LOC110526278 (LOC106587286)


Basic Information

Item Value
gene id LOC110526278
gene name LOC106587286
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 61903571 ~ 61960273 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021607098.2
gttggatAACTGAGCGCTGCAAACGAGCTACTACGTTCGCAGCCATGGCGGGACATAGAAGATGCTCCTTGCTGCAGAGTGTTTGATTTGACGGCTTTTGAAGGCATTTGGTTTACATGCTCGATGGTTACACTGTGAATTTTAGAAAAAAATAGTATTATCGAGTATCTAACAGAAGTTTAATGAGTGATATACATGCTATTTTGGCCAGGTGGGCAACGTCTCCGGTCTACGGCACGCGTGTTTGAGTTGGAATTTGGACCAGGGAAGGTGTTCTAAGGGTTTTCACACCAGATATTATGTGGCACCGTAAGATATCGTAACCCTTTTAATCACGAGTTTTTCTTCGAATTAAACAAGTCATATTTCTGCTGGCATTGGGTAGGTAGGCTATCCGAAATCGAACGACAAGAAAACACCTGCATCACATGGGGATATTTTTACACCGGTCGGTGGCTCTAGCACTGCACACTCCCCTTGTCTGTGGCACCTCAAACGCCATTGAAGTTGTCAGGAACTACTCCAAAGCCTATGAGGACATCGCCCTTCTGTGCAGAAGAGAGGAGCTCAAGTTCGGCACCTGCCTCATTAACCGGCTGAAATGTTACTATAAGAAGGACTGTGGAAGGGAGTACATGTTGATGAAACTAATCTGCTCAGTGAGCTCGAACCAGAGCAGTGCCCATGAGTACCCAGACTGCCGTGATGGGGGCAGCGAGGCCAGCCTGCTGGTGTCTCCGCTGGTGGTGGCTGGCATCGTCATCGGCCTGGTGCTCTTCCTGTCCTGCGTTACCATCATCGTGGGCAGCCTGCGCAAAGACAGCCGTCTGCGCAACCCCCACCTGCGGGCCAGCTATGCTCCGGATGGCTTTTCGTACGGCGGCTCCATCGGGGAGCTGAGGTCGACGTGTGTCGAGGAGTTCCCTCCAGCGTTTGACTTTGACTCCTACGTGGAGACTCTATCACAAGTCAATGTGATGTATCCAGACTCCCCGCCTCACTATGATGAATGTGTCGGACCAGGTGCGACACAGATATACGTCCCCACAGACGACCCCCCTCCGTATTCCCTCACGGACCCCTGTCAGCGGTGCCACCAGCAGGCCACCTACACCAGCCTGGAGATGGAGGAGCCGTCTGCTGGAGCTGGAGCCTCTTGGGTGTCCGCCAGCAGCGCCGCCACCTCCCACTACCCAATCGGACTGCACGAGCTCAGGCAGCAGCCAAtatcctccatctccctgtcagCGTTCCCCCTGGAGGAAGCGCCCCCGTATGAGGTGGTGGTGAGCAGGCAGAACCAGCCCATCCCTCTGATGCCCATGGACCTGCTCAAACACCCATCAGAAGACAGCCATAGTCCCCAGAGAGCCCGGGCTGTCGCACACAGGATCCTGTAGAGCTGACTGGGCTAGTCCTCTCCAATGCTCTTTGTGcagacagcaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaaacacacacacacacacacacacacctcccagccTAACTCTCTTCAGCTTCTTCCAGTGTCCCTTTGTGCATGACAGGCAGTATCAAAAGAGAATTACTTTCTGGACCGAAGCTGAAAGTTTGGGTTGAACCTAAACTCAGTCTGCgccttcctctccttcttcctcttggATAAGCTGTGTCCCCAAACTCTAAGATGTTACCCGCACCACTCCTCACTCTATCTCCCTTTACTACTGGGGCACTGCCATGAAATCACAGGGCTACTACTGGTAAACTGGGGCTGGGGGAGTAATTGTCTTTCTGTCCAGAGGGAATTCACTTCATACTGTAAATTGGTCTCAGGTTAGGAGGCATTCAAGCATTTAGGAAGCATTATCAAAGTCTGTTTTTAGCACAAAAAACACTAGAGGTAACCTGAAGTGGTTTCACATAGATATTCTGTATGTACTGTTGGATTTTGTTATGTTGTAATGGAATTGCTCTTGATAAAAAACACAATAGAAAGAATGACTAATTTCACATTCCATCACATATCCATATGGTTTTATTAATATTTTCTATAtgaaaataatatttgatttataTTTAGCTGACTTTAGGACTCCCACAGTCTGTAAAATGTCCAGTAATTTCAACTGATAAATATACCCCAGTgttatacactcttagaaaaaaaggtgctatctagaacctaaacggttttttttggctgtccccataggagaaccatttgaataaccctttttggttccagg
>XM_021607099.2
gtaacctaacaaatgtggaaaaagtcaaggtatgtgaatactttccgaaggcactgtatgccaaCACATAAACAGCGTGTCGCAGTAGACTACTCTGCCAGATCTTCAAATCAACACACAATGCTCACTGTGGATTAAAAGATTAACATTGATTGTGATCAACACAAATATTTTATAACCTCAATTATGGCAGGAATTCCTCAGCAGggaagagatgaatagagactaATACGATTAGCATTTAGACAACGGCCTCCTCATAAATAAATTGATTAGATTTCTTGTCTCCTGTTGATGGCCCCCAAAAAGATTTTCAGATGCCAAATTTGGCAAAGATAACACGCAGCTTGTATTATCTCGGCCTGCACTTGGATATTGAATCTGTCTGTGTGACTATATGTGTGGTGTTATTTGAGTACATTTGATTTATGTTGTGTGCGCTTATTTTGGTTTCCCTCTAGTTCTGTTGAAAAGGGTGAAGGGGATTTGAGATGAGCCACTAATGGCTGAAGTTTCTGCCTCCTGAGCTGACATGAAAGAGTTCCACCCCGTGTATTTAAAAATTCTAACGGGTTGAGGATTAAATATTAAACACTGCAGACTTGAGAATCTATTCCTCCGCTGAGGAATGAAAATCTTGGGAGTGTTCCTGACCTGCGGTCCACAGAGAGTGAGCTCGAACCAGAGCAGTGCCCATGAGTACCCAGACTGCCGTGATGGGGGCAGCGAGGCCAGCCTGCTGGTGTCTCCGCTGGTGGTGGCTGGCATCGTCATCGGCCTGGTGCTCTTCCTGTCCTGCGTTACCATCATCGTGGGCAGCCTGCGCAAAGACAGCCGTCTGCGCAACCCCCACCTGCGGGCCAGCTATGCTCCGGATGGCTTTTCGTACGGCGGCTCCATCGGGGAGCTGAGGTCGACGTGTGTCGAGGAGTTCCCTCCAGCGTTTGACTTTGACTCCTACGTGGAGACTCTATCACAAGTCAATGTGATGTATCCAGACTCCCCGCCTCACTATGATGAATGTGTCGGACCAGGTGCGACACAGATATACGTCCCCACAGACGACCCCCCTCCGTATTCCCTCACGGACCCCTGTCAGCGGTGCCACCAGCAGGCCACCTACACCAGCCTGGAGATGGAGGAGCCGTCTGCTGGAGCTGGAGCCTCTTGGGTGTCCGCCAGCAGCGCCGCCACCTCCCACTACCCAATCGGACTGCACGAGCTCAGGCAGCAGCCAAtatcctccatctccctgtcagCGTTCCCCCTGGAGGAAGCGCCCCCGTATGAGGTGGTGGTGAGCAGGCAGAACCAGCCCATCCCTCTGATGCCCATGGACCTGCTCAAACACCCATCAGAAGACAGCCATAGTCCCCAGAGAGCCCGGGCTGTCGCACACAGGATCCTGTAGAGCTGACTGGGCTAGTCCTCTCCAATGCTCTTTGTGcagacagcaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaaacacacacacacacacacacacacctcccagccTAACTCTCTTCAGCTTCTTCCAGTGTCCCTTTGTGCATGACAGGCAGTATCAAAAGAGAATTACTTTCTGGACCGAAGCTGAAAGTTTGGGTTGAACCTAAACTCAGTCTGCgccttcctctccttcttcctcttggATAAGCTGTGTCCCCAAACTCTAAGATGTTACCCGCACCACTCCTCACTCTATCTCCCTTTACTACTGGGGCACTGCCATGAAATCACAGGGCTACTACTGGTAAACTGGGGCTGGGGGAGTAATTGTCTTTCTGTCCAGAGGGAATTCACTTCATACTGTAAATTGGTCTCAGGTTAGGAGGCATTCAAGCATTTAGGAAGCATTATCAAAGTCTGTTTTTAGCACAAAAAACACTAGAGGTAACCTGAAGTGGTTTCACATAGATATTCTGTATGTACTGTTGGATTTTGTTATGTTGTAATGGAATTGCTCTTGATAAAAAACACAATAGAAAGAATGACTAATTTCACATTCCATCACATATCCATATGGTTTTATTAATATTTTCTATAtgaaaataatatttgatttataTTTAGCTGACTTTAGGACTCCCACAGTCTGTAAAATGTCCAGTAATTTCAACTGATAAATATACCCCAGTgttatacactcttagaaaaaaaggtgctatctagaacctaaacggttttttttggctgtccccataggagaaccatttgaataaccctttttggttccagg
>TU601621
cacacacacacacacacacacacacacacacacacacacacaaacacacacacacacacacacctcccagccTAACTCTCTTCAGCTTCTTCCAGTGTCCCTTTGTGCATGACAGGCAGTATCAAAAGAGAATTACTTTCTGGACCGAAGCTGAAAGTTTGGGTTGAACCTAAACTCAGTCTGCgccttcctctccttcttcctcttggATAAGCTGTGTCCCCAAACTCTAAGATGTTACCCGCACCACTCCTCACTCTATCTCCCTTTACTACTGGGGCACTGCCATGAAATCACAGGGCTACTACTGGTAAACTGGGGCTGGGGGAGTAATTGTCTTTCTGTCCAGAGGGAATTCACTTCATACTGTAAATTGGTCTCAGGTTAGGAGGCATTCAAGCATTTAGGAAGCATTATCAAAGTCTGTTTTTAGCACAAAAAACACTAGAGGTAACCTGAAGTGGTTTCACATAGATATTCTGTATGTACTGTTGGATTTTGTTATGTTGTAATGGAATTGCTCTTGATAAAAAACACAATAGAAAGAATGACTAATTTCACATTCCATCACATATCCATATGGTTTTATTAATATTTTCTATAtgaaaataatatttgatttataTTTAGCTGACTTTAGGACTCCCACAGTCTGTAAAATGTCCAGTAATTTCAACTGATAAATATACCCCAGTgttatacactcttagaaaaaaaggtgctatctagaacctaaacggttttttttggctgtccccataggagaaccatttgaataaccctttttggttccaggtagaacacttttggttcCATGTCGGaccttttccacagagggttctacctggaacccaaaagggttctacctagaaccaagaAGGATTtgcctatggggacagccaaagaaaccttttggaacccttttttccaaGAGtggtattttttaaataaattatttttgTGGTATACGGTTTTATATGGTTTCTGGATATAAACACGTTTATATGAGCTGGAAATACTGTCTATTCTCCATAATTAGGTTTCCCCTCTGGGGGCTGAGGTCCATTTAGATCCCAACTGCTCTGTTTCAGTCTCCGAACGTGCACTGCCACacattcctcttctctctctcactcctcctcttTTTGTGGAGAGCTTTTTTGGGTGTTCACAAGTGAAATTACTATGAACGTGACCCATTCGCCAGCTAACATCAAAGTACAATATAGCTTGTAGCAGAGATACAATGGTATTTGACAATTGGTGGGAAGGAAAAATTATATTTGCACACAGTTTACTGTGATGAGGGATTTACTATACTTTAGTACTGACATCTTCGATATTATAATAAATAATCCATTTGTTTTTTCAAAATATTATCCAGCCTAAACACATTGTATTTTTCAATATGCTGGAATATTTTTAAGGCTTCCAAATTATTATTCAATATGTTGTTTTTGGTTGTGAGTATTCATTGTACAGATAAACTCTCTTCAGTTGAAATGTTTTTTACATGTCTGTCATCCATGTATAAATGGTATAAAAATGGCTGTGCCTGCCAAGCACTACGTCTAAGACTGTTAGACTGCTTAACATTGTAGCCACAATAACTTGCAACTGATTAACAAATCAAgagctttccttttccaaatagCTTGCTATTTTTCAAGGCTTGTGGTACTTTGTTGTTATTCAGATACGTCTATGTTCATCATTGAAACCCCAGAAAAAGCACACAGCGGAAAATGTGGCATAATGTCCATATTTTGTGTATACAACCGTATTTGTGGAGTCAGTTGGTATCTCTGTTCCAGCCAACTCTTTCTCATAGTCTCCCTCATTTATCTTACCAAATCCCTTATTGTGAAGTGAAATCCTCACTGATGAACCCTTAAAGAATATTTTATATATGACTTAGTCGCATGATTGCATTGCTGGCATTGTGGATAAAAGTTATAAAGAGATGAGTATTTATTTAGAATAGCTTTAACAATAATGTGTATAACTGTGGAAAGACTACTATTAAATAGTTGTTGTGAGATTCACCAGAATGTAGATGTACTACAGCACAGATGCTTCGCACTAGACAAAAATGTCTAAAGATTAAAGATCAACAGGTTATTTTTCTTGCGTTACATTCTTGCGCCAATCATCATCTAATGGATTTGACTTTGAGAGAGTTTGTTAAATGGCTTTTAAAACCAAATGCTGTTCTCGGCACTTGTTAATACATAGTCTATTTGTGGTCAGAATTGTCATGTCAAGCCCTATAAATAAAGCAATGTTTGGGCTAAAAATGATGTGTTAATAACTTGACAATGAGCATTTGTGCTTATTATTATGTAGCTACTGCAAATCTAGCGATGCTATACAATAATAATGATGGGCTTGTGTTTCACCAACTGAAATCTAAAAGTGCAATGCAGTGAATAGCACAACGTATTAGATTGTGTGCATtgtgacacacacagaggtatCTAGAAATGCAACTTTACCTGCCTTTACAAGTCAGTAGAAATGCTCTGTAACTGTGTTGGAAGACCTAGTCCAATACCTGTTGAGGTAAAACTGCAATGCGGTTCACTCTGGTCTTACATGCTGTTTTGTCTTTGTTGTTTACTTCCTTTTGGTAGCACAATAAGTACATGTTCAACataaatgtgaaataatgtgTAATACTGTACATGTACACTTCCAATGTATAGTTTCCCTATAAGTCCCACTGTTGTGCACAACTGTCCTGTGTGACAAAGATTCTTGTTTCCTATAATCACAGTCATCGACGTAAATCCATGTTTTGTATTAGAGCTTTTATTCATTTCTTATATTGGGGAAAGTAAATAAATTTGACCTCTATGAT

Function

NR:

description
guanine nucleotide exchange factor VAV3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021607098.2 False 2300 mRNA 0.49 6 61915719 61958209
XM_021607099.2 False 2311 mRNA 0.47 4 61941515 61958209
TU601621 True 2860 lncRNA 0.37 2 61903571 61960273

Neighbor

gene id symbol gene type direction distance location
LOC110526277 LOC106587287 coding upstream 13718 61885833 ~ 61902001 (+)
LOC110526274 LOC106561991 coding upstream 1052259 60815583 ~ 60863460 (+)
LOC110526270 LOC106587291 coding upstream 1162936 60671708 ~ 60752783 (+)
LOC110526268 LOC106587295 coding upstream 1390476 60507959 ~ 60525243 (+)
LOC110526265 NA coding upstream 1463449 60448606 ~ 60452270 (+)
LOC110526279 LOC106587285 coding downstream 3177 61961386 ~ 61964415 (+)
LOC110526282 LOC106561985 coding downstream 13278 61971487 ~ 61979527 (+)
LOC110526284 LOC106587278 coding downstream 67879 62026088 ~ 62032556 (+)
LOC110526286 ca7 coding downstream 113052 62071261 ~ 62084069 (+)
LOC110526289 LOC106587268 coding downstream 326161 62284370 ~ 62299748 (+)
G531252 NA non-coding upstream 19824 61895416 ~ 61895895 (+)
G531184 NA non-coding upstream 118184 61797329 ~ 61797535 (+)
G531180 NA non-coding upstream 122471 61792807 ~ 61793248 (+)
G531156 NA non-coding upstream 151386 61763969 ~ 61764333 (+)
G531155 NA non-coding upstream 151780 61763684 ~ 61763939 (+)
G531331 NA non-coding downstream 84131 62042340 ~ 62042547 (+)
G531332 NA non-coding downstream 84509 62042718 ~ 62042987 (+)
G531333 NA non-coding downstream 84938 62043147 ~ 62043433 (+)
G531334 NA non-coding downstream 86076 62044285 ~ 62044504 (+)
G531339 NA non-coding downstream 93361 62051570 ~ 62051804 (+)
G528653 NA other upstream 2143635 59771708 ~ 59772084 (+)
G527450 NA other upstream 3136702 58778723 ~ 58779017 (+)
LOC110526933 LOC106562045 other upstream 3543751 58318920 ~ 58408967 (+)
G526628 LOC106587143 other upstream 3642883 58272079 ~ 58272836 (+)
G526547 NA other upstream 3802900 58110906 ~ 58112819 (+)
G531406 NA other downstream 191564 62149773 ~ 62152218 (+)
G532259 NA other downstream 862211 62820420 ~ 62822616 (+)
LOC110526311 LOC106587159 other downstream 1054049 63005672 ~ 63068991 (+)
G532237 LOC106591742 other downstream 1074722 63032931 ~ 63198734 (+)

Expression


Co-expression Network