pop4 (pop4)


Basic Information

Item Value
gene id pop4
gene name pop4
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 59866451 ~ 59870055 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036980618.1
GAAAGCCTTCCACTGCAACTAGTCTCAGAGTGATAAGCAGGCGGAGATGTTCACAAATGGCTTTCTGAAGAACAGTTTACCGGGTATGAGCAAGAAGGAAATCGGCGACTTCATGCTTCACAAGGCTGTGGTTCTAAAGTATGCGAAAAaggagaagaaaaagaaaaacaaaaagaGAGCCAAGGGTCTCAATGCTaaacaaaggagagagatgaaggtcTTTCAGCTGAAACCAGAGCATCAAAAATATGAGCTTTTCTTGCCCTTGCATGAGCTATGGGAACAGTACATCAGAGATCTGTGCAACGGATTGAAACCAGAGAGCAACCCACAGACAATTCAGCAGAGGCTGTTGAAGGCTGATTTTCATGGTGCCATTCTTACAGTGGCCAGGTCCAAATGCCCCTCGTATGTAGGCACCACAGGAATCCTAGTGCAGGAGATGAAACATGTCTTCAAAATCATCACAAAGGAGGACAAACTGAAAGTCATACCGAAGCGAAACAGTGTGTTTGCTGTGGAGATCGATGGCTTTGTCTCCCATATCTACGGTAGCAAGTTTGAACTCCGCTCAAGCGAGCGATCCGCAAAGAAATTTAAAGTCAAAGGAACCATAGACCTGTGATCCTGTTGGAGTGTAGTAATGAGACTGAGCTCAAAGGACAGAGAAGTAAACAACTCCTGTCAGGATCTATAATAAGGACTATCACCATCttcaattcttattttcaagtcATACGGGAACCTCGGCTTCTGTTTTGGATGCAAGTCCTGTTCTATAGCATTTTATACTGTGGCAAAGACAGAAGACCTGACAAACTCAAAGCAATCAGAACATAGTTGTGATTAGAAAGCATTTGTGTTGGTATTTTCTTTTTTTGTAAACGTGTCCATTGATTGGTCAATGATTCAATTATTTTACAGAATTGTAAATACATTGATCTGTTTTGAGCAACACTACCTATGTCCACAAGGTGGCACTAAATCAATCTGCTTCAATGTATGTACAATAAACATATCTATCTCTATAAATTGTTGTCAAATGACAGATTACATTTCCTTGATCACCTAGTTTGAAGTAACACAATGAGTTACAATACAATGATACTACTATGTGGAAACTGAAAATATGCCTGTCTTTGGTATGCAAGATGCTTAATTTCCTGATAATTTGGGAATTTCCTAGTTGCTCAATTTTTTATGAGGTACCTGTTGTATATTGCTGGTTTGGATGTTGGTTTGTCAATTGAAGTGGCGTAGATACTAAACATTGCTGACCTGAAATTTTCATTTGGTAGTTGAGTTGCATTGACAAGTATATCTCTGTTGGCGTTTGGATTGCTCATATTTGTTTCTTAACCATGAGTGTGATTTTGTCAATTTTTTAATGCTATTACAATAATGACAACTGAGTAATTGaattgatatatatatttttaaatcaatttaatatacaaAGCATTTGCTGTCTGTTTTGTAAAATATTGTAACATTTTATTTCCCTCATTTCCCAGTAAAAAGCCTATCCCTGTTTTAAGTAGTGTGCTGATGCATGAGATATTTCGTTTTTTGGGCAGGTGGTGTGTATGAGACCGACTGGAAGGGAACCACTTAATGTCATCACTTCCTTCTTCACTGGGACTTCAAATATGATTTCTACTTTCTTTTCACAGGGTGTAAGGTCTTGGTCAAGAGGGCTGGTGAATCAGTCCGTGCAATGCAACACATGCGTCTATGACCTCATTTGATGCTGCAAAAAGCATACGTTTTTATTCAACCTTGTATGTGTAATATTCAAGTCCACTGTTTCTAGCATGCATGTGCTATGTTTATTTGTTCAGCCCTGGTGACTTGGCATTCCATGCTAAAGAATAGCCATACTGGGGCATATTGTGTTCcctcattaaaaaaaacacaggaTGCACATTAA
>XM_021607068.2
CGGaggggggtgctgcagcaccctcagcacccctacttcacGCGGCTATGACCGTAAGCGGtgcgtgttaatgttcagaccaaACATTAGGGTTCTTAGGGTTATTAGGGTTCAAAACACCCCCATACAGAAGACGCCTTCCtccaatgactcttatgtgtaatgtaatggaacaaatagtcatgatcaagggctaggTTTACGGTAGGAACGTCTCAATGAACCCATATAGCACTAGCCATAGCCTCTCGACGGCCTAAGTCAGTGTTACAGCTGTGCGCCTGCGTACGATAGTCCCATGTGTTGTGAATACATGCATTGTCAAAgttgagtgctagctagctattttaCAACTGGAGCTGTGGCTTCTACAGACATACTTGCGTACCAGttgaaatatggagaGACTCGTGCAGGCTAGCCTACCTCCTGATCAGGGACACATTCTGGGTATAGTGTCTCAGAGTGATAAGCAGGCGGAGATGTTCACAAATGGCTTTCTGAAGAACAGTTTACCGGGTATGAGCAAGAAGGAAATCGGCGACTTCATGCTTCACAAGGCTGTGGTTCTAAAGTATGCGAAAAaggagaagaaaaagaaaaacaaaaagaGAGCCAAGGGTCTCAATGCTaaacaaaggagagagatgaaggtcTTTCAGCTGAAACCAGAGCATCAAAAATATGAGCTTTTCTTGCCCTTGCATGAGCTATGGGAACAGTACATCAGAGATCTGTGCAACGGATTGAAACCAGAGAGCAACCCACAGACAATTCAGCAGAGGCTGTTGAAGGCTGATTTTCATGGTGCCATTCTTACAGTGGCCAGGTCCAAATGCCCCTCGTATGTAGGCACCACAGGAATCCTAGTGCAGGAGATGAAACATGTCTTCAAAATCATCACAAAGGAGGACAAACTGAAAGTCATACCGAAGCGAAACAGTGTGTTTGCTGTGGAGATCGATGGCTTTGTCTCCCATATCTACGGTAGCAAGTTTGAACTCCGCTCAAGCGAGCGATCCGCAAAGAAATTTAAAGTCAAAGGAACCATAGACCTGTGATCCTGTTGGAGTGTAGTAATGAGACTGAGCTCAAAGGACAGAGAAGTAAACAACTCCTGTCAGGATCTATAATAAGGACTATCACCATCttcaattcttattttcaagtcATACGGGAACCTCGGCTTCTGTTTTGGATGCAAGTCCTGTTCTATAGCATTTTATACTGTGGCAAAGACAGAAGACCTGACAAACTCAAAGCAATCAGAACATAGTTGTGATTAGAAAGCATTTGTGTTGGTATTTTCTTTTTTTGTAAACGTGTCCATTGATTGGTCAATGATTCAATTATTTTACAGAATTGTAAATACATTGATCTGTTTTGAGCAACACTACCTATGTCCACAAGGTGGCACTAAATCAATCTGCTTCAATGTATGTACAATAAACATATCTATCTCTATAAATTGTTGTCAAATGACAGATTACATTTCCTTGATCACCTAGTTTGAAGTAACACAATGAGTTACAATACAATGATACTACTATGTGGAAACTGAAAATATGCCTGTCTTTGGTATGCAAGATGCTTAATTTCCTGATAATTTGGGAATTTCCTAGTTGCTCAATTTTTTATGAGGTACCTGTTGTATATTGCTGGTTTGGATGTTGGTTTGTCAATTGAAGTGGCGTAGATACTAAACATTGCTGACCTGAAATTTTCATTTGGTAGTTGAGTTGCATTGACAAGTATATCTCTGTTGGCGTTTGGATTGCTCATATTTGTTTCTTAACCATGAGTGTGATTTTGTCAATTTTTTAATGCTATTACAATAATGACAACTGAGTAATTGaattgatatatatatttttaaatcaatttaatatacaaAGCATTTGCTGTCTGTTTTGTAAAATATTGTAACATTTTATTTCCCTCATTTCCCAGTAAAAAGCCTATCCCTGTTTTAAGTAGTGTGCTGATGCATGAGATATTTCGTTTTTTGGGCAGGTGGTGTGTATGAGACCGACTGGAAGGGAACCACTTAATGTCATCACTTCCTTCTTCACTGGGACTTCAAATATGATTTCTACTTTCTTTTCACAGGGTGTAAGGTCTTGGTCAAGAGGGCTGGTGAATCAGTCCGTGCAATGCAACACATGCGTCTATGACCTCATTTGATGCTGCAAAAAGCATACGTTTTTATTCAACCTTGTATGTGTAATATTCAAGTCCACTGTTTCTAGCATGCATGTGCTATGTTTATTTGTTCAGCCCTGGTGACTTGGCATTCCATGCTAAAGAATAGCCATACTGGGGCATATTGTGTTCcctcattaaaaaaaacacaggaTGCACATTAA

Function

symbol description
pop4 Predicted to enable ribonuclease P RNA binding activity. Predicted to be involved in rRNA processing. Predicted to act upstream of or within tRNA processing. Predicted to be located in nucleolus. Predicted to be part of ribonuclease MRP complex and ribonuclease P complex. Orthologous to human POP4 (POP4 homolog, ribonuclease P/MRP subunit).

NR:

description
ribonuclease P protein subunit p29

GO:

id name namespace
GO:0006364 rRNA processing biological_process
GO:0006379 mRNA cleavage biological_process
GO:0008033 tRNA processing biological_process
GO:0000172 ribonuclease MRP complex cellular_component
GO:0005655 nucleolar ribonuclease P complex cellular_component
GO:0004540 ribonuclease activity molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K03538 POP4, RPP29; ribonuclease P protein subunit POP4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036980618.1 False 1930 mRNA 0.39 6 59866451 59869316
XM_021607068.2 True 2366 mRNA 0.40 7 59866451 59870055

Neighbor

gene id symbol gene type direction distance location
LOC110526258 pkhf1 coding downstream 1962 59862772 ~ 59864489 (-)
si:ch211-260e23.9 LOC100194714 coding downstream 15550 59847636 ~ 59850901 (-)
ccne1 LOC106562012 coding downstream 22215 59839430 ~ 59844236 (-)
znf536 LOC106562015 coding downstream 168058 59507092 ~ 59698393 (-)
LOC118964913 NA coding downstream 524347 59316805 ~ 59342104 (-)
LOC110526936 vstm2b coding upstream 67342 59937397 ~ 59963943 (-)
LOC110526937 shcbp1 coding upstream 536673 60406728 ~ 60418521 (-)
LOC110526263 LOC106587298 coding upstream 562771 60432826 ~ 60448496 (-)
LOC110526266 LOC106587297 coding upstream 581376 60451431 ~ 60493519 (-)
LOC110526267 LOC106587296 coding upstream 628059 60498114 ~ 60503291 (-)
G528761 LOC106562011 non-coding downstream 4806 59859708 ~ 59861645 (-)
G528769 NA non-coding downstream 8281 59857934 ~ 59858170 (-)
G528768 NA non-coding downstream 8983 59857041 ~ 59857468 (-)
G528767 NA non-coding downstream 9734 59856418 ~ 59856717 (-)
G528766 NA non-coding downstream 10444 59855681 ~ 59856007 (-)
G528778 NA non-coding upstream 4021 59874076 ~ 59874298 (-)
G528836 NA non-coding upstream 11151 59881206 ~ 59917847 (-)
G528893 NA non-coding upstream 97990 59968045 ~ 59968290 (-)
G528913 NA non-coding upstream 110576 59980631 ~ 59980839 (-)
G529240 LOC106562006 non-coding upstream 297511 60167566 ~ 60175546 (-)
G527449 NA other downstream 1087984 58777782 ~ 58778467 (-)
G526903 NA other downstream 1607475 58258552 ~ 58258976 (-)
G526784 dhcr7 other downstream 1711535 58151850 ~ 58154916 (-)
G526752 NA other downstream 1884660 57981467 ~ 57981791 (-)
LOC110526302 LOC106562167 other upstream 2644068 62500665 ~ 62566214 (-)
G532766 NA other upstream 2952850 62822905 ~ 62855007 (-)
G532763 NA other upstream 2981641 62851696 ~ 62852817 (-)
LOC110526310 LOC106587159 other upstream 3115474 62985486 ~ 62991995 (-)
igdcc3 LOC106562146 other upstream 3953844 63823887 ~ 63944930 (-)

Expression


Co-expression Network