LOC110526256 (LOC106562011)


Basic Information

Item Value
gene id LOC110526256
gene name LOC106562011
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 59851162 ~ 59861646 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021607061.2
TTAACAGGATGTGGGCTTGTCCTAAACGAATGTCCCGTCATTCACCGCGGtcctatttgttttttttttataccacCGCTCATTATACACAAACAGTTACACATCATCAAAGTGCGAGATCTGACGGGAGAGAAGCTACAATGTCTCCACGTATGGATGATGTCATGCAACTATGCTGTGACCTGTCTGCAAATCAGCAGATAAAAGCAGCAGTGAAGAATTCTGGGAAAGGATCAGCAGTGGCAGGAGGGACTGCATTTTTAGGAGGTCTTCTAGGTGGTCCCCCAGGGATTGCTGTTGGTGGTGCAGTAGGTGGCCTGTTGGGATGGTGGATGACCAGTGGACAGTTCAGACCTCTCCCTCAGATAATCATGGAGCTGCCTCCCCACCAGCAGCAGAGGCTCTATGCTGATATCATGGCCGTTTTGGGCTCACTGGACTGGACAGACCTGGCCCAGCTGACCGCTCTGGTCATAGGGAATGCTACTCTCCAGCAGCAGGTCACTGCTGCCCTACTCAGTTATATCACAAAGGAACTGAGAGCAGAGGTGAGATATGGGGACTGATCTACACAGACTGAATATCTGGAGGAACTTAAAACACACATTTGCTGCCTTTTGAAAGAAACAACTTTTTGTACTCAAATTCAACTCCAGCTTATTTTTGGAGACTGAAATAACCTTCACTGGAAGAGGCCTTATGGAGTTAATACATTGAGGCTCATGTCAGACCTGTCATGTCACCCAATATCTGATCATATCCTTTGATAAAGCACCTAATGGACAATTCCATCACTTTTTCACGTGATTTTCATTATCTCCAGAccaataccagtgtctacatatgtgaacATGGCACATTTCTACGTTTTGCAGAAACAAATATGAAGTCAAAAGTTCTACCCAATGACATCATCCAAAGTTAGAACATATttaaaaacagtgattttcaaacacttTGAGACTCGCAGTGACGTGAGGAGCAAGAAAATACCCTCTGGCTAGAAACTTTTTTTGAAAATCACGGTTTTGTTACTTTTACTCCTAGCCTGTTatgtcacagagaagcattttttttatgacctttcttatttttttaaccaCAGATCCTAAAAACACGCTGTTTTTACATACTGCATGTAGACACTAGTATGGCGCTGGAGATGATGAATGTGAGGTggaaaagtggtggaattgccctttaatgtacacatttgttttgttttagatGAGAGCGTTTTACCTCTGAATGTAGTGGTATGATTGAAACTTCTCTTGTAAGAACAGTCCAGCAGTTAATCAATATGGTGCACTTTATTTGTACTGTAGGGCATCATTTGTTGCCAATATTCTGCACTGAAATGTACACGTTGAATATTGTTGTGCATTTATAATTTACATTTATTTGCAACAAAGACAATGACAAAATAACCCTGATCACTCCTCTTGTAAGTGTGCCTGGGATCTCAAGCGACTCATGCGTTGTGAACATGGTAAGAGATGAGTACTTCTGAGAAACCGGCCTTGATACTTCTGGCGCATAATGGTGATAAGTCCCACCTAGTCCTAGAATTAACTAATTGGGAAAATCTTGGACACTTTTTGTAATGCTCTGTACTGAAGTGTTTATATGAAAATCATGATAAATTAAGTAAAGGTCAAAGATGACTTGTATGATCACCACAAGCTTTTAGTATGACATCATTAAGCCAGAAAACATGTTGTTTCAGTGAATCAACTGACAGTTTCGTAAAGGGAAATTCAACCACTTAACACGTTATTTGTAAGAAAAGGAAGACAATGCTACGCAATGTAATCTCTCCTGGACAGATGCATGCACGTAACAGAATGGTATCTCATCTGACGCAATTACGCAGTATTTTTGTTCTGGCTTTCTGAAATGGTACGCAATGTGACATAGTTCCTCTTTTTCAATGTTTCAAATGTAGACTTTTGAATAACACTAGAATCTTAAGGTATCAAAGCACTTTTTGAAGTATGTGCAAAGGTTGTTTGTCATGATGCCTCtgtgcatttttttattttcattttttttcctaGATGTTCCTTCCTTGTTCCTTCTTTGCAAGCAAATGTAGTCATGGAGGTTGTCATAACATCATACAGAGAAAGATAGATTATTAATCTCGAGGATAAATTTCTTAAGAAGTTATGTCATTCATTTCTGAGAGATGGTTGTTAGTCTTGTAGGAATGGCTTACTAATAAACAGTTTCATCGCAGCTTTTTCAAATTCCAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K23168 MPAN; protein MPAN

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021607061.2 True 2258 mRNA 0.40 3 59851162 59861646

Neighbor

gene id symbol gene type direction distance location
LOC118965037 NA coding upstream 3576 59843628 ~ 59847586 (+)
tshz3b tshz3 coding upstream 474481 59343119 ~ 59376681 (+)
LOC110526935 LOC106562040 coding upstream 850624 58814483 ~ 59000538 (+)
LOC110526245 LOC106587150 coding upstream 1118472 58640654 ~ 58732690 (+)
LOC110526241 LOC106587148 coding upstream 1345867 58454448 ~ 58505295 (+)
LOC110526261 LOC106562006 coding downstream 305859 60167505 ~ 60175549 (+)
LOC100653452 LOC106587300 coding downstream 568555 60430201 ~ 60432307 (+)
LOC110526265 NA coding downstream 586960 60448606 ~ 60452270 (+)
LOC110526268 LOC106587295 coding downstream 646313 60507959 ~ 60525243 (+)
LOC110526270 LOC106587291 coding downstream 810062 60671708 ~ 60752783 (+)
G528728 ccne1 non-coding upstream 6966 59842580 ~ 59844196 (+)
G528705 NA non-coding upstream 44424 59805938 ~ 59806738 (+)
G528673 NA non-coding upstream 65604 59785349 ~ 59785558 (+)
G528665 NA non-coding upstream 71710 59779229 ~ 59779452 (+)
G528663 NA non-coding upstream 72665 59778255 ~ 59778497 (+)
G528802 NA non-coding downstream 35147 59896793 ~ 59900613 (+)
G528986 NA non-coding downstream 172426 60034072 ~ 60034297 (+)
G529052 NA non-coding downstream 218523 60080169 ~ 60080372 (+)
G529500 NA non-coding downstream 543991 60405637 ~ 60405856 (+)
G529502 NA non-coding downstream 544576 60406222 ~ 60406430 (+)
G528653 NA other upstream 79078 59771708 ~ 59772084 (+)
G527450 NA other upstream 1072145 58778723 ~ 58779017 (+)
LOC110526933 LOC106562045 other upstream 1479194 58318920 ~ 58408967 (+)
G526628 LOC106587143 other upstream 1578326 58272079 ~ 58272836 (+)
G526547 NA other upstream 1738343 58110906 ~ 58112819 (+)
LOC110526282 LOC106561985 other downstream 2110090 61971487 ~ 61979527 (+)
G531406 NA other downstream 2288127 62149773 ~ 62152218 (+)
G532259 NA other downstream 2958774 62820420 ~ 62822616 (+)
LOC110526311 LOC106587159 other downstream 3150612 63005672 ~ 63068991 (+)
G532237 LOC106591742 other downstream 3171285 63032931 ~ 63198734 (+)

Expression


Co-expression Network