LOC110526284 (LOC106587278)


Basic Information

Item Value
gene id LOC110526284
gene name LOC106587278
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 62026088 ~ 62032556 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036980635.1
GCACAGTCCTAGATTGCACCTCAGGGAACGAGGAGGACTTTGGTGCAGCTTTCAGTCGCAAGATTCTTTCTATTATCAGTCCGTGCTCAGTCTTGCAAGGGAATACATCAGCTCCTCGACTCTCCTTGCCGTTTGGGTTTAAGGCAGAAATCCAGGAGACACCATGGGAGGCAAGCTGAGCAAGCGGAAGAAGGGGTACGATGTCAGCGACCCAAAGGACAAGAAGGAGGAGATTACTGTGGCTGCTGTGAGTGCCGTTGAGGCCGTGACCCATGTTGTGGAGAGCAAAGCACCAGCTCCGGTCGCTAAGTTGGCAGCGAAGACTGCTCCTAAAGTGTCTGCTGCGGTGGAGGGAGCAGTGGAGTCGACAGTGGTAGCCATCACAGAAGCGACAGAAGAGGCACTGTCAGCTATAGAGGCCGTGGCCAAGGGGGCCACCGCAGAGCCAGCGGCTGTACCAGATGAACCTGTGGCAGCACCGGCAGAACCAGCGCCAGCAGCAGAAGAACCAGCGACTTCAGAAGAACCAGCCACAGCACCAGAGGACCCAGCGCCAGCTGCAGCACCAGAAGAACCTGCAGCCTCAGGAGAGCCAGTGGATGCACCGGAAGAACCTGCAGCAGTAGCAGAGGAACCAGCCGCAGCACCAGAAGAACCTGCAGCCCCAGAAAAGCCAGTGGCGGCACCGGAAGAGCCTGCGCCAGCAGCAGAAGAACCGGTGGCTTCAAGAGAACCAGCTGCAGCACCAGAGGACCCAGCGCCAGCTGCAGCACCAGAAGAACCTGCAGCCTCAGAAGAGCCAGTGGATGCACCGGAAGAACCTGCAGCAGTAGCAGAGGAACCAGCCGCAGCACCAGAAGAACCTGCAGCCCCAGAAAAGCCAGTGGCGGCACCGGAAGAACCTGCGCCAGCAGCAGAAGAACCGGTGGCTTCAAGAGAACCAGCTGCAGCACCAGAGGACCCAGCGCCAGCTGCAGCACCAGAAGAACCTGCAGCCTCAGAAGAGCCAGTGGCAGCACCGGAAGAACCTGCAGCAGTAGCAGAGGAACCAGCCGCAGCTCCAGAAGAGCTTGCAGCTCCAGAAGAGCCCGTGGCAGCACCGGAAGAACCTGCAGCAGCTGAGGAACCAGCGGCATCACCAGAGGAACCTGCGGCAGCACCAGAGGAACCTGCGGCAGCAACAGATAAAACAGAGGCACCGGAAGAACCAGCGGCACTAAAGGAACCAGCGGCTGCACCAAAAGAGCCTGCAGTGGAAGAGCCTGTACCAGAAGAGCCTGTACCAGAAGAGCCTGCAACAGCACCAAAAGAACTTGCACCAGAAGAGCCTGCAGCAGCCCAAAAACAACCTGCACCAGAAGAGCCTGCAGTAGCACCAAAAGAGCCTGCAGTGGAAGAGCCTCCATCAGAAGAGCCTGCGGCAGCACCAAAAGAACCTGCACCAGAGGAGCCTGAGGCAGCACCAAAAGAGCCTGCACCAGAAGAGCCTGTGGCAGCCTCTGTGGAGCTAGCTGCAGCACCAGAAAATGCTTCTGAGGCTACAGAACAAGCCACAGAAGTGACAGCCGAGATTACAGACACTACAGAACCAGAGCCTGCCGCTCCAGAGCCTGAAACAGAGACTGTTACAGGGAAGGCCCCAGAAACTGAGGCTGTGGTCGAGGCACCAGTAGAGGCAGAAGCAGCTTCACCCGCCCCGGAGGAGGAGCCTGCATCAGTTGCAGAAGCCGTGTCAGAGTCAGCCACAGAGGCAGCCGCAGAGCCAGAGGCAGATTCCATCCCACAACCAGCCGCTGAAGAGCTCCCCCTACCTGTAGAAGAATCCGTAGCAGAGCTTGAATCTGAAGCTGCTGATGCAGTAACTGAAGCAGCAGAGCCAGATGCTGCCGACATCGCAGAACCCATCCCGGAGATCATCATTTCAGAATCTGCTGCACCTGCTGCTGCAGAGGAGGCCAGCGCTGAGCAAGAGGAGGCTGTGCTGGACAACAAGGAAGTTGTTTCCTCAGTGGAGGCTACTGCTGAGCCTTCTGCCCCTGAGGTCAATGGGGAGTGTCAGGAGCAGGCGGTCGAGCCGGCTGCCGTGTCTGCCCCGGAGCCACAGCAAAAGGAATGTGTCAATGGCATTGACAAGCCAGAGGATGCCGTTGAGGTGCAAAGTTACTGCGAATTAAAAAAGAACTTGAACCTGCCTGGCGACATCCAGATTCCTGAGGCAATCGGTGAGGCAATAAGTCAGGCTGTAGACTTGGTCTGAAGCTAATATAAATGTGATGTACCTAATGATCCGAAAAAACCTTCAACACAAGCTTCTGAAGATAAATATAAAAATGTCTGTTGTGGCAAACGAGTTTCCGATTAACCAAAAGGAAATACAACCACTCAAGtgtagagagggggagtgagataCATGTAGGAAGAGATGTGAGACATGGATGCAGTGTGCCCTACTGAGTCTTTGTGCCCCACATGTCATTGTAGAGGGGCGGCCTGTGTTTGCAGCATTTGTGGTGAGATGAAAGCCAGCGAAATTTGAGGGATGAGTATAGGAAAACAGGACAACAGAGCAAAGAAACGTGACATTGGAAATGTTGAATGGAATGAATAGTCTTGTCTTTGTGTGTGAGGCTGATGAatattaaaaatgttttttttttggaatAGTATCCAATAGTGATCTAATTTAGACATATCCTTTCCTTAACTATATGAAAAAATAATGGATGAAAAGTTTTGGCCTTTTATAGTGGTGCAAACATTGAGGAATGTTCATTGATGGCTTGGAGAATAAAAAAAGACTGTTATACCTGA

Function

NR:

description
proteoglycan 4-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036980635.1 True 2811 mRNA 0.54 2 62026088 62032556

Neighbor

gene id symbol gene type direction distance location
LOC110526282 LOC106561985 coding upstream 46563 61971487 ~ 61979527 (+)
LOC110526279 LOC106587285 coding upstream 61673 61961386 ~ 61964415 (+)
LOC110526278 LOC106587286 coding upstream 67879 61903571 ~ 61960273 (+)
LOC110526277 LOC106587287 coding upstream 124087 61885833 ~ 61902001 (+)
LOC110526274 LOC106561991 coding upstream 1162628 60815583 ~ 60863460 (+)
LOC110526286 ca7 coding downstream 38705 62071261 ~ 62084069 (+)
LOC110526289 LOC106587268 coding downstream 251814 62284370 ~ 62299748 (+)
LOC110526291 LOC106587268 coding downstream 295797 62328353 ~ 62346632 (+)
LOC110526293 LOC106587174 coding downstream 314211 62346767 ~ 62349795 (+)
LOC110526295 LOC106587266 coding downstream 345316 62377872 ~ 62386332 (+)
G531252 NA non-coding upstream 130193 61895416 ~ 61895895 (+)
G531184 NA non-coding upstream 228553 61797329 ~ 61797535 (+)
G531180 NA non-coding upstream 232840 61792807 ~ 61793248 (+)
G531156 NA non-coding upstream 261755 61763969 ~ 61764333 (+)
G531331 NA non-coding downstream 9784 62042340 ~ 62042547 (+)
G531332 NA non-coding downstream 10162 62042718 ~ 62042987 (+)
G531333 NA non-coding downstream 10591 62043147 ~ 62043433 (+)
G531334 NA non-coding downstream 11729 62044285 ~ 62044504 (+)
G531339 NA non-coding downstream 19014 62051570 ~ 62051804 (+)
G528653 NA other upstream 2254004 59771708 ~ 59772084 (+)
G527450 NA other upstream 3247071 58778723 ~ 58779017 (+)
LOC110526933 LOC106562045 other upstream 3654120 58318920 ~ 58408967 (+)
G526628 LOC106587143 other upstream 3753252 58272079 ~ 58272836 (+)
G531406 NA other downstream 117217 62149773 ~ 62152218 (+)
G532259 NA other downstream 787864 62820420 ~ 62822616 (+)
LOC110526311 LOC106587159 other downstream 979702 63005672 ~ 63068991 (+)
G532237 LOC106591742 other downstream 1000375 63032931 ~ 63198734 (+)
G532489 NA other downstream 1275977 63308533 ~ 63343755 (+)

Expression


Co-expression Network