTCCAGAAAGAAATAATACCTAAAATGAGGAAAATTGTGGCTACATGGATGTTAGAGATGTCAAATTcatcgccctccctccctccatgatCGCAGCAGGCAGTGTGGCAGCAGCGGTGCAGGGGCTGTACCTAAAGAGCAAAGACGGTGCACTATCATCCCAGAACCTAACCAACTTTCTGTCCCAAGTCATCAGGAGTGACCCGgaCTGCCTGAAGTCGTGTCAGGAACAGATTGAGTCTCTGCTTGAGTCTAGTCTGAGACAGGCACAGCAACATAGTGTCTCCACAGAAACAAAaagggtagaggaggatgtggaCCTGTCCTGCACCCCTACAGACGTGAGGGACATTAACATTTGAGTGGCATCTTCCCCATTTTTTTTGGAAATATTTTTGAGGCTCTGGCCTTACCATGAGGCCATCTGGGAAAAGAGGACACCAGCGCACCCTCGAGTCGTCACCCTCTGAACACACTCTGGCAAACGCTAAATGTGCCACACCTGTTACGGTGCCCCGGCCTTGTATGGCCTCCCAGTGACATGTGGCCGCCCTCAGCCAGGGCTGTCAAGAAAGGACTGAACACCTCACTTTTCTGAGACCTTCAGTCAtattccctctcattctcccatcCCGTCTGGCTCAAGACATAGACAAGGATGATAGCAAAAATGAATTCTTGTGAAAGATACACAACTATATGgatgaaacaaaaacatttatAGTTTATGTGCAAGATTAAGCCACAGAAATATACATTGTTACTACCCAATGTTGAactaggattttttttaaataccataGACTGATTCTACATGCTtacttaaaacatttaaaataacaaGTAGGTATTTTTTGTCTGTCTTTTGTGTCTAGGTTTTTATTTGAAGTATAAATTCATTTATAAAAGAGAAGGGGCATTTTTGTTATCTATTAGGCATTTTGCTTGCTATCAAAGCTCCTGTTTTCCCCCCAGTCTAGTCGTCTGTATATCCCTGCTTGCTTATGCGTTTAATCACTTTATTAAATTGTCTAGACTTCTAAAGAAATTCTGAGCCCCTAGTTTTGGCCTCTTCTCTTTTTAACTGAGTTGTATAGCTCAACAGTATACTTTTAGTATATATTGCTCTGTTTTATTGTTTAGATTGTGGATTGCTGATGCTGAGGTTTGGCAAATAAGTTCATTCATTCTTCAGTATAAGGACAATTACTTTATATTCAATTAGGAGTAAATTGAATGAACCAGCGTTGTTTGGCTGTTGATTTGTGATTTATTCTGTCCTCATTGCTACATATGTACATATATCAACAGCTAGCTATGACACAATAAGCTAAAAATCTAGCATTAGTTGCAAACCTTTACCATGCAATCCATAGTTAATTTTTTTTTGTGGTTATATCTTACTTTCTAATACCGTTCCATTTTTAAAAGCACTTTTAgtcaggtttttttttttctgaCTCATAAAAGAAAAATcacaaaaaaatggaaaaaatggTATGGAGTGGAGCAGGTCTCTTTTAACTATGGTGTTATGTGTTACAATTTTGGGTACAAGTCAACGCAGCCCTTACAGCAATCCCGTGTCCCCTTGATGTAGAAGGGTATTCTTTTGGAGATTGTTATGCCACAGTTCTTACAGGAGGGGTCTATAGTGAGACGAGCGTTGGGTGTGGCATGTTTCTGCATCCTGTATCCCATCGCTTGAACGGCATCCAGAGCATTTGAAACACTAAAGTATCAAACTTGAAAGCTAAAACAAAGATGAACAGTGTTTATTACATGTTTTCCTCTTGGAGCCAGTGCAGATTAGAAACAGGATGCCAAAGTCTGTCTGTGTACGTAACATTTTGTACACAACTATTTACCAGAGTGCTAAACGCGACTGCCCTCCAAATCATGTATGACAGTGTTTTCTCAACACAAAACTGAAAGAAAAACACCATAGTTAAAATGCTGTTTAGAATATGTGTAGTTGAGGGGataaaaatacaacaacaaaaaaaataggtTTAGAGATGATTTTTGCACAAACCTGAAGACATAGGCTATGTTTTTGTGGCTTGCCTAAGAGAAGTGGATCACTAAGATGGGATGGGTAACGTTGAAAAGTGGGAGTGGGGAAAAAGCGAGGCAAAAAGGGTGACAGCTTGACAGCAACACGTTTCTGTTGAATTGCTGAATTAAGGTGTTTGATTGTACATTGAGAAAAAGAGACAAGAAAACAGGATAATGGGAGACCACACTCCTCCTTTTGAGCTGCTATGGAGGAATTTCCAGCAAAGTGTAAAACAACAAGAAAAAAACCATGCTTTTTCTCCTATTGTTTGCTGCtatatattttatacatataAAATGTCAATATACTGCCATGTAATAGGTTTTTAATTTTCTATGAGAAAATTGTTATTGACGTCTTTGTTTTTGTAGTCTTGTCATCAGTTTTTACTTTAATATGATTTCAGTGCTATTCCAAAAAGATGAAAAAATTAGACAATGGACATGGTTTTTATCAACAATACCTCATATTACAGTCAAGATTTATCTTTAATTTAGTTTTGaattttgattttattttactTGTTTGTTCAGTGGCTGATTGTCCTGTTTTTAAACTGCTAATGGTAATGCATTGATCATTATCCAAATGGGTCCTGATGTGAGCAAGTAGAGAGCATTGATTGAAACTGGTGCCATAACAGACCAGATTATATAACTCTTTTGAGTGTTAAGCTGTCTCATTGAAAGAGTCTTTATCCCCTTTAAGCTCCTGAAGGCCCtgctattttttatatatatataaagcattTGCTCAAGTTAAAACCCGTAATGAGTTTGAGTTTGTTAAATACCAAGCCATAGAATTATTTTCAAATCATCATGCCGTTATACCACACAGTTCAGTACATGCTTGTCTAGATATCTTGTTCTCCACCAAGAAGCATAGCATATTGATATTTGTGTCAACTGCACAATAAATGGTAAATAGATTTAAATCTTGGAACACTgcaatttttttcttaactgaacCACTACTGGTACATTGAAGCTAAAATAATGGGCTACAGATATTGTTAGGCACACTTCCATTTGACCCAGACATCCTTCAATCAGAGTTAATGAGTGTGAGAGCCAACAGTGGTTCACTTAGCCATAGACATGATGCTGCTATATGTTCTGGTTGTAGATGTGAGGTAGGCCTAGTGTTGCCTAGTATTTGACAAATGATGTTGCTGCAAGCTGCTCAAATTTCTACTAGCTAACACAGGACCCAGGATGGAGATATTGTTTTTCTGTCTAGTGTAAGGAATACTTGTTACCTCaaaaaatggggaaaaaaatacattgatGCCCTTGGGCTCAACTAAAGATGACATTACATATTTCTGTCATATGAATAAAAAGTGCTGATAGTAAAAATGAAAACAGAAGGGGTGGAGATCTTTGTCCAAACTTCAACAGAAT

Function

NR:

description
G1/S-specific cyclin-D1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021607016.2 False 4337 mRNA 0.40 5 57955388 57962808
TU596897 True 3866 TUCP 0.39 3 57955408 57962733

Neighbor

gene id symbol gene type direction distance location
LOC110526227 NA coding downstream 14531 57922059 ~ 57940857 (-)
ano1a LOC106587130 coding downstream 146487 57763612 ~ 57808901 (-)
fadd LOC106587129 coding downstream 192892 57760921 ~ 57762496 (-)
mtch2 LOC106587126 coding downstream 277577 57659916 ~ 57677811 (-)
syt13 LOC106587122 coding downstream 333606 57595493 ~ 57621782 (-)
LOC110526229 tpcn2 coding upstream 150057 58112865 ~ 58136498 (-)
LOC118965036 nadsyn1 coding upstream 178687 58141495 ~ 58143427 (-)
LOC110526231 NA coding upstream 179652 58142460 ~ 58150986 (-)
LOC110526932 LOC106587140 coding upstream 231295 58194103 ~ 58218894 (-)
LOC110524145 NA coding upstream 290928 58253736 ~ 58256104 (-)
G526734 NA non-coding downstream 10470 57943607 ~ 57944918 (-)
G526720 NA non-coding downstream 60456 57894598 ~ 57894932 (-)
G526359 NA non-coding downstream 142972 57812186 ~ 57812416 (-)
G526287 NA non-coding downstream 264577 57690076 ~ 57690811 (-)
G526740 NA non-coding upstream 1063 57963871 ~ 57964091 (-)
G526741 NA non-coding upstream 1740 57964548 ~ 57964767 (-)
G526742 NA non-coding upstream 3344 57966152 ~ 57966365 (-)
G526751 NA non-coding upstream 18128 57980936 ~ 57981175 (-)
G526766 NA non-coding upstream 41851 58004659 ~ 58004945 (-)
G526016 NA other downstream 808164 57146898 ~ 57147224 (-)
LOC110526187 LOC106587097 other downstream 1009063 56893209 ~ 56947117 (-)
G525008 LOC106561927 other downstream 1652737 56167431 ~ 56302651 (-)
G524834 NA other downstream 1985716 55968340 ~ 55969672 (-)
G521468 NA other downstream 4143350 53811713 ~ 53812038 (-)
G526752 NA other upstream 18659 57981467 ~ 57981791 (-)
G526784 dhcr7 other upstream 189042 58151850 ~ 58154916 (-)
G526903 NA other upstream 295744 58258552 ~ 58258976 (-)
G527449 NA other upstream 814974 58777782 ~ 58778467 (-)
znf536 LOC106562015 other upstream 1565512 59507092 ~ 59698393 (-)

Expression


Co-expression Network