LOC110526268 (LOC106587295)


Basic Information

Item Value
gene id LOC110526268
gene name LOC106587295
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 60507959 ~ 60525243 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021607080.2
acaacctaACAATTAAGAAACACATGTTCGATTAAATAAGCCTCGCGTCACAAACAAGCCATTCCATATTTTTGtagaccaaattcgacactcacTTTGATTTCCAAACTAACACTCCTCACTTGGTTATGGCGAAAAAAAACACAACTTCGCCACCTGCTGGAGAATACAGATTTCGCGCTCAGTTATCCCTCTAGCATCGCCTCTTCCTCATATACTATCGTTCTTCATTTTCAGCGGTCATTAATTTCTGTGCTTCTTCTAGCTAACCTTCTGAGATCATGCATCGACTTCAGCACTTGGCAAATAGATCATTGATTGCACGTGTTTTTAACCAGTCTCCAGCCCTTGTGCGGACAAAGGCTCGGGAAACCTCATGTTTAGTGCAGTCCATACGACTCAAAACACAAGGACCCGTTGAACAGTATGGACAGAAGAGATTCAGTACAGCGGAGGCAACCGTGGTTTTAAGAGAGAATGGCAAGATGCGAGAAAAGAGTCTGACCATGGACACCCTCAATCCGCAAGTGAAAGCGGTGGAGTACGCTGTGAGAGGACCCATTGTCACGAAGGCTGGTGACATCGAGAGAGGCTTGCAACAGgGTCAGAAACACCCCTTCACTGAGGTCATCAAAGCCAACATTGGAGATTCACATGCCATGGGGCAGAAGCCAATCACCTTTCTCCGTCAGGTGGTGGCTCTCTGCTCATTCCCAGAGCTGTTGGACAGCTCTATTTTCCCGGATGATGCCAAACAACGTGCCCGTCGCATTCTACAGGGCTGTGGGGGACAGAGCTTGGGGTCATACAGTGCCAGCCAGGGAGTGGACTGTATTCGGCAGGACATTGCTGTCTACATCGAGCAACGGGATAAGGGTGTGCCTGCCGACTGGGACAATATTTACCTCACCACCGGAGCTAGTGATGGCATCGTGAGCATCTTGAAGATGCTGGTGTCGGGCCAGGGCCGGTCCAGGAGTGGTGTGATGATCCCCATCCCTCAGTACCCCCTATACTCTGCAGCCATCTCTGAGATGGAGGCCGTTCAGATCAACTACTACCTGGACGAGGACAACTGCTGGGCCCTGGATATCAACGAGCTCCACAGAGCCTACCAGGCTGCCAAGGAGCACTGTCACCCCAGAGTCATCTGCATTATCAATCCAGGCAACCCTACCGGTCAAGTGCAGAGTAAGAAGTGCATCGAGGAAGTCCTCCACTTTGCCTACGAGGAGAATCTGTTTGTTATGTCCGATGAGgtgtATCAGGACAACGTGTACTCCCCAGACTGTCAGTTCCACTCCTTTAAGAAGGTGCTCTATGAGATGGGCCCTGAGTACTTCAACACTGTCGAGCTGGCCTCATTTCACTCCACCTCCAAAGGCTACTCAGGAGAGTGTGGGTTTAGAGGAGGCTATATGGAGGTTCTCAACCTCGACCTGGAGGTCAAGGCCCAGCTGGTGAAGCTGCTTTCTGTTCGACTGTGTCCCCCTGTCTCTGGACAGGCTGCCATGGATGTCATCGTCAACCCTCCTCTGCCACACGAACCCTCCTATCTCCAGTTCCACAAGGAGAAGAGTGCTGTGCTTGGAGCTCTGGCTGAGAAGGCCCAGATGACTGAGCAGATCCTCAACACGGTGCCTGGGATCAAATGTAACCCTGTGCAGGGAGCCATGTACGCCTTCCCACGCATCTTCATCCCCCCACGAGCTGTGGAGGAAGCCATGTCCCTGGGAATATCTCCTGACATGATGTACTGTCTGAGACTGCTTGAGGAGACTGGCATCTGCCTCGTTCCAGGCAGTGGCTTCGGCCAGAGGGAAGGGACGTATCACTTCAGAATGACCATTCTGCCCACGACAGAGAAGCTGAAGGTGCTCCTGGAGAAGCTCCGGGATTTCCACATCAAGTTTCTGAAGGAGTACGCGTCATTGGAGGAACCCAAGAGATGAGAGCACAGAGGATGACACACCGGACGCACTGAAACAGTTCAGATAGTCCCAGTTTGAGAATGTttaacacacaaacaaaaacagcaTTTACAGCGGTGTCGACTAACAATGTAAAGTAAAAAAGTAACCCCTTTTTACTCTACTAGTGTAACCTATGATTGCTTGAAGTTTTATCTGATTTTAGGAACAGTACTTGTTTGAGAGACATTTGTGCCTTTGTCAGACGAGGTAAAAGTGTGGGGAGAAACTATGCCGTCTGTACAGAgatgttaaaggggcaatctgcagttgctacatacattttagGACTTGTCAATTAAATTGCAGTTCAATGTAcaaattgattcttgaagaatacaacttataaatgcctcataagctgtcgtaccccatcagaacacaAATATAAgctttgtaaatgtaaacaacctATATAGCcttaacatggttaaaactgtaatattgatttcatggatgatcagtccttgcatccattgcTCTGGCTATGAATTTGGTTACaattctccagtcccatccctcagATTTTTATTGAAACTGGCAGTGAGGACGTTTTATTGTAactactgctgattgcccctttaacactAAAGCAATGTACATTGTGATGTACGCAAAGGTGCTCCATTATAGAGGATGCACTGGGGAATTATTTTCTAACACtccattttgttgtttttgtgccCGGGAAGTTATTTACACTGTTTTGTATTTTCTACCTGTCTTGAGGCTTTTCTGTCTCCTTAGAGGCATTTTGTGTTAGTGCTCTACACTGTGGGGCACCGTAAGTGCAAATATTATCTTAGAACCAGCTGTACATTTCCATGTGCCAAATGGAACTGGGGAACAGAGGTTGTTTCTGTAGGTCATGGACTCCGGACAATGAGTACTGCTACATCAGCTCTTTCTGGTCTGAAAAACAGCAGGGAGGGGATACTCCTCACCATTTATAACAACATCCTGTCTCTCCAAGTCATAAAGCTTTGAGCCTGCATAGCTCCCTGTTGGGCACATGTTTACCCATATAGTACCTGTCTAGCATGACACTGATCTGAGGTGTCAGATGCACTTGGAGAGTTTTTTTttcaaggggtgtgtgtgtgtgtgtgtcccgtaCTCTCTGCCTAGTTGCAGTATAATGTGCTTGTTATGGAAAGAAATGCAGTTGTTTGTGTGCTACTTTGAAATGAGCTTAAAGGTCAAACCAAGGGAAATGTAGGTTCTGATAATACTGTATATCGACATGTGCCCTTATTAGGCTATTTATTGCATAGATAGTTTACATTTTTACTGACAGTGGCTTTATGTCTTTCATTCACATTTATATCACACCCGAGAACGAGAAAGGGAGTACGGTGACATCTCAGACGATGGAGATGGTGGGTTGAATGCACTTCAGTGTTTTTGTTTGTAAAATGTTTTTGGGATCCTTCCGCCTGTGTCTCTTTCTGCACACTGCAAGCGGGAGGAAATGTCATTGTAAAGTGAAACACAGCATTTACACAGAAACACTTTACAATTTCCCTTTTTAGGTTGGAGATGAGCATAGTGACCCACACAAGGCAGTCTTAAAGCTTCAGTCCAGTGAATTCAGCCAGCCGATGAACTGTGGTTCTCTGATACCGTATCATCTCATCTCTATTTTTGTATGCAGTTTAATGCTGAATGAAGTGTTGAAGCATTAATGTAACCTCGGGAGCCATTCAATGTATGAAACTCTTGACTGACCTCAACATGAATTGTTTTTAACCATTTGACGGCAATGGGGTGCCTTCAATGGCAATGAGCTGTAATTTACATTGAGTGACTTTTGAGAATGTCAacaaatttaatatttttttattaatactatgacattttttaaaatgtgcaTTTTCTGCTAAATGTTTTCATTTGTGTGCCTGCTTTCTTTTCAACATTCTTTcttcatgagctgaaagtttactGGAAGAAGTTTTGGGTTCAACATCGATGTGCTTATAAATATCAAGTTTCTAACTGAAATAAGACTTAACCCTAGTTTTATCTTGTCATGTTTATGTTTTGgatattaataaataaataaaaaattcagATTTGGATTTCTTATTTTGTTATTTCTGTTGTGTTTTGTACAATAAATACTTTTGAGATCC

Function

NR:

description
alanine aminotransferase 2-like isoform X1

GO: NA

KEGG:

id description
K00814 GPT, ALT; alanine transaminase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021607080.2 True 4105 mRNA 0.45 11 60507959 60525243

Neighbor

gene id symbol gene type direction distance location
LOC110526265 NA coding upstream 55689 60448606 ~ 60452270 (+)
LOC100653452 LOC106587300 coding upstream 75652 60430201 ~ 60432307 (+)
LOC110526261 LOC106562006 coding upstream 332410 60167505 ~ 60175549 (+)
LOC110526256 LOC106562011 coding upstream 646313 59851162 ~ 59861646 (+)
LOC118965037 NA coding upstream 660373 59843628 ~ 59847586 (+)
LOC110526270 LOC106587291 coding downstream 146465 60671708 ~ 60752783 (+)
LOC110526274 LOC106561991 coding downstream 290340 60815583 ~ 60863460 (+)
LOC110526277 LOC106587287 coding downstream 1360590 61885833 ~ 61902001 (+)
LOC110526278 LOC106587286 coding downstream 1390476 61903571 ~ 61960273 (+)
LOC110526279 LOC106587285 coding downstream 1436143 61961386 ~ 61964415 (+)
G529576 NA non-coding upstream 3139 60501889 ~ 60504820 (+)
G529574 cssa11h16orf87 non-coding upstream 8775 60498147 ~ 60499184 (+)
G529575 NA non-coding upstream 9966 60497604 ~ 60497993 (+)
G529573 NA non-coding upstream 13818 60493942 ~ 60494141 (+)
G529571 NA non-coding upstream 14982 60492773 ~ 60492977 (+)
G529592 NA non-coding downstream 9650 60534893 ~ 60535096 (+)
G529537 NA non-coding downstream 15496 60540739 ~ 60540954 (+)
G529539 neto2 non-coding downstream 18486 60543729 ~ 60560821 (+)
G529675 NA non-coding downstream 191793 60717036 ~ 60718709 (+)
G529542 NA non-coding downstream 228029 60753272 ~ 60753484 (+)
G528653 NA other upstream 735875 59771708 ~ 59772084 (+)
G527450 NA other upstream 1728942 58778723 ~ 58779017 (+)
LOC110526933 LOC106562045 other upstream 2135991 58318920 ~ 58408967 (+)
G526628 LOC106587143 other upstream 2235123 58272079 ~ 58272836 (+)
G526547 NA other upstream 2395140 58110906 ~ 58112819 (+)
LOC110526282 LOC106561985 other downstream 1446493 61971487 ~ 61979527 (+)
G531406 NA other downstream 1624530 62149773 ~ 62152218 (+)
G532259 NA other downstream 2295177 62820420 ~ 62822616 (+)
LOC110526311 LOC106587159 other downstream 2487015 63005672 ~ 63068991 (+)
G532237 LOC106591742 other downstream 2507688 63032931 ~ 63198734 (+)

Expression


Co-expression Network