LOC110526295 (LOC106587266)


Basic Information

Item Value
gene id LOC110526295
gene name LOC106587266
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 62377872 ~ 62386332 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021607120.2
TCAAAATGCGCTGTTATTCCAGCACGAGCCTTTTGACAGCTATAAGAAATAGGCTGAATTAAATAAATCTCGAAATAGCTACACTAATCTAATGAATTTATCTACCTAAATAGAGTTTCGACGAACGCTGGTATCTGCTCACATAGTTTTAACTGGCAAGCTTGAACCGAAAACTGTTACAGCTACATTCTGCAAttgttggctagcaagctacaATAAATTAGAGCTCTTTGTCGCATAGCTAGCTAACTCGACCATGTGTCAGGTCGATGAGGAATACAATGGACAGCTAGAACACAGAGTGACCCCACGTGTCTCCAAGAAGTGTGTCAAATGCAAAGAAAATACAGCGGTATTGATCATCCGAGCTGGAGATGCATTTTGCAGGGGCTGCTTCAAGGAGTACTTCATCCACAAGTTCCGGGCCATGCTGGGAAAGAACCGGGTCATTTTCCCAGGAGAGAAGGTTCTTCTTGCAGTGTCTGGAGGGCCAGCCTCTAGCTCCATGCTGTCACAGGTTCAAGAGGGTTTGAGTCGAGACGCACCCAAGAAGTTGAGATTTGTCCCTGGAATTATCTACATAGATGAGGGCGGTGCCAGTGGTCAGAGCATGGAAGAGCGGGAGAGGGCAGTGGCTCAACTGGAGTCAGTTTTCAGAGCCACTAATTACCATTACCACATAGTCCACCTGGAACAGGTACTCAGTCTCCCcagctcagtgctagaggcaggATCATCGGCAACAGAAAAACCACAGACTGGGTCGAGTTATAAAGCTGCTGTGGACCAATTCATCCAGACCAAGAAGAACCAGCATCCAGACTTCTCTGTGGAGAATGCCCAGAGTCACCTGTCCAGTCTGAGCATGCAGAAGGTCGAGAATGGAGTAACCAGCCCCATCACCCCTGAACACACCCAAGCCCTTCAGAGACTGTTTGCCTCTGTGAGGACGCTGACAGCCAAAGAGGATTTGCTATATACACTGAGGCAGCACCTGATTCTCCACACAGCGAGGACACAGGGCTACACCAAGGTGATGATGGGGGACAGCTGCTCCCGTCTGGCCATCAAACTGCTCAGCAACATCTCTCTGGGGCGAGGGGCATCGCTGGCAACCGACACGGGCTTCTCAGATCCTCGCTACGGAGACGTGGTCATTGTCAGACCCATGAGGGACTATTCCTCTAAAGAAATAGCATATTACAACAGAATGTTTGACATCCCCTCTGTCTTTATCCCTGGCCTGGACACTAAGGCACAAGACAAGGCCAGCATCCAGCACCTGACAGAGAGCTTTGTCACCAAACTCCAAACTGACTTCCCCTCTACTGTCAGCACAATCTACAGGACCAGTGAGAAGCTCCACACAGCATGTCCCCCTCAGAACACCAACACACAACCCTTTGCTAAGTGCCTACTCTGTGTGTGCGCCTTGGACACTAAACTAGAGGAGTTCTCTGCCTACCAGGCTACACTGATCTCAGAGCAGCTGTCTCAGAGGCGGGGCCCAGGCCCTGGGTTCACCCGTGGTACAGAAGCAGCTCCAGGGCTGCCTCCAGTCTCCTCAGCAAGCCAGGGCCAGTGCTGCTCCTCTGGAGGGGGCCAGCATCAGGGCTGTATGACTGGAGAGGGGGGCTGCTGCTCCTCTGCTAAGGAGCCAGAGACGGTGGATCTTAAAAGCCTGTTGTGTTACAGTTGTAGACTGACCATCAAAGACATGACAGCAGAAGATGCCCTTCCCCAGTATATACTGTCAGAGgctgagagaaggaagagaagGTctcagatgagggaggagatcAGTGAGTTCCTGCtagatgaggaagaggatgaagccATCCCGAGGGTCAATGGGTCCTTGTGACTGCACAACGTCCAACGGCACTGCAGTGACGTAGTTCCCTTGGCAACTATACAGCCAAGGCTGTTTGTCTCAATATAAACTAACACCAATTGCTTTTAATGAATCAACTGACTGAGTAAATATTATTTGGCTAAAAGACAATAGGCTGATTTTAAACTGTATTTTAACTGCACCCAAAATAAAGCTGCTTTGTACATGG

Function

NR:

description
cytoplasmic tRNA 2-thiolation protein 2-like

GO: NA

KEGG:

id description
K14169 CTU2, NCS2; cytoplasmic tRNA 2-thiolation protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021607120.2 True 2063 mRNA 0.50 15 62377872 62386332

Neighbor

gene id symbol gene type direction distance location
LOC110526293 LOC106587174 coding upstream 28077 62346767 ~ 62349795 (+)
LOC110526291 LOC106587268 coding upstream 31240 62328353 ~ 62346632 (+)
LOC110526289 LOC106587268 coding upstream 78124 62284370 ~ 62299748 (+)
LOC110526286 ca7 coding upstream 293803 62071261 ~ 62084069 (+)
LOC110526284 LOC106587278 coding upstream 345316 62026088 ~ 62032556 (+)
LOC110526297 LOC106587264 coding downstream 73989 62460321 ~ 62464733 (+)
LOC110526300 tpc2l coding downstream 103750 62490082 ~ 62491688 (+)
LOC118965084 NA coding downstream 181717 62568049 ~ 62569967 (+)
LOC110526303 acsf3 coding downstream 261796 62648128 ~ 62685350 (+)
LOC110526307 LOC106587258 coding downstream 337113 62723445 ~ 62742080 (+)
G531418 NA non-coding upstream 55921 62321521 ~ 62321951 (+)
G531410 NA non-coding upstream 194521 62160521 ~ 62183351 (+)
G531346 NA non-coding upstream 320725 62056916 ~ 62057147 (+)
G531345 NA non-coding upstream 321075 62056564 ~ 62056797 (+)
G531341 NA non-coding upstream 324664 62052998 ~ 62053208 (+)
G531510 NA non-coding downstream 115455 62501787 ~ 62506601 (+)
G531544 NA non-coding downstream 174531 62560863 ~ 62561065 (+)
G531511 NA non-coding downstream 178696 62565028 ~ 62565767 (+)
G531551 NA non-coding downstream 186540 62572872 ~ 62573091 (+)
G531553 NA non-coding downstream 188553 62574885 ~ 62575117 (+)
G531406 NA other upstream 225654 62149773 ~ 62152218 (+)
LOC110526282 LOC106561985 other upstream 398345 61971487 ~ 61979527 (+)
G528653 NA other upstream 2605788 59771708 ~ 59772084 (+)
G527450 NA other upstream 3598855 58778723 ~ 58779017 (+)
LOC110526933 LOC106562045 other upstream 4005904 58318920 ~ 58408967 (+)
G532259 NA other downstream 434088 62820420 ~ 62822616 (+)
LOC110526311 LOC106587159 other downstream 625926 63005672 ~ 63068991 (+)
G532237 LOC106591742 other downstream 646599 63032931 ~ 63198734 (+)
G532489 NA other downstream 922201 63308533 ~ 63343755 (+)
LOC100750227 LOC106587244 other downstream 951904 63338236 ~ 63549030 (+)

Expression


Co-expression Network