LOC110526291 (LOC106587268)


Basic Information

Item Value
gene id LOC110526291
gene name LOC106587268
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 62328353 ~ 62346632 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021607117.2
CATGCCCATACTTGGAGCGAGCGGATGGGCGAGGTCACTCCCCAGAAACTACCTGCTGAAGCTCATTTCTCACTTAACCGATAACCCAGAAAGCACACGTTTGAAGAATAGACTTTTCTCCTCTACACGTAAAGGGATTACTTTTTACTGTTGGTGGAACGACTATCCAAATATTATTGAAAACAAATGGGGGCATTTTGGTTCGTGGAGTTGGGCGTATTAATATTATTTCTCCAGGCTTTCAAACCAGGGTCGTCGGAGTCAAAATGTCTACCAGGTTTCAATCCAGAAATATACCTTTTCAAAGTGGAAAGATATCACTTACAAAGTGGCCGGAGACTAGGAAAAGTGGTTTTTGATGACTGCACCAGCCGTACCAGCTTTCTCTTTCACTCCGAGGATTCACGCTTCAAAGTAGATGGCGACGGGACGCTGAAACTGAAGAGGGGGCTGACTCTGCATAATGGACATAAGGAGTTCTATGTCTCTACCCATTCCAAGGGCAAGAAGTTCACGGTTCCAGTCAGAGTGCTGCATGAGGCCAGACATGGCCACCACCACAATCACCATGAGATGACCACCCAGCCCAAGCCAGAAAAAAGTCTGTCTCTACCTGTTCTGAACTTCCCCAAGTCTTCAGGAGGTCTGAAAAGAAGGAAGAGGGACTGGGTCATTCCTCCCATCAACTTCCCAGAGAATGCCCGAGGCCCGTTCCCCAAGAATATGGTGCAGATCAAGTCCAGCAATGATAAAGAGGTGAAGATCcagtacagcatcactggcaCTGGGGCAGACCTACCTCCTGTGGGACTCTTCACTGTGGACAAAAACTCTGGAATACTCTATGTGACCCAGCCTTTGGACAGGGAGAGAAAAGACCAATACATTCTCCTAGCCCATGCTGTTGCAGTGGGTGCAGGTATAGCTGAGGATCCCATGGAGATCATTGTGAAAGTCATCGATATGAATGACAACAAACCTGTATTTACCCAAGATCCATTTACAGGAACAGTTCCTGAAGCATCAAAACCAGGTGATGAGGTCATGCAGGTAACGGCCACTGATGCTGATGAGGAGGGCTCTGCCAATTCTGATGTCAGATACACCATTCTCAGTCAGGAGCCTCCACTACCAAGCCCCAACATGTTTGTCATCAACCCTGTGACTGGAGGGATTCGGGTTAACGCACCTGGGTTGGACAGAGAGAAATATACCAAATATACTTTGGCAATCCAAGCTGCCGATATGGAGGGAAATGGCCTTACCAGCTTTGGCAAAGCCATCATTACAGTAACGGACAGCAATGACAACGCGCCACAGTTTGTGACGCCTTCGTACACCGTGTCAGTCCCAGAGAATAAAGTGGATGCCTTGGTGGTGAAAATGCCAGTGACTGATGGAGATGAGCCTCACTCCTCTGCCTGGGCCACCACCTACAAGATAGTTGACGGGGACCCTCAAGGCCTTTTCAGTGTGAGCACAGGCCCTAGCAAGCTGGAGGGCATCATTACAACTGCTAAGCCGCTTGACTTTGAGAAGAACAACAAGTACACTCTGCTGGTCACTGTGCAGAATGAAGTCCCATTCGCAATCAGCCTGCCCACCTCCACTGCTACTGTTGTAGTGAATGTGGAGGATGTGAATGAAGCTCCAGTCTTCACCCCAGTGGAGAAGATTATCAGGAAACCTGAGGACCTCCCTGTTGACAGTGACCTGGTTCTGTACACCGCCACAGACCCAGACACTGCAAGGAATCAGAAAGTCACATACAAGATACGCAATGATCCTGCTGGATGGCTAAATATCAACAAAGACACTGGGCTGATCAAAGTCAAGAGCCTCATGGACAGAGAATCCACTTTTGTCCAAGACAACAAATACTCTGTTGTTGTTCTGGGCATCGACAACGATGAAATCCCGGCAACTGGCACTGGTACCCTTATcatagagctggaggatgtgaATGATAATGCTCCAACCATCGACGAGAGTGTGATCAGGGTCTGCAACAAGGAGTCCTCCCCACAGCTGCTGTCAGTCACTGATAAAGACAGCGCGGGCTTTGCTGCTCCATACACCGTACAGCTTCAGGGGTCGTCCCATTCTAACTGGACTGCCAGAATGAACGACACAAAGACGGGCATTATCCTGACACTGAAGACTGTGTTGGACAGTGGAGATTACATGGTTGTCCTGAGAGTGTCTGACAACCAGGGCCTGCACCATGACAGCACCATCCAGGCCTCCGTGTGTGACTGCAAAGGAGCAGATGTCCAGTGTACCGATAAAGCTGTAGCAGGCTTCGGCATCTCTAGCATTCTGGGAATTCTAGGAGCAGTCTTACTACTCCTATTGTTGTCTCTTCTGCTGCTCATGTTCCTGCGGAAGAGAGGTGGTGAGAAGAAGGAGCCTCTGCTGCAAGAGGACGATGTCAGGGACAACATCTACTACTATGACGAGGAGGGAGGTGGCGAGGATGACCAGGATTTCGACTTGAGTGTCCTGCACAGAGGTCTGGATAACCGTCCTGATGTTTTCCGTAATGACATCGCTCCAACCATGGCCCGGCCAGAGTATCGTCCACGACCCGCCAACCCAGCCGACATTGGCAACTTCATTGATGATAACCTGAAGGCAGCTGACAACGACCCCACTGCCCCTCCCTACGACTCCCTCCTGGTGTTTGACTATGAAGGAGGTGGCTCTGAGGCCGGCTCCCTCAGTTCCCTCAATTCCTCCAACTCAGGAGGCGACCAGGACTACGACCTCCTTCAAGAGTGGGGCCCGCGCTTCAAGAAGCTGTCTGACATGtacggaggaggagaggattgagGAGTCAGTCAGCCACTAAACCTTTTTGCTTGGAAACTGTCCGGTTCTCCACACTTGGGTCTGTAGACTGAGGTCATTTCTTTATTTCCCCTTTTTTATGCGTTTCGGGCACATCTACAGTTTGGCAATTTGATTTGTGCAGACATGGGACCATTTTAGAAAAATGTGTTCAATGCTCGTCTTCAGCATGGGGAGGGTGGCACACTTGGCTCTGCACTAGCAGGATGTTGACATGGATTTTACACAGTTCAGCAGTTCTTTCTAATGGACTCTTAACAACCCCAGATTGTACTTGAATTTAATATGCTTTGTTTGCTGTTTTTTGCTTCTATGTTGGCGTCGTATCGaagttattttttaaaaatggatatatatatatatatatatatatatatatatatctcacgaTCCTTTGGCATGAAATTGAAGTTACTGGAAGCCAAATGAGCCTTACGATTTTTTTTTGTTAGCATTTATTGAGCTTGATAATAAACTGTTAAGTTTGGATTGCTTTATTCCTTTTCATTTTAATCATATTAATCACtaagtgtattttttttttttttttcctgaagAAGCTCCGTTCTGCTTTTTTAAATTAAAGATATCCCTTTGGTACAATGATGGATGTTAATATTTGTATTAAATACATTGGAATTTGTCTTATTTTGAATTAAATTATTCAAATTCACAGCTGAGACACTAGATGGCGATGATTGAATAAAACAGGTCTTGGTCAATGAATGATGGCATTTCCTTGTCCCGCAGAACAGATTGTACAAGTTATAGTTAAGTAATAAGGCCGGAGGGGGTGTGGTGTATATGGTCAACATATctcggctaagggctgttcttatccacgATGCAACACGGGGTGCCTGGACAGAGCCTTTAGCCGTggtttattggccatataccacaaaaccCTCAGGTGCCTTAATGGTTACAAATGTAATTAGAgcaataaaaatgtatattttgtcatATCAgtccgtataccatgggtatcaGCCAATCTGCAGGGCTTGAACCATTTATAGGCTACCTTAGACATTTAGACTCATGCATGTGATTTTTTAAGGCACAATGTGCAATTTTAAACACATTTGTTTTGTCTTAGCCTTCAGGAGTAGGTGGTTGAGGTcattgtatttgtattattttccagTCATCTGTTCAAGCAAGTGAATTCTTGCGCACATCATAAATGAAAAGTTACGGTTGCTTTTAGTTGTCTACCCCACGGACCTCCCCTCCTTGAATGCTAGTTTGGTTGCCTCAATAGGATGCACTTCATGGAATAGAACATGAGTGGTCCAGGAATACGCTTTGCTTTCAAATGAGACATGGAAAGAAACTGAGAATAATAGACAAGGAACCTCTCACGTAACACTTCAAGTCTGTCTTTCTTTTCAA

Function

NR:

description
B-cadherin-like

GO: NA

KEGG:

id description
K05689 CDH1, CDHE, CD324; cadherin 1, type 1, E-cadherin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021607117.2 True 4248 mRNA 0.46 16 62328353 62346632

Neighbor

gene id symbol gene type direction distance location
LOC110526289 LOC106587268 coding upstream 28605 62284370 ~ 62299748 (+)
LOC110526286 ca7 coding upstream 244284 62071261 ~ 62084069 (+)
LOC110526284 LOC106587278 coding upstream 295797 62026088 ~ 62032556 (+)
LOC110526282 LOC106561985 coding upstream 348828 61971487 ~ 61979527 (+)
LOC110526279 LOC106587285 coding upstream 363938 61961386 ~ 61964415 (+)
LOC110526293 LOC106587174 coding downstream 135 62346767 ~ 62349795 (+)
LOC110526295 LOC106587266 coding downstream 31240 62377872 ~ 62386332 (+)
LOC110526297 LOC106587264 coding downstream 113689 62460321 ~ 62464733 (+)
LOC110526300 tpc2l coding downstream 143450 62490082 ~ 62491688 (+)
LOC118965084 NA coding downstream 221417 62568049 ~ 62569967 (+)
G531418 NA non-coding upstream 6402 62321521 ~ 62321951 (+)
G531410 NA non-coding upstream 145002 62160521 ~ 62183351 (+)
G531346 NA non-coding upstream 271206 62056916 ~ 62057147 (+)
G531345 NA non-coding upstream 271556 62056564 ~ 62056797 (+)
G531341 NA non-coding upstream 275145 62052998 ~ 62053208 (+)
G531510 NA non-coding downstream 155155 62501787 ~ 62506601 (+)
G531544 NA non-coding downstream 214231 62560863 ~ 62561065 (+)
G531511 NA non-coding downstream 218396 62565028 ~ 62565767 (+)
G531551 NA non-coding downstream 226240 62572872 ~ 62573091 (+)
G531553 NA non-coding downstream 228253 62574885 ~ 62575117 (+)
G531406 NA other upstream 176135 62149773 ~ 62152218 (+)
G528653 NA other upstream 2556269 59771708 ~ 59772084 (+)
G527450 NA other upstream 3549336 58778723 ~ 58779017 (+)
LOC110526933 LOC106562045 other upstream 3956385 58318920 ~ 58408967 (+)
G532259 NA other downstream 473788 62820420 ~ 62822616 (+)
LOC110526311 LOC106587159 other downstream 665626 63005672 ~ 63068991 (+)
G532237 LOC106591742 other downstream 686299 63032931 ~ 63198734 (+)
G532489 NA other downstream 961901 63308533 ~ 63343755 (+)
LOC100750227 LOC106587244 other downstream 991604 63338236 ~ 63549030 (+)

Expression


Co-expression Network