LOC110526232 (dhcr7)


Basic Information

Item Value
gene id LOC110526232
gene name dhcr7
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 58151840 ~ 58158582 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021607019.2
CGTTTACACGCATTTATTATTTGGGCGGAGCGGTTGTTAATATATAACCTTTTATTCGTTATATCGTAAACATCTGGGCCAAGAGTTTTCCCATAGGTCCTAAAAGTTGtctccctagAGATGTCTTCTGCAGTGGCCATGGAGGCCACCCGGAGGCGCCAGAGGCTCAGCTCTAACGGGGGGGCGTCTGAGACCACGGAGGAACCTGCAGGGCAGTGGGGAAGAGCATGGGAGGTGGACTGGTTCTCTCTGAGCGCTGTGATCCTGCTGCTGTGCACAGCTCCCTTCCTGGTGTTCTTCTTTGTCATGGTGTGTGACCAGTACCAGTGCTCGGTCAGCCAGCCCCTGGTGGAGCTCTACAGTGGAGAGGCCACCCTGCGCTCCATCTGGGACAAGGCCCCTTCCTTCACCTGGACCGCTGCTCAGATCTACACCGTCTGGGTCTCCTTCCAGGTGGTGCTCTACATGTGTGTTCCTGATGTCACTCATAAGTTCCTGCCTGGCTATGCAGGTGGGGTTCAGGATGGAGCTCGCACCCCAGCAGGCCTCATAAACAAGTATGAGATCAACGGTTTACAGTCGTGGCTGATCACCCATGCCCTGTGGTATGCCAACGCTCAATACTTCCACTGGTTTTCCCCCACCATAATCTTCGACAACTGGATCCCACTGCTGTGGTGCACCAACATACTGGGCTATGCTGTGTCCACCTTTGCCTTTGTCAAGGCCTACCTCTTCCCCACCAATGCAGAGGACTGCAAATTCACAGGCAACGTCTTCTATAACTACATGATGGGCATTGAGTTCAATCCCCGCATCGGCAAATGGTTCGACTTCAAGCTCTTCTTCAACGGGAGACCTGGTATTGTTGCCTGGACTCTAATCAACCTCTCCTATGCAGCCAAACAGCAGGAGCTATATGGCTATGTGACCAATTCTATGATCCTGGTTAATGTGCTGCAGGCAATCTATGTTCTCGACTTCTTCTGGAATGAGGCATGGTACCTGAAGACGATTGACATCTGCCATGACCACTTCGGCTGGTACCTGGGCTGGGGAGACTGTGTGTGGCTGCCCTTCCTCTACACGCTGCAGGGCCTGTACCTGGTGTACAACCCAGTCCAGCTCTCCACAGCCCAtgctgctgctgtcctcctcttGGGTCTGGTGGGTTACTACGTCTTCCGCTCCACCAACCACCAGAAGGACCTGTTCCGCCGTACCGAGGGGAAGTGCTCCGTCTGGGGCAAGAAGCCCACCTTCATTGAGTGTGCCTACCGCTCGGGTGACGGCGGCCTGCACCACAGCAAGCTCATGACCTCCGGCTTCTGGGGCGTGGCACGCCACCTCAACTACACGGGCGACCTGATGGGCTCGCTGGCCTACTGTGCAGCCTGCGGCTTCGGCCATATTCACCCCTACTTCTACATCGTCTACATGACCATCCTGCTGGTGCACCGCTGTGTGAGAGACGAGCATCGCTGCAGCAGCAAGTACGGCAAAGACTGGAAGCGCTACACGGATGCAGTTCCCTATCGCCTGCTGCCTGGGATCTTCTAGAGTCGAGTCAGAGGTTGAAGGAATCCCTGCATCCTGAAAGAAGTTTAACAGAAGAAGGAGATGTGTGTTAAATGGACTGTTCACATTCCATGGGAAAGACGTTGATGACATTTtgagcaaagtgtgtgtgtgtgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgcaatcctCAGCTACTCTCAGAACTGCTCTCACCGGTGCCTAGGAGCATTTCTCCGTAAATGTTGATACTATGGTACATATCTATGTTCTATGGTACATAGATGCTATGAGAAACTCTGCAAAATTGATTTCTAATTCAAATCTGTATTtaagtgtactgtagtctagcaATGTGAACATCACATAACCATACAGTAGCACTTAGTTGGCGTTGGTCAAGTAACTACAGCTACAAGTGAGCAATAATCTAGATGTCTTTTGACAATGCACTGTCGATGGCAAATGTCTCTTCTACTTAGGGGTCAGCCCAGCGTTACATGAAACGCTAGCAGCAGACTGGTATATTATGTTCAAGAAGCAGCTACAACTATACAATGATTGTTCCTGctaaaatacatttttctttatttctgtCAATATCTTTGAGGTACCTGTTATTTTAAAGTTTTTGTGCTAATAGTGCTTTTACTTTATCCAACAGTCATTTTGACATTTGATTTCAGTTGTTTGccttctttttaaaaaaaaaatttaacctCATCTGCCTTTCCTCAAGTGATAACTTAGAAAAGTAAATAAACCTAACATGGTGAATACA

Function

symbol description
dhcr7 Enables oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor. Predicted to be involved in brassinosteroid biosynthetic process and cholesterol biosynthetic process. Predicted to act upstream of or within cholesterol metabolic process and steroid biosynthetic process. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be integral component of endoplasmic reticulum membrane. Is expressed in alar plate midbrain region; digestive system; optic tectum; optic vesicle; and retina. Human ortholog(s) of this gene implicated in Smith-Lemli-Opitz syndrome. Orthologous to human DHCR7 (7-dehydrocholesterol reductase).

NR:

description
7-dehydrocholesterol reductase-like

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016020 membrane cellular_component
GO:0016628 oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor molecular_function

KEGG:

id description
K00213 DHCR7; 7-dehydrocholesterol reductase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021607019.2 True 2323 mRNA 0.49 8 58151840 58158582

Neighbor

gene id symbol gene type direction distance location
fgf19 LOC106586997 coding upstream 208156 57941240 ~ 57943684 (+)
LOC110526226 LOC106587136 coding upstream 215574 57928778 ~ 57936266 (+)
fgf3 LOC106587135 coding upstream 230770 57916345 ~ 57921070 (+)
LOC110526223 LOC106561972 coding upstream 288084 57842994 ~ 57863756 (+)
LOC110526218 LOC106587128 coding upstream 390900 57744132 ~ 57760940 (+)
LOC110526234 LOC106587141 coding downstream 60307 58218513 ~ 58228939 (+)
LOC110526233 LOC106587142 coding downstream 69825 58228407 ~ 58236139 (+)
LOC110526235 LOC106586999 coding downstream 77678 58236260 ~ 58243577 (+)
LOC110526238 LOC106587144 coding downstream 101921 58260503 ~ 58263649 (+)
LOC110526933 LOC106562045 coding downstream 185563 58318920 ~ 58408967 (+)
G526574 NA non-coding upstream 5506 58144622 ~ 58146334 (+)
G526544 NA non-coding upstream 45103 58106525 ~ 58106737 (+)
G526542 NA non-coding upstream 46516 58105073 ~ 58105324 (+)
G526538 NA non-coding upstream 50347 58101255 ~ 58101493 (+)
G526536 NA non-coding upstream 53664 58097930 ~ 58098176 (+)
G526581 NA non-coding downstream 754 58159336 ~ 58159886 (+)
G526582 NA non-coding downstream 5163 58163745 ~ 58164057 (+)
G526589 NA non-coding downstream 21578 58180160 ~ 58180369 (+)
G526591 NA non-coding downstream 23004 58181586 ~ 58181789 (+)
G526506 LOC106587140 non-coding downstream 35557 58194139 ~ 58200097 (+)
G526547 NA other upstream 39021 58110906 ~ 58112819 (+)
G525972 NA other upstream 333560 57817824 ~ 57818280 (+)
G525912 NA other upstream 441500 57703458 ~ 57710340 (+)
LOC110526214 LOC106587124 other upstream 509358 57639437 ~ 57642487 (+)
fbxo3 fbxo3 other upstream 524221 57621795 ~ 57635241 (+)
G526628 LOC106587143 other downstream 113497 58272079 ~ 58272836 (+)
G527450 NA other downstream 620141 58778723 ~ 58779017 (+)
G528653 NA other downstream 1613126 59771708 ~ 59772084 (+)
LOC110526282 LOC106561985 other downstream 3813154 61971487 ~ 61979527 (+)

Expression


Co-expression Network