LOC110526289 (LOC106587268)


Basic Information

Item Value
gene id LOC110526289
gene name LOC106587268
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 62284370 ~ 62299748 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005052183.1
AGAAAGAATAGATTTGAACGAGAGAGACGTTTCCCCTCTACTCGTAAACTGATTACTTTTTACCTCTTGGTGGAACGACTGTCCAGAAATTATTGAAAACAAATGGGGGCATTTTGGTTTGTGGAGCTGGGTGTATTAATATTATTTCTCCAGGCGTTCAAACCAGGGTTGTCGGAGGAGTCAAAATGTCTTCCAGGTTTCAATTCAGAAATGTACATTTTCAAAGTGGAAAGAAATCACTTACGAAGTGGCCGGAGTCTTGGAAAAGTGGTTTTTGATGACTGCACCATCCGTACCAGCTTTCTCTTTCACTCCGAGGATTCACGCTTCAAAGTAGATGGCGACGGGACGCTGAAACTGAAGAGGGGGCTGACTCTGCATAATGGACATAAGGAGTTCTATGTCTCTACCCATTCCAAGGGCAAGAAGTTCACGGTTCCAGTCAGAGTGCTGCATGAGGCCAGACATGGCCACCACCACAATCACCATGAGATGACCACCCAGCCCAAGCCAGGAGCAAGTCTGTCTCTACCTGTTCTGAACTTCCCTAAGTCTTCAGGAGGTCTGAAAAGAAGGAAGAGGGACTGGGTCATTCCTCCCATCAACTTCCCAGAGAATGCCCGAGGCCCGTTCCCCAAGAATATGGTGCAGATCAAGTCCAGCAATGATAAAGAGGTGAAGATCcagtacagcatcactggcaCTGGGGCAGACCTACCTCCTGTGGGACTCTTCACTGTGGACAAAAACTCTGGAATACTCTATGTGACCCAGCCTTTGGACAGGGAGAAAAAAGACCAATACATTCTCCTAGCCCATGCTGTTGCAGTGGGTGCAGGTATAGCTGAGGATCCCATGGAGATCATTGTGAAAGTCATCGATATGAATGACAACAAACCTGTATTTACACAAGATCCATTTACGGGAACAGTTCATGAGGCATCAAAACCAGGTGATGAGGTCATGCAGGTAACGGCCACTGATACTGATGAGGAGGGCTCTGCCAATTCTGATGTCAGATACACCATTCTCAGTCAGGAGCCTCCACTACCAAGCCCCAACATGTTTGTCATCAACCCTGTGACTGGAGGGATTCGGGTTAACGCACCTGGGTTGGACAGAGAGAAATTTACCAAATATACTTTGGCAATCCAAGCTGCCGATACGGAGGGAAATGGCCTTACCAGCTTTGGCAAAGCCATCATTACAGTAACGGACAGCAATGACAACGCGCCACAGTTTGTGACGCCTTCGTACACCGTGTCAGTCCCAGAGAATAAAGTGGATGCCTTGGTGGTGAAAATGCCAGTGACTGATGGAGATGAGCCTCACTCCTCTGCCTGGGCCACCACCTACAAGATAGTTGACGGGGACCCTCAAGGCCTTTTCAATGTGTGCACAGGCCCTAGCAAGCTGGAGGGCACCATTATGACACCTGGAGCAAGTCTGTCTCTACCTGTTCTGAACTTCCCCAAGTCTTCAGGAGGTCTGAAAAGAAGGAAGAGGGACTGGGTCATTCCTCCCATCAACTTCCCAGAGAATGCCCGAGGCCCGTTCCCCAAGAATATGGTGCAGATCAAGTCCAGCAATGATAAAGAGGTGAAGATCcagtacagcatcactggcaCTGGGGCAGACCTACCTCCTGTGGGACTCTTCACTGTGGACAAAAACTCTGGAATACTCTATGTGACCCAGACTTTGGACAGGGAGAAAAAAGACCAATACATTCTCCTAGCCCATGCTGTTGCAGTGGGTGCAGGTATAGCTGAGGTTCCCATGGAGATCATTGTGAAAGTCATCGATATGAATGACAACAAACCTGTATTTACACAAGATCCATTTACGGGAACAGTTCCTGAAGCATCAAAACCAGGTGATGAGGTCATGCAGGTAACGGCCACTGATGCTGATGAGGAGGACTCTGCCAATTCTGATGTCAGATACACCATTCTCAGTCAGGAGCCTCCACTACCAAGCCCCAACATGTTTGTCATCAACCCTGTGACTGGAGGGATTCGGGTTAACGCACCTGGGTTGGACAGAGAGAAAATTCCCAAATATACTTTGGCAATCCAAGCTGCCGATATGGAGGGAAATGGCCTTACCAGCTTTGGCAAAGCCATCATTACAGTAACGGACAGCAATGACAACCCTTCGTACACTGTGTCAGTCCCAGAGAATAAAGTGGATGTGACTGATGGAGATgatcctcactcctctccctgttccaccACCTACAAGATAGTTGACGGGGACACTCAAGGCCTTTTCAGTGGGAGCACAGGCCCTAGCAAGCTAGAGGGCATCATTACAACAGCTAAGCCGCTTGACTTTGAGAAGAAGAACAAGTACACTCTGCTGGTCACTGTGCAGAATGAAGTCCCATTCGCAATCAGCCTGCCCACCTCCACTGCTACTGTTGTAGTGAATGTGGAGGATGTGAATGAAGCTCCAGTCTTCACCCCAGTGGAGAAGATTATCAGGAAACCTGAGGACCTCCCTGTTGACAGTGACCTGGTTCTGTACACCGCCACAGACCCAGACACTGCAAGGAATCAGAAAGTCACATACAAGATACGCAATGATCCTGCTGGATGGCTAAATATCAACAAAGACACTGGGCTGATCAAAGTCAAGAGCCTCATGGACAGAGAATCCACTTTTGTCCAAGACAACAAATACTCTGTTGTTGTTCTGGGCATCGACAACGATGAAATCCCGGCAACTGGCACTGGTACCCTTATcatagagctggaggatgtgaATGATAATGCTCCAACCATCGACGAGAGTGTGATCAGGGTCTGCAACAAGGAGTCCTCCCCACAGCTGCTGTCAGTCACTGATAAAGACAGCACGGGCTTTGCTGCTCCATACACCGTACAGCTTCAGGGGTCGTCCCATTCTAGCTGGACTGCCAGAATGAACGACACAAAGACGGGCATTATCCTGACACTGAAGACTGTGTTGGACAGTGGAGATTACATGGTTGTCCTGAGAGTGTCTGACAACCAGGGCCTGCACCATGACAGCACCATCCAGGCCTCAGTGTGTGACTGCAAAGGAGCGGATGTTCAGTGCACCGATGAAGCTGCAACAGGCTTCGGCCTCTAGCAGTCTTACTACTCCTATTGTTGTCTCTTCTGCTGCTCATGTTCCTGCGGAAGAGAGGTGGTGAGAAGGAGCCTCAGGAGGACGATGTCATCTACTACTATGACgaggagggaggtggtgaggaTGACCAGGTGAAAGGGACTCACCAGACTAGCTCAGAACAAGCCCATTAGGTTCTCCCTATAAAGACTATCCTTAAGCATGACATTTATTTTACTGAAAGCCTAATCAGCCTTAGGATTTTTTTGTTAACTGAGATTAATTAACAAGCTCAATAATtgcttttaaaaatgtttgaTAAACATCTAAGTTTGGGTATTTTTTATTATAATCAAATTGTTTTTTCTTTCTTGCTTCTGAAGAGTGAATTATGTATAAAGGATATATCCCTTTAGTACAATGATGGACATGTGATGGGTTGTCATTTATTTAATAAAACTAACATTTATTCACTG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005052183.1 True 3572 mRNA 0.47 20 62284370 62299748

Neighbor

gene id symbol gene type direction distance location
LOC110526286 ca7 coding upstream 200301 62071261 ~ 62084069 (+)
LOC110526284 LOC106587278 coding upstream 251814 62026088 ~ 62032556 (+)
LOC110526282 LOC106561985 coding upstream 304845 61971487 ~ 61979527 (+)
LOC110526279 LOC106587285 coding upstream 319955 61961386 ~ 61964415 (+)
LOC110526278 LOC106587286 coding upstream 326161 61903571 ~ 61960273 (+)
LOC110526291 LOC106587268 coding downstream 28605 62328353 ~ 62346632 (+)
LOC110526293 LOC106587174 coding downstream 47019 62346767 ~ 62349795 (+)
LOC110526295 LOC106587266 coding downstream 78124 62377872 ~ 62386332 (+)
LOC110526297 LOC106587264 coding downstream 160573 62460321 ~ 62464733 (+)
LOC110526300 tpc2l coding downstream 190334 62490082 ~ 62491688 (+)
G531410 NA non-coding upstream 101019 62160521 ~ 62183351 (+)
G531346 NA non-coding upstream 227223 62056916 ~ 62057147 (+)
G531345 NA non-coding upstream 227573 62056564 ~ 62056797 (+)
G531341 NA non-coding upstream 231162 62052998 ~ 62053208 (+)
G531340 NA non-coding upstream 232264 62051869 ~ 62052106 (+)
G531418 NA non-coding downstream 21773 62321521 ~ 62321951 (+)
G531510 NA non-coding downstream 202039 62501787 ~ 62506601 (+)
G531544 NA non-coding downstream 261115 62560863 ~ 62561065 (+)
G531511 NA non-coding downstream 265280 62565028 ~ 62565767 (+)
G531551 NA non-coding downstream 273124 62572872 ~ 62573091 (+)
G531406 NA other upstream 132152 62149773 ~ 62152218 (+)
G528653 NA other upstream 2512286 59771708 ~ 59772084 (+)
G527450 NA other upstream 3505353 58778723 ~ 58779017 (+)
LOC110526933 LOC106562045 other upstream 3912402 58318920 ~ 58408967 (+)
G532259 NA other downstream 520672 62820420 ~ 62822616 (+)
LOC110526311 LOC106587159 other downstream 712510 63005672 ~ 63068991 (+)
G532237 LOC106591742 other downstream 733183 63032931 ~ 63198734 (+)
G532489 NA other downstream 1008785 63308533 ~ 63343755 (+)
LOC100750227 LOC106587244 other downstream 1038488 63338236 ~ 63549030 (+)

Expression


Co-expression Network