LOC110526238 (LOC106587144)


Basic Information

Item Value
gene id LOC110526238
gene name LOC106587144
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 58260503 ~ 58263649 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021607033.2
gttatcaactgtactgcagggatggaacatAAGTCACTGAATATTGGTGGCAGCTGCAAAGAGTTATTTGGGTCAGAAGAGTTACAAGGTGTTAATTGGTGGTGTCCCAACCTTTTAGGCTGTTGGCTTGAGGTAGgattaaaaatatgtatttagtggagtagggttagatggtagggtatgtGTTGATTTATgtattttatgattatttattttaagTATAAGGAgtatactccagtctagtaggtggcggcaATGCAACATttgttggatgccaaccgccgtaaAACCTAATCGAAGAAGATACCATAGTATTGGGAGAATCCTGCCTCCTCTTTCACAAGTGCGactatagctagctagttacggTAGTGCCAGCTGGAGCAGCCATGGATCCAAGCACCACTATTCTCCGGgtgaaaagaaagagaggaacTGACCCTGCCGATGCGTTGCTGCTTGCCTGTAAACGTATTCGGCCAGAGACCACATCCCAGACCGCTGGGGAAACTGTGCCTGAGCCCGATGATGTAGAGGTTGAGAATTCAGTCTTCAAACTCGTGGCAACCGTAGCGTCACAGGATGCCCCAGTCCAGACACAGGTTCGTGAAGCACTGGCCCGCCCCCGCATGGCCCACGCCCTGCGCCCGTCAGGCAGCTCCCAGAGGATTGTGGGAGATCTGCGGAGCGTAAAGTGGAGCACCAGGCGGGAGGAGCGATACAGGATCCTCTCCAGCCATCGAGCAGGGATGCCTGCAGAACAGTCCCCCTCAACGCAGCCAGAGCCCACAGAGGAGCCAGGGAAAAATGCCTGGAGCCTGGGTGAAGTTCAGGTGTTTGACATCATCCAGGAAGATGGGGACCCGGACAAAGCACCTAGAAAGTTGCTGACCCCTGACCCAGAGACGATCCTGTGTAACTCGATGAAGATGCTCCGTGAGAAGCTGAGTGTGTCTGGAGAGGGTGTGGGTGTTGAGCATCGTGAACGGGAGGACGACTACGTGTATGACCTTTACTACCAGGAAACAGTCGCTGCAGGCTGGATCCAGGACATCCTGTCCGTCAGGCCCTACTCAGACGAGGGAGAGTTGGTGCCTGACTTGGTGGTGAATGAGGAAGTGTATGAGAATGAAGAGGGGAACTGGAGGAATGACTACCCAGATGAGGATGGCAGTGACAGAGAGGAGCGCTATGGAGGGTCCTGGGAAGAGCACTCATACAGTCGGAGATCCTGGGACCAATACCAGGGCGAGGTGATGCAGGagttagatgatgatgatgataatggagACAAGGATGACTCTGACTGATCTCCAACTTTGAGCATTGGTGGTTGTCTTTTTTTACTGTGCAAGTGTTGGTGTGAATGTGTGGTAGATGTGTCGCACATAACTATGGTGTGCTTCTGGTTTAACTTGTATGTTGGTGAGATGGTTTGGACTGCGTGTTTGCATGTTGTGCATGGTAGTACGTACGTGTAAGCGTATGGTAGTGATTGTGCATCTGAAAGTGTGATACTATGTGTGGGTCTACATTCCCTGTCACACGGGAGCTTGTACTCTTGATGTGTGATGAAAGTGACTCCAAATCCCTTCTGTAAATATGTAGATGTGTATAAAATAAAGCTTTCAAAATAAATGTAAGAC

Function

NR:

description
probable RNA polymerase II nuclear localization protein SLC7A6OS

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021607033.2 True 1646 mRNA 0.49 5 58260503 58263649

Neighbor

gene id symbol gene type direction distance location
LOC110526235 LOC106586999 coding upstream 16926 58236260 ~ 58243577 (+)
LOC110526233 LOC106587142 coding upstream 24364 58228407 ~ 58236139 (+)
LOC110526234 LOC106587141 coding upstream 31564 58218513 ~ 58228939 (+)
LOC110526232 dhcr7 coding upstream 101921 58151840 ~ 58158582 (+)
fgf19 LOC106586997 coding upstream 316819 57941240 ~ 57943684 (+)
LOC110526933 LOC106562045 coding downstream 80496 58318920 ~ 58408967 (+)
LOC110526241 LOC106587148 coding downstream 190799 58454448 ~ 58505295 (+)
LOC110526245 LOC106587150 coding downstream 377005 58640654 ~ 58732690 (+)
LOC110526935 LOC106562040 coding downstream 550834 58814483 ~ 59000538 (+)
tshz3b tshz3 coding downstream 1079470 59343119 ~ 59376681 (+)
G526511 NA non-coding upstream 3669 58249053 ~ 58256834 (+)
G526609 NA non-coding upstream 49169 58211120 ~ 58211334 (+)
G526608 NA non-coding upstream 49699 58210523 ~ 58210804 (+)
G526607 NA non-coding upstream 50199 58210003 ~ 58210304 (+)
G526624 NA non-coding downstream 3619 58267268 ~ 58267483 (+)
G526625 NA non-coding downstream 4019 58267668 ~ 58267950 (+)
G526627 NA non-coding downstream 6980 58270629 ~ 58271477 (+)
G526639 NA non-coding downstream 21727 58285376 ~ 58285687 (+)
G526640 LOC106587145 non-coding downstream 22283 58285932 ~ 58287403 (+)
G526547 NA other upstream 147684 58110906 ~ 58112819 (+)
G525972 NA other upstream 442223 57817824 ~ 57818280 (+)
G525912 NA other upstream 550163 57703458 ~ 57710340 (+)
LOC110526214 LOC106587124 other upstream 618021 57639437 ~ 57642487 (+)
fbxo3 fbxo3 other upstream 632884 57621795 ~ 57635241 (+)
G526628 LOC106587143 other downstream 8430 58272079 ~ 58272836 (+)
G527450 NA other downstream 515074 58778723 ~ 58779017 (+)
G528653 NA other downstream 1508059 59771708 ~ 59772084 (+)
LOC110526282 LOC106561985 other downstream 3708087 61971487 ~ 61979527 (+)

Expression


Co-expression Network