LOC110526286 (ca7)


Basic Information

Item Value
gene id LOC110526286
gene name ca7
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 62071261 ~ 62084069 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021607114.2
CTGATCATCCTTCCCAACCTCCACTCCCAGTCTTCATCAACACTGCTCACACACCAGCACTTCATTTTCGGCACGCCATTTATCCCATCATTTCGTACCGTCTGGGCTGTGAGTCGAGAGTCAGTCAGCATATAGATAAGGTGAATCTAAGCGGAATCCTCGCAATGACAGGGCATCACTGGGGATACGGAGAGCAGGATGGTCCAGATGCATGGCACAAAGACTACCCCATCGCCCAGGGCAATCGCCAGTCTCCCATAGACATAGTTCCTGAGGACACTGTATACGATGCCAGCCTGCCTCCCATATTCGTCTCCTACGACCACTGCAACTCAATCAACATCTGCAACAACGGCCACTCTGTGACCGTAGAGTTTGATGACACCGATGACAAAACAGTACTCAGGGCAGGCCCCCTTGACAACGCCTACCGGCTGAAACAGTTCCACTTCCACTGGGGCGGGAAGGGCAGCCATGGCTCAGAGCACACTGTCGCAGGGAAGACCTACGCTTCAGAGCTACATCTGGTGCACTGGAACGCAGACAAGTACAAGACATTTGGGGAGGCAGCGGCAGCCCCCGATGGCCTGGCTGTCCTTGGCATCTTTTTAGAGATCGGAGATGAACACAGAGGTTTACACAAGCTAACAGATGCTTTATACATGGTGAAGTTTAAGGGAAGCGTTGCAGATTTCAAAGGTTTCAATCCAAAGTGCCTCCTACCTAACAGCCTCCACTTCTGGACATACCCGGGTTCCCTGACCACTCCCCCTCTTCACGAGAGTGTCACCTGGATCGTTCTGAAGGAGCCAATCATAGTCTCAGAGAAACAGATGGGAAAGTTCAGGATGCTGCTCTTCAacggagaagaggaagaggacaggaAACGCATGGAGAACAACTTCCGACCCCCTCAACCCCTGAAAGGCCGGAAGGTGCTAGCATCCTTTGACTAACTTGACTGCAAATAACCTCCTGGTAGCATAGCCTAACATATGGTCTATTATATGTCAGAGTGAATGTCTGAATAGACTTTCTTCTCAACCTTGAATAGTTTTACTACTGATGATGAATATAGAACAAGGGGTATGAAGCATCACATCTCCCTCTAATGGTCAATTACTTTCAACCGCACTTTAATTGAATGTCAAATGCAGATATCGACGTTTGAAACAGTCATAATGACTACTATGTGCCCTCTGCACAGTTCTCTATTTTTAAACATAGTAGTCATCTGTAACATTTTTCTGAAGTGAAAGATATTGCTCACACAGCCATCCAGACATTGCCTTGACAGAAAACAGTATAATGTATGTAACTCTAGTGAtttcttttatttttaaaaatctgattGTACCTTTTTCAAACAAACGTCAACGTGGCCTCATGGGTGTAGTGAAAAGCATTTAAGTCAATGAACAATCCCCCTCCACCCCAAACACACGCGCACAAACGTACACACACCATTTTCTGTCCACCCAGTGGATTGCTGTTGTTTAGGCTGCTATTGTTTCTATGCAAGGTGCTATATCTTCTTCCCAAGGGTTTAGCCACACCTTATCTAACAATGGAAGATGATGCCAGTGCTCTGTAACATGTTGTCTGAATCCTGACTGCCTCTTGGTGGTAATCTATGTTGATTCATATTTAGATGGGCTGGATCCACATCGTCCCACAGTAGTTGCCATAGATCCTTTAACCCAACACTCATAACTGGAGGTGGAATTGGATTTAAATTGCTGAACTGTAAATTAAGAGTTTACTCTGTACTTTCCCTGTGCCCTGACAGCCCAGTGATTGATGGAATGGCACTAGGGCACTCTCAGCTGTACATCAGCTTTAAAGATGCCAAGCATGCGCTGAATAGAGTATTGAGTTCATGTTGGGTCAAAACAGTTCCACTTTCGAGAAATGAAGGAGAGGgcgtacacacacagtacattctGTATGGAAATGGGACACTTCTGTAATGGGTTCATGTCCATGTCTTTGTGTGCTGCTCATTTCTCCTGTGCCACAGAACAGCCTCCTCCCTACAGTCGGTTCCTACACTACTGTATGGTACGTTGTTGCAGGCAGGGTGACGCTCCAGTTCTTTTACGATAATGGAAGGTCTCAGTAAGTGAAGGTCATAATGATTAATAGATCCCCACTGTAGCGACAGTTGTAAGAGACATTGCTCCTCGGTACACTATGTAATTCCTAATGAAAGTCTGCCAGGCCTCTGTGTGTTTGAGTAGTTTTACATAATGCTGTTCCATAGATAGAGGTGGGCGTTTACCCATATGGACAAACTGGTAGGGGGACACTCCTCTGCTTAGTCCCACCTATGGGAATTAAGCCTTGGAACTGGCACTTGAGCTATCTGTTTCAAACAATTGATATTGTTTTGTAAATTGTAGTTCTTCAATAATATTAGATTGATTCAGTACTGTTTCAGAAACAAAAGATGAGATTAAAGGAAATCTATCAAACGCTTTGTTGCCATTAAAATGCTTGTGTGGAGTATACAGATTACCTTTTTAAAAGTATGTTTATGACTAGTTCAAGTGTGGTTCCCAGAATTAGTCCTCACAATGGTGACTGCTGCAGTCTCTAAACATGAGTCACTGCTGCCACTGTGTAGTCTAACAGAGAGCTGGGAAGTAAGCGTTTGGAAACAGTTCCTAATGAGCCCCATGCAAGTACAAAATGCACTACAGTGGATTACTTTTAAACCCAACATGTATAGTTTTTGCCGTCCATTCCTGACTCAAACATTTCAATCAGTCCACTGAAATCAGTAAACACAACAGTTTACATGGTCACTGATTTTCTTGACAGCTATTGATGTGTGAGGAATTTCAGTATGCATTGAACCTTGATCCTGGTACAAAtgtacactacccttcaa

Function

symbol description
ca7 Predicted to enable hydro-lyase activity. Predicted to be involved in one-carbon metabolic process and regulation of intracellular pH. Is expressed in brain; musculature system; presumptive segmental plate; retina; and somite. Orthologous to human CA7 (carbonic anhydrase 7).

NR:

description
carbonic anhydrase 7-like isoform X2

GO:

id name namespace
GO:0006730 one-carbon metabolic process biological_process
GO:0008270 zinc ion binding molecular_function
GO:0004089 carbonate dehydratase activity molecular_function

KEGG:

id description
K01672 CA; carbonic anhydrase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021607114.2 True 2893 mRNA 0.44 7 62071261 62084069

Neighbor

gene id symbol gene type direction distance location
LOC110526284 LOC106587278 coding upstream 38705 62026088 ~ 62032556 (+)
LOC110526282 LOC106561985 coding upstream 91736 61971487 ~ 61979527 (+)
LOC110526279 LOC106587285 coding upstream 106846 61961386 ~ 61964415 (+)
LOC110526278 LOC106587286 coding upstream 113052 61903571 ~ 61960273 (+)
LOC110526277 LOC106587287 coding upstream 169260 61885833 ~ 61902001 (+)
LOC110526289 LOC106587268 coding downstream 200301 62284370 ~ 62299748 (+)
LOC110526291 LOC106587268 coding downstream 244284 62328353 ~ 62346632 (+)
LOC110526293 LOC106587174 coding downstream 262698 62346767 ~ 62349795 (+)
LOC110526295 LOC106587266 coding downstream 293803 62377872 ~ 62386332 (+)
LOC110526297 LOC106587264 coding downstream 376252 62460321 ~ 62464733 (+)
G531346 NA non-coding upstream 14114 62056916 ~ 62057147 (+)
G531345 NA non-coding upstream 14464 62056564 ~ 62056797 (+)
G531341 NA non-coding upstream 18053 62052998 ~ 62053208 (+)
G531340 NA non-coding upstream 19155 62051869 ~ 62052106 (+)
G531339 NA non-coding upstream 19457 62051570 ~ 62051804 (+)
G531410 NA non-coding downstream 76452 62160521 ~ 62183351 (+)
G531418 NA non-coding downstream 237452 62321521 ~ 62321951 (+)
G531510 NA non-coding downstream 417718 62501787 ~ 62506601 (+)
G531544 NA non-coding downstream 476794 62560863 ~ 62561065 (+)
G531511 NA non-coding downstream 480959 62565028 ~ 62565767 (+)
G528653 NA other upstream 2299177 59771708 ~ 59772084 (+)
G527450 NA other upstream 3292244 58778723 ~ 58779017 (+)
LOC110526933 LOC106562045 other upstream 3699293 58318920 ~ 58408967 (+)
G526628 LOC106587143 other upstream 3798425 58272079 ~ 58272836 (+)
G531406 NA other downstream 65704 62149773 ~ 62152218 (+)
G532259 NA other downstream 736351 62820420 ~ 62822616 (+)
LOC110526311 LOC106587159 other downstream 928189 63005672 ~ 63068991 (+)
G532237 LOC106591742 other downstream 948862 63032931 ~ 63198734 (+)
G532489 NA other downstream 1224464 63308533 ~ 63343755 (+)

Expression


Co-expression Network