LOC100653452 (LOC106587300)


Basic Information

Item Value
gene id LOC100653452
gene name LOC106587300
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 60430201 ~ 60432307 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021607074.2
AATGTCAGCTTAAACAACTTTACCATGCTATTGAAGTTGGCTGGTTAAGCTAATATAAAAATTAATAAAAGTAGGGACAATGCAACCCGAATCTTTATTACTGGGTGCTGGAACTTCCATGGCCGTCACTTCGCATTGGAAATCGAATGAGATGCTCAACTGGTCTGTGGTTACCCAGGGAAACGCCACGGCGCTTGGTGATATGGAGATGCCTGGGAACCCACGTTCGCAATATGGACAATTCTCTCCGTCTACCTCCGTGTTCTTGGCCGTGCTCATGACGCTTCTTGTCTTCGCCACTGTGCTCGGCAACGCGCTTGTAATATTAGCCTTTGCGGTGGAGAAAAGTTTGCAAACTCAAGGGAACTTTTTCTTTTTGAATTTGGCTATAGCCGATTTACTCGTTGGCGGCTTTTGTATTCCTGCGTATATCCCCTATGTCATTACCGGTGAGTGGCGACTCGGACGAGGTCTTTGCAAGATATGGCTGGTGGTGGACTATACTTTATGCACTGCATCAGTGTTCAACATCGCCCTGATCAGCTTCGACAGATTTATATCTGTCACACGAGCGGTGAGCTACAGGTGTCAAAAAGGTGTGACCCGGGAGGCTGTTCTGAAGATGCTGAGTGTGTGGCTGGCTGCTTTCCTACTCTATGGGCCAGCGATCATTATCTGGGAATACATCGCTGGTAGTAGCGTGGTGCCCGACAAACAGTGCCACGCAGAGTTTTACTTCAACTGGTATTTCTTGATGACAGCATCCACTGTTGAGTTTTTCACCCCCTTTGTTACTGTCATGTACTTCAACATCAGCATCTACATCAACATCAGGAGGCGGAACCAGGTGAGGGATGAGCAGCCTGTCGAGGGGCCTGGGGACTGTGAGATGGAGGCCCTGAAAGCTGGAGTTCAGCATGTATTCTTCGTCAGACCAGTGGAAGGTGAAGCCCAAAGGATCCCAGACAATGCTGCCAGGTTAGGAGGTATTCTATCTACTGCTAAAGTGTCAGCAGTAACTGGGAACAGCAACCATGAGACATGTAAGGACAGCACGATTCTGGACCTTCCTCCACTGCAAGTGGGTGATGTGGTTCAGCATTCCAGGAGGACGCGGTTCCAGTCAGCGGAGCACTCGTTCAGTAAACAGCGCAGCCAATCTGAAGTAGCTGCCAGTCGTTTTCGTCTCTCAAAGGACAAGAAGGTTGCCAAGTCCCTGgcagtgattgtgtgtgtatttggccTGTGCTGGGCTCCCTACACACTGTTAATGATCATTCGTGCAGCATGCCATGCCCAATGTGTCCAGCACTACCTGTATGAAATCTCCTTCTGGTTACTGTGGGTCAACTCCTCCATCAACCCTGTCCTTTACCCGCTGTGTCATACCAGCTTCAGAAAGGCTTTCAGAAAACTGCTTTGTACCACCAAGATTAAAATTCAGCCACAGTATATGGAACAAATGTATTAAGCATGACCAAATTGCACTGACAACTATGGCCTTGTTCTGACAGTTTTACATAATCAGTTGTCTCATGATGTTAGTGTAGGCGGACAGGTCATACGAGTGTTGCACTGGGTACAGACGGTCACCATgaatattgttttgtatttctgtgtagcATGTGCTTGTTTGCAGATCTTACAACGTGTATTAGTTACCTTTACAAATGTAATGTCTGTTTTATGTTGAACAATAAAAGACATGCAGC

Function

NR:

description
histamine H3 receptor

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0001505 regulation of neurotransmitter levels biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004969 histamine receptor activity molecular_function

KEGG:

id description
K04151 HRH3; histamine receptor H3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021607074.2 True 1712 mRNA 0.47 3 60430201 60432307

Neighbor

gene id symbol gene type direction distance location
LOC110526261 LOC106562006 coding upstream 254652 60167505 ~ 60175549 (+)
LOC110526256 LOC106562011 coding upstream 568555 59851162 ~ 59861646 (+)
LOC118965037 NA coding upstream 582615 59843628 ~ 59847586 (+)
tshz3b tshz3 coding upstream 1053520 59343119 ~ 59376681 (+)
LOC110526935 LOC106562040 coding upstream 1429663 58814483 ~ 59000538 (+)
LOC110526265 NA coding downstream 16299 60448606 ~ 60452270 (+)
LOC110526268 LOC106587295 coding downstream 75652 60507959 ~ 60525243 (+)
LOC110526270 LOC106587291 coding downstream 239401 60671708 ~ 60752783 (+)
LOC110526274 LOC106561991 coding downstream 383276 60815583 ~ 60863460 (+)
LOC110526277 LOC106587287 coding downstream 1453526 61885833 ~ 61902001 (+)
G529525 NA non-coding upstream 4373 60425506 ~ 60425828 (+)
G529523 NA non-coding upstream 9135 60420802 ~ 60421066 (+)
G529506 NA non-coding upstream 22105 60407689 ~ 60408096 (+)
G529504 NA non-coding upstream 23166 60406722 ~ 60407035 (+)
G529502 NA non-coding upstream 23771 60406222 ~ 60406430 (+)
G529528 LOC104954799 non-coding downstream 522 60432829 ~ 60435307 (+)
G529559 NA non-coding downstream 46384 60478691 ~ 60479017 (+)
G529561 NA non-coding downstream 49669 60481976 ~ 60482185 (+)
G529562 NA non-coding downstream 51955 60484262 ~ 60484462 (+)
G529570 NA non-coding downstream 59950 60492257 ~ 60492474 (+)
G528653 NA other upstream 658117 59771708 ~ 59772084 (+)
G527450 NA other upstream 1651184 58778723 ~ 58779017 (+)
LOC110526933 LOC106562045 other upstream 2058233 58318920 ~ 58408967 (+)
G526628 LOC106587143 other upstream 2157365 58272079 ~ 58272836 (+)
G526547 NA other upstream 2317382 58110906 ~ 58112819 (+)
LOC110526282 LOC106561985 other downstream 1539429 61971487 ~ 61979527 (+)
G531406 NA other downstream 1717466 62149773 ~ 62152218 (+)
G532259 NA other downstream 2388113 62820420 ~ 62822616 (+)
LOC110526311 LOC106587159 other downstream 2579951 63005672 ~ 63068991 (+)
G532237 LOC106591742 other downstream 2600624 63032931 ~ 63198734 (+)

Expression


Co-expression Network