LOC110526293 (LOC106587174)


Basic Information

Item Value
gene id LOC110526293
gene name LOC106587174
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 62346767 ~ 62349795 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021607118.2
atttggcaTTTTTTGCTATACCATGTGATAGAAGGTTTGTAGCATAAAGAAAAACGAGTATAGAAAAAATAAATACCGGTTAGGCAATATTTTGAGTAATTATAAAGCCAACCAGGCAGGGCCAATTCAGGTCGCCTGTCTACAGGCTTGCAGACTACTGTGTTGCGATGCACCTGTTTTGTTGGGGTATACTGATCGACGCAGAGGTGCCGCCCCCATGCACTTGTCCTTTCATTCTAATTGGTCCGACAGGGTGTGTATGCTAATTCTCAGCGACCGCTGCACCTGACTCTCCACTCCACCGAAGAATGCAAGGCAAAAGACAGCCTCCAAGTAACAGCTATTTATTCTACAGGTCATCCTACTCAACGAGCACTCACTTGTTACATTATTGCGGCGCTGCAGACTCATCAATAACAGAGCTATATGATAAAGATGCCACGGTCTTTTCTGGTGAAGAAACATCTCACTAATAAGAAGCCAAACTATGGAATTCTGGATTCAAAATCAGACGCTCTCCACACCAGCCTGGTCTATCTTGAGGTACCCTGTTACATCCCCAGCACTCCTCAGCCCCTGGAGGGTTGGCTGCCAGGGCCAAGTCTCATCCCCACACCAGCCTCCATGCACTCTCCCAAGGTAGACAGGCTGCCTTCAAGGGACACCAGCTTGTCCCTGCATAGCTCAACACAGGAAATCACCTACCCCCTGTCAGTGTCTCACAACAATCCGCTAAGAGACTCACAGTCCGGATTTAAGTCCCTGGGAACCATGGAACCCCAGACCTTCATGCTCTCACAGGACTTCAGACAACCGGAGGAGAGGGGCAGCATGCCTAATCCCCTCCTGGGCCTTGTTCACTCTAGTGTTAGTCAGGAGCGCTTTGAATGCTTTGACTGTCACAAAGCCTACTTCACCTTCTCTGGGCTGGCTAAGCACAGGCAGTTGCACTGTGAGTGGCAGTGTCACAAGTACTTCTGCTGCAGGTACTGTGACAAGGAGTACGTGAGTCTGGGAGCTCTGAAGATGCACATccgaacacacacactgccctgcgTCTGCAAGCTCTGTGGGAAGGCCTTCTCCAGGCCTTGGCTGCTCCAGGGACACATTCGCACACATACAGGTGAGAAGCCCTTCTCCTGCCCACACTGCAGCCGGGCGTTTGCTGACCGCTCCAACCTCCGAGCACACCTACAGACACACTCTGACATCAAGAAATACCAGTGCAAGAGTTGCTCCAAAACCTTCTCCAGGATATCTCTGCTCTGCAAGCATGAAGAGGCTGGCTGCTCCCCACTGTCCTGATTCCGTTTACTGCCAGTGCTGCCCACTCTGTGCCTATTGCCTACTTGCCTAGACTATGTCTGGTTCTACTAACATCAGACTTCCCTCACAAAGCACTGGAGATAGACTACTATTGGTGACACGGAGCTCTGACTACTGTATGTTTTTGTTCTCTGACATTTCAAGCTCATGAAATAAGCACAATGGACTGTGTCCAAAGACATTCTTATGTCATATATTTGACATATGAAGTAGTTGTATGACATCAAGACAAAAAAGAGAAAAGTTGTTATCGCATGCTGCCAAAAATACTTGAAATTTAAAGCCTTGAAGTTTTTGATTGTGTTATTGATAATTACCTGTGCCTTTTGAGGAAATGTATAGCTGGAGTATACAATTTTGTATGAACTTTGTTTGTTTAAAGACAATAAATACCTATTTTTGTACAATTGCCTTGTATTAAGCCTAAATATGAAAACATGCATAATCATGTGAGACACGAACCACTGAGATGAAAACACAAGCCCCAGTCTAAGTCAGGAAATATTGAAGAAACCCACTTTTCTAAAATCAAAACAAATGCTGAGTGTCTGCTGTAGAGTACTAGGACTACATGTTATCACTTTGCTATCATTGCCTCAGCATGTTCCTACTTTACGACCATTTCTTGGCATTGTGAGATCACTGGCGAACTGTAAAAATCATCATGGGCGCACAGG

Function

NR:

description
zinc finger protein SNAI2-like

GO: NA

KEGG:

id description
K05706 SNAI2, SLUG; snail 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021607118.2 True 2006 mRNA 0.46 3 62346767 62349795

Neighbor

gene id symbol gene type direction distance location
LOC110526291 LOC106587268 coding upstream 135 62328353 ~ 62346632 (+)
LOC110526289 LOC106587268 coding upstream 47019 62284370 ~ 62299748 (+)
LOC110526286 ca7 coding upstream 262698 62071261 ~ 62084069 (+)
LOC110526284 LOC106587278 coding upstream 314211 62026088 ~ 62032556 (+)
LOC110526282 LOC106561985 coding upstream 367242 61971487 ~ 61979527 (+)
LOC110526295 LOC106587266 coding downstream 28077 62377872 ~ 62386332 (+)
LOC110526297 LOC106587264 coding downstream 110526 62460321 ~ 62464733 (+)
LOC110526300 tpc2l coding downstream 140287 62490082 ~ 62491688 (+)
LOC118965084 NA coding downstream 218254 62568049 ~ 62569967 (+)
LOC110526303 acsf3 coding downstream 298333 62648128 ~ 62685350 (+)
G531418 NA non-coding upstream 24816 62321521 ~ 62321951 (+)
G531410 NA non-coding upstream 163416 62160521 ~ 62183351 (+)
G531346 NA non-coding upstream 289620 62056916 ~ 62057147 (+)
G531345 NA non-coding upstream 289970 62056564 ~ 62056797 (+)
G531341 NA non-coding upstream 293559 62052998 ~ 62053208 (+)
G531510 NA non-coding downstream 151992 62501787 ~ 62506601 (+)
G531544 NA non-coding downstream 211068 62560863 ~ 62561065 (+)
G531511 NA non-coding downstream 215233 62565028 ~ 62565767 (+)
G531551 NA non-coding downstream 223077 62572872 ~ 62573091 (+)
G531553 NA non-coding downstream 225090 62574885 ~ 62575117 (+)
G531406 NA other upstream 194549 62149773 ~ 62152218 (+)
G528653 NA other upstream 2574683 59771708 ~ 59772084 (+)
G527450 NA other upstream 3567750 58778723 ~ 58779017 (+)
LOC110526933 LOC106562045 other upstream 3974799 58318920 ~ 58408967 (+)
G532259 NA other downstream 470625 62820420 ~ 62822616 (+)
LOC110526311 LOC106587159 other downstream 662463 63005672 ~ 63068991 (+)
G532237 LOC106591742 other downstream 683136 63032931 ~ 63198734 (+)
G532489 NA other downstream 958738 63308533 ~ 63343755 (+)
LOC100750227 LOC106587244 other downstream 988441 63338236 ~ 63549030 (+)

Expression


Co-expression Network