tshz3b (tshz3)


Basic Information

Item Value
gene id tshz3b
gene name tshz3
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 59343119 ~ 59376681 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036980612.1
GTACCGTGTAAGGAAGCGCCTCTATCAAAGAAGAGCGGACCAGCTAGGGATCTCTGGGGCTAGAGAAGAACTCTTCAGAACCCCGAAATAAGCATGCCGCGGAGGAAACAGCAAGCGCCCCGGCGTGCAGCAGcGTATGCCCCTGAGGATGAGAAGGAGGCTGCCCTGCTCGATGAGGACCTGGAGGGGGAGGACTCTGCCGGGGAGGAGGAGCCTGCGGTCAAGTACATGTGCCAAGACAAGGACTTCCTTTTCAATGACCGGCCTGGTTTCCATGACTCCCCCGTGGCCGACTTCTCCGGCCATGAGTTGGACAATGAGTCTCACCTGAGTGAGTCCAGTGACCGCATGTCAGACTTTGAGAGTGCCTCTCTCAAAAACGAGGAGGAGGTCGTGAAGGTGCCCCTAACGTCCTTGTCGCCATCTTCCTCTGTCATGATGGCCACCACCACAGCTACAGCCATGGAGGATGGCGCCACCACCGGGCCAGACAGCCTGGAGCAGATGAAGGCCATCTACACCAGCTTCCTGACCAACTCTTACTGGTCGTCTCTGAACTTCAACCTCACCCAGCCGCCAGCGGTGGAGAAACCTCCACGTagccacagcagcagcagcagtagcagtagcagcagttgtggcAGCAATGGCAATGGTTACGACTGGCACCAGTCCGCTGTGGCCAAGACCCTCCAGCAGGTCTCTCAGAACCAGAACCGGCTCATCCACCCAGCAGCGGAGCAAAACAACCTATTCAGCACCGTGCAGCTCTACCGTCAGAGCACAAAGCTCTATGGCTCCATCTTCACAGGTGCTAGTAAGTTCCGCTGCAAGGACTGCAGCGCTGCCTATGACACGCTGGTGGGGCTGACTGTACACATGAATGAGACAGGCCACTACCGCGATGACAACCACGAGACGGACAGCGACGGCACCAAGCGCTGGTCCAAGCCACGCAAGCGATCCCTCCTGGAGATGGAAGGGAAAGAAGATGCTCAGAAGGTCCTGAAGTGTATGTACTGTGGACATTCCTTTGAGTCTCTGCAGGACCTCAGTGTCCACATGATTAAGACAAAACACTACCAGAAAGTGCCTCTGAAGGagccagtgactcctgtggcagcCAAGATCTTCTCCTCCGCCCGGAAGAGAGCCCCCATCGAGCTCGACCTCCCCAGCTCTCCAGACTCCAACGGGGGCACCCCCAAAACCTCCCTAAATGACCATAATGACCCCCTACAGAAGGCATCCAACCCCTACATCACCCCAAATAACCGTTACGGCCACCAGAATGGAGCCAGCTATGCATGGCAGTTCGAGTCCAGGAAGTCCCAGATCCTGAAATGCATGGAATGTGGCAGCTCCCACGATACACTTCAGGAGCTTACAGCACATATGATGGTGACCGGTCACTTCATCAAGGTCACAAACTCTGCCATTAAGAAAGGCAAGCCCATCATGGAGTCTCCCCCACCGCCCGTCCCCACCATCTCTGCCGGTGAGGAGAAATTCCAGTCTGTACCACTGGCAGCCACAGCATTCTCCCCGCCTCCTCCACCCATACCTCCTCCCTCTAGTGTTTCCCCTGCCATGGCTGTGGAGAttaagaaggaggagaaggaagaggaatgTATGCAGGAAACCACTAACAGCAGCAAAGACAAGAAGACCGGAGATGACGAGACAGAGGAGAAATTTGATATCTCCTCCAAATACTCTTACTTAACAGAGGAGGATCTAGAGGAGAGCCCCAAGGGAGGGTTTGACATCCTCAAgtccttggagaacacagtgaCATCAGCCATCAACAAAGCACAGAACGGTGCTCCCAGCTGGGGAGGCTACCCCAGCATCCATGCTGCATACCAGCTCCCAAACATCATGAAGCTTTCACTGGCCAACTCAGGGAAGAGCTCAGCTCTGAAGTACATGTTCCCCGGAGGAGAGATCCTGTCCCAAAACGCCAAAAACCAACCTCTGATCTCCCCGCCCAGCCGtcagacctctcctctccccaaaaACAACTTCCACGCCATGGAGGAGCTGGTGAAGAAGGTGACTGAGAAAGTAGCCAAGGTGGAGGAGAAGATGCGGGAGCCGAATGTAAGGGCGTCCCCACTGAGACGAACCACACCCTCCCCCTGCAGCAGCGAGGCCGGGGAGTCAGCCAGAGGGGAGTCCcctaaagagaggagagggtctaAAACCCCAGAGAGCATCGGAGGAGGCAGCCACAAAGACTGTAACGGTGACACCAATATGAAGGAGTCGCTGGAGAATGGAATGGAGTCGGCTGTCAAATCCCCCATCTCTGCCTTGTGTGGCAGCACAGCCATTATTACAGACCACCCGCCAGAGCAGCCCTTCGTCAACCCTCTAAGTGCGCTTCAGTCCGTGATGAACGTTCACCTGGGTAAGGCAGCCAAGCCTGCTCTGCCGTCCCTGGACCCCATGAGCATGCTCTTCAAGATGAGCAACAGCCTGGCAGAGAAGGCCGCGGTCGCCGCTTCCACCCCAGCTCCGACCAAAAAAAACAACGAGCACTTAGACCGCTACTTCTACCACGTCAACAACGACCAGCCAATAGACCTGACCAAAGGCAAGAATGAAAAGAGTAGCTCCCTGGGTTCAGCTGCCCTGTCGTCATCCACATCAacaccctcctctgtctccccctcctccacagCCACCATGGCCAAGGCCTCATCTGCTGTGGCTTCATTCATGTCCAACTCCCCGCTGCGTGAGAATGCCCTGTCTGACATATCAGACATGCTGAGAAACCTGACAGAGAGTCAAGCCTCTAAGTCCTCCACGCCCACCAGCCTGTCGGAAAGGTCTGACATCGAGGGTTCCACTCAAGAGGAGCTAGAGGAGATCTCTCCAGCCCAGAAACGCAAGGGCCGGCAGTCCAACTGGAACCCCCAGCACCTGCACATCCTACAGGCCCAGTTCGCTGCCAGCCTCCGGCAGACTGGCGATGGGAAGTACGTGATGTCAGACCTGAGCCCCCAGGAGAGGATGCACATCTCCCGTTTCACAGGCCTCTCCATGACGACCATCAGCCACTGGCTGGCCAACGTCAAGTACCAGCTGAGGAGAACCGGAGGGACGAAGTTCTTAAAGAACCTGGACTCAGGCCACCCAGTGTTCTTCTGCAGCGATTGTGCTTCTCAGATCCGTTCCCCCTCCACCTACGTCAGCCACTTGGAGTCTCACCTGGGCTTCAGACTCCGAGACCTGGCCAAACTGTCTGGAGAGCAGCTTGTCAGCCAGATCTCACGTCACACCAAAAGCCTGTCCGAAAAACTGCTCTCCAACCACTCCAACTCTCACTCCCACGCCCACTCCCCGTCTCCTTCCCCTGACGAGGACGGCAGCAGCACCTCGTATCAGTGCAAGCTCTGCAACCGGACTTTTGCAAGCAAGCACGCAGTCAAGCTCCACCTGAGCAAGACCCATGGGAAATCCCCAGAGGACCACCTTATGTATGTCTGTGAGCTTGAGAAACAGTAGCACTAAGCTGTGGACatgctgcactctctctctctctctctcccgttctctcttgGTCTATCTTTAGCCTTTCACAGACATTTCTTTTGAAAAAAGGACTAGAAACTATTAAGTGATGAAACTGCACAAAGATGCCATAGAACTACTGTTTAGTTTCGGCACATGGTTTCTGATTATCTTTAAGGTCGACTCACTCTGGCCCAAGAAGCTTTTGTTTGTTTATGCTCTCCTTTTTGCTGTTGTCACTGATGAAACATATGAAGGTTAAACAATATTTTAAAATGAAGTGGTATGTATTTGAAAGTTGtgtaaattggatttgatttctttatattttggcaTCATTGAGATGCGATAAGCTGCATGCATAAATTAAACAGTTTAGTTAAACATTTGGTAACTAAATCTGGtgcacttttcttttttttctctctctctctttcgctctctttttgTTAATGTGACCTTTATGTGCTGGTGTCAGTCAGCATCTGAAATTTAACCCTCTGAGTACGGCCAAGCACTTCTACCCGAATGATCCAAAACCCTTATCAAAGCAAAACATTTGAGATTGGAATTGACCAAGCTATTGTGTCGTTTGTAAGCTGCACAGTGAAAGCACTACATGTCCCTGTCCAACAGCCAATCTCTAAAGATGCATTGTACGCGATGCAAAATCTCAATCTGAAGTCGTTTACTTTGTTTAATCAGGGGCCTCTATGAATTCAGGTCTatgtaaaaatgtatataaaaacatatatacTAATTCCTGTCTAAATTATGcatcatttttatatttttaatttaaGAGGAGTATGACTATCTACTGGTGCACAATATATGAAGACATTAATGAAATTGTTTTGCACAATAGTTTTATAAATATGTTATTTAATCAAATGATATGAAAATAAGAGGAACAAAATTACCCAGAACTCTTTTATTTCCACCTCGTGCTCAAAGGGTTAAACCTCTAGTACAAGACAGTACATGTGCCGGTATTTGAACGTAAAAATATAAAGGTTGTACAAAAGATGTTACTGTAAGAAGTAATGAAGAATTCCACATGTAACCTCTTATTTATAAGCACTCTTGGTTGTCGTTTCATATCGTAGAATGCCTTTGGATTGGTATTTTCTGTCTAATTACTCTCCCACAATTCCGCACTGCAGCTTTATCTTTTTGGGATATGAAAGGTAACCATGGTTACCTCACCTCTGATTGACAGTTCTGCTACATTTTTGGCAGTTAATTTGCTAAAGTAACTGACAGCTGCCAGTGTACAGAAATCTTAGGTGTAAAATATTGGCATGTAAACAGCACAGACACTGTTATGCATTCTGTGccgtgtttttttgttgttgttgttgacaatgAAGCACCCATTATATGACTTCATATAACCTTTTTTTTCTACTGCAGCATTAAAGGAAACAGTTTTTTGCAATAACA

Function

symbol description
tshz3 Enables chromatin binding activity. Involved in negative regulation of transcription, DNA-templated. Located in nucleoplasm and plasma membrane.

NR:

description
teashirt homolog 3

GO: NA

KEGG:

id description
K09236 TSHZ; teashirt

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036980612.1 True 4968 mRNA 0.50 2 59343119 59376681

Neighbor

gene id symbol gene type direction distance location
LOC110526935 LOC106562040 coding upstream 342581 58814483 ~ 59000538 (+)
LOC110526245 LOC106587150 coding upstream 610429 58640654 ~ 58732690 (+)
LOC110526241 LOC106587148 coding upstream 837824 58454448 ~ 58505295 (+)
LOC110526933 LOC106562045 coding upstream 934152 58318920 ~ 58408967 (+)
LOC110526238 LOC106587144 coding upstream 1079470 58260503 ~ 58263649 (+)
LOC118965037 NA coding downstream 466947 59843628 ~ 59847586 (+)
LOC110526256 LOC106562011 coding downstream 474481 59851162 ~ 59861646 (+)
LOC110526261 LOC106562006 coding downstream 790824 60167505 ~ 60175549 (+)
LOC100653452 LOC106587300 coding downstream 1053520 60430201 ~ 60432307 (+)
LOC110526265 NA coding downstream 1071925 60448606 ~ 60452270 (+)
G527992 NA non-coding upstream 101575 59238313 ~ 59241544 (+)
G527963 NA non-coding upstream 139455 59203412 ~ 59203664 (+)
G527885 NA non-coding upstream 194978 59147934 ~ 59148141 (+)
G527599 NA non-coding upstream 333814 59008252 ~ 59009305 (+)
G527594 NA non-coding upstream 347414 58995374 ~ 58995705 (+)
G528215 NA non-coding downstream 34780 59411461 ~ 59411665 (+)
G528265 NA non-coding downstream 79796 59456477 ~ 59456973 (+)
G528274 NA non-coding downstream 84397 59461078 ~ 59461291 (+)
G528321 NA non-coding downstream 151677 59528358 ~ 59530867 (+)
G528337 NA non-coding downstream 174323 59551004 ~ 59553757 (+)
G527450 NA other upstream 564102 58778723 ~ 58779017 (+)
G526628 LOC106587143 other upstream 1070283 58272079 ~ 58272836 (+)
G526547 NA other upstream 1230300 58110906 ~ 58112819 (+)
G525972 NA other upstream 1524839 57817824 ~ 57818280 (+)
G528653 NA other downstream 395027 59771708 ~ 59772084 (+)
LOC110526282 LOC106561985 other downstream 2595055 61971487 ~ 61979527 (+)
G531406 NA other downstream 2773092 62149773 ~ 62152218 (+)
G532259 NA other downstream 3443739 62820420 ~ 62822616 (+)
LOC110526311 LOC106587159 other downstream 3635577 63005672 ~ 63068991 (+)

Expression


Co-expression Network