LOC110526261 (LOC106562006)


Basic Information

Item Value
gene id LOC110526261
gene name LOC106562006
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 60167505 ~ 60175549 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036980620.1
AACCTTTCTGATATACGTAATTTCGTCACCTGACGTGTTGCGTAATCAACCAGCGCTTGTTCCCCTTGCACAGTCTAGACAAGgtcgtagctagctagcattgcaAGGAGCCTCTCTCGCTAAAAAGATGATGTCCCTTGCCGCTCGTTCGGGGGTATTTTCTCCATACTTGCAGGCTACGAACTATGCAGTTGCTGGACCCCTCAAAGCCCTTATTCCAGGGGTGGTTGTAAAAGGAGAGAAAGTGTTGGTAGACACGAAGAAACCTTTCCTTACCCGCGAGTCCCTGAACGGTCAGAGTCCAAAGACTGGGCCTGCAGTATCAGTTAGCATAAATGCAAAAGCTGCAGTCCGATTCGCTCACACTGACATCAAGGTGCCAGATTTCTCTGATTACCGTCGGCCTGAGTTGCTTGACCCCAAGAAATCTTCTCAGGAGAGCAGCGAGTCCAGGAAAACCTTCTCCTACCTTGTCACCGGGGCCACAGCCGTGGTTGGTGTCTACACAGCCAAGACCGTGGCCACACAGTTTATCTCTTCCATGAGTGCCTCAGCTGATGTCCTGGCCATGTCCAAGATCGAGGTCAAGCTGGGAGAGATCCCAGAGGGCAAGAATATGACCTTCAAGTGGAGGGGCAAGCCTCTGTTCATCCGCCACCGGTCTGAGAAAGAGATCGCCGCCGAGGAAGCTGTGGATATGGCTGAGCTACGTGACCCCCAGCACGACAAGGACCGCGTCGCCAACCCAAAATGGATCATTGTTATTGGCGTGTGCACCCACCTGGGCTGTGTACCCATCGCCAATGCTGGTGACTATGGTGGATACTACTGCCCCTGCCATGGCTCTCACTACGATGCCTCTGGCCGTATCAGGAAAGGCCCAGCCCCACTCAACCTTGAGGTGCCCTTCTATGAGTTCCCAGATGAGGACACAGTAATTGTAGGCTAAATTTTTGGACTGAGATCACAGATCAGTGTGTTTCTGTCTGGCTCATTATTCCATCCATTAGCAGGCACAACCTCTGTTTCAGGGTGGCATAAATTATTGTAAGtaataaatgtacattttatcTGATTGAAAACCTCTCATGTTATTTATTTACCCAATCTCAGCTAAATCTTATATTGTACCAAAATACGACCTGGGTTGTAAATGAGTAGTGGGGTTTCTTTCGCCTTTCTTAACATGGAATAGCCTACTAACAATAATGATGTTTTAATAGTGCAGGTACAAGGGGATTGACCAAGACTTTGCTGCTCAATCAAAAACGTACACCTGCTTGCAGACAGTTGCCTACAATTGTGTCCGGAGGTGATTCTAAAGGGTTAATGTCATGAATGATGGCTTTACGTTCAGTTTCAGAGATATCCAAAATGGATATTGGATATTGTTGGGATGATTTAGAGTGCTAGGTTCAGTTGTTTAATGGCGATATTGATTTTCTAATCAATATCACTGTTTTGCTTTGGTGGTGGTCACACAGATTAACATTACACATTCTATACCAGAAAGAAAAGTGGTCAGTGGGTGCTGACAAGGGCATTGTTTAAATTGATGCTAATGCAACAGAACAGCCAGATTACACTTTTGTATTAATGAGCTATCCATCTGTATACAGAGTTATGTACAAATGCATGCTCATGTTAAGctaataaatgtttcacagaaaATCA

Function

NR:

description
PREDICTED: cytochrome b-c1 complex subunit Rieske, mitochondrial-like

GO: NA

KEGG:

id description
K00411 UQCRFS1, RIP1, petA; ubiquinol-cytochrome c reductase iron-sulfur subunit

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036980620.1 True 1674 mRNA 0.46 2 60167505 60175549

Neighbor

gene id symbol gene type direction distance location
LOC110526256 LOC106562011 coding upstream 305859 59851162 ~ 59861646 (+)
LOC118965037 NA coding upstream 319919 59843628 ~ 59847586 (+)
tshz3b tshz3 coding upstream 790824 59343119 ~ 59376681 (+)
LOC110526935 LOC106562040 coding upstream 1166967 58814483 ~ 59000538 (+)
LOC110526245 LOC106587150 coding upstream 1434815 58640654 ~ 58732690 (+)
LOC100653452 LOC106587300 coding downstream 254652 60430201 ~ 60432307 (+)
LOC110526265 NA coding downstream 273057 60448606 ~ 60452270 (+)
LOC110526268 LOC106587295 coding downstream 332410 60507959 ~ 60525243 (+)
LOC110526270 LOC106587291 coding downstream 496159 60671708 ~ 60752783 (+)
LOC110526274 LOC106561991 coding downstream 640034 60815583 ~ 60863460 (+)
G529052 NA non-coding upstream 87133 60080169 ~ 60080372 (+)
G528986 NA non-coding upstream 133208 60034072 ~ 60034297 (+)
G528802 NA non-coding upstream 266892 59896793 ~ 59900613 (+)
G528728 ccne1 non-coding upstream 323309 59842580 ~ 59844196 (+)
G528705 NA non-coding upstream 360767 59805938 ~ 59806738 (+)
G529500 NA non-coding downstream 230088 60405637 ~ 60405856 (+)
G529502 NA non-coding downstream 230673 60406222 ~ 60406430 (+)
G529504 NA non-coding downstream 231173 60406722 ~ 60407035 (+)
G529506 NA non-coding downstream 232140 60407689 ~ 60408096 (+)
G529523 NA non-coding downstream 245253 60420802 ~ 60421066 (+)
G528653 NA other upstream 395421 59771708 ~ 59772084 (+)
G527450 NA other upstream 1388488 58778723 ~ 58779017 (+)
LOC110526933 LOC106562045 other upstream 1795537 58318920 ~ 58408967 (+)
G526628 LOC106587143 other upstream 1894669 58272079 ~ 58272836 (+)
G526547 NA other upstream 2054686 58110906 ~ 58112819 (+)
LOC110526282 LOC106561985 other downstream 1796187 61971487 ~ 61979527 (+)
G531406 NA other downstream 1974224 62149773 ~ 62152218 (+)
G532259 NA other downstream 2644871 62820420 ~ 62822616 (+)
LOC110526311 LOC106587159 other downstream 2836709 63005672 ~ 63068991 (+)
G532237 LOC106591742 other downstream 2857382 63032931 ~ 63198734 (+)

Expression


Co-expression Network