LOC110526298 (galns)


Basic Information

Item Value
gene id LOC110526298
gene name galns
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 62467186 ~ 62490147 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036980641.1
TGATTACTCTAATGGAATGCTGACATGACTGGATGTGTCCTCTCTGATTATATACCACGTATACTTGAAATATATTGACATACAATAATACACAGCATGCCAAAATATGCTTTGTATTTGGTCTCTGTCAGGAAATGATGGGCTGGGGAGATTTGGGAGTGTTTGGCCAGCCCTCCAAGGAGACCCCAAACCTTGACTCCATGGCTGCCCAAGGGATGCTGTTCCCCAACTTCTACACAGCTAACCCCCTCTGCTCTCCATccagaGCTTCACTTCTGACAGGACGATTACCAGTTAGGAATGGATTCTATACCACCAATGCCCATGCCAGGAATGCCTACACACCCCAAGAGATAGTAGGAGGGATCTCAAGGGATGAAATTCTATTACCACAGATACTGAAGAAGAAGGGTTACGTCAACAAGATCATCGGCAAGTGGCATCTTGGCCACAGAGCTCACCACCTACCTCTGGAGCATGGTTTTGATGAATGGTTTGGTGCTCCAAACTGCCACTTCGGTCCCTACAACAGCAGCGACAGGCCTAATGTCCCGGTCTATAACAACTCTCAGATGGTGGGaagATACTATGAGGAGTTTGGGATCGATAAGaaaactggggaatctaaccttACACAAATCTACTTGGAGGAGGGCCTTGACTTCATATTTCACCAGAACATGGCCCAGCGGCCATTTTTTCTCTACTGGGCAGCAGATGCTACGCATGCTCCGGTCTACGCTTCAAAACGGTTCCTGGGGAAGAGCTCGAGGGGGCGGTACGGTGATGCAGTGATGGAGCTGGACTACAGTGTTGGACAGATGCTGGCCTGGCTGCGTGCTCTGGGCATCGACAAGGACACCTTTGTGTTCTTCACCTCGGACAACGGAGCCGCAGTGATGTCCGGCCCCAAGCAGAGTGGCAGTAACGGCCCGTTTCTCTGTGGGAAAGAAACTACGTTTGAGGGTGGAATGAGGGAACCTGCCATCGCCTGGTGGCCTGGACACATCCCAGCAGGCACGgtGAGCCAACAGCTGGGGACTGTGATGGATCTGTTCAGCACCAGTCTGTCTGTGGCAGGCCTCAGTGTTCCAGATGACAGGCTCATAGATGGACTGGACCTCAGCCCTGTCCTCCATAACAACACACTCATCAACAGGCCCATCTTCTATTACCGCGGCAATGAGATGATGGCAGTCAGGGTTGGGCCTTACAAGGCCCACTATTGGACGTGGAGCAACTCGTGGGAGGAGTTTAACCGGGGCATTAACTTCTGTCCAGGACAAGAGGTGGCAGGCGTAACCACCCACACCCAACAGGAACACACCATGCAGCCACTCATCTTCCACCTGGGGCGGGACCCCGGGGAGAAATACCCTATCAGTGCTGTGACTAAGGAGTACCAGGATGCACTGAGTCGGATCACAGCAGTGGTAGAGAAGCATAAGAAAGGTCTGGTACCAGGTGTGCCCCAGCTCAATATGTGTGACATGGCTGTCATGAACTGGGCCCCTCCAGGATGTGAAAAGTTAGGAAAATGCCTTAAAGCACCCAAGTCACAGCCCTGGAAGTGTGACTGGCCGCACTAGCTATCTGTTTCAGAGCCACCCTGGGAAAAGGGAGGATGTCAGCGAAGATGCTGCCTTGATGAAGAGCCATTTTCAGGAATTCAACTTGAATGTCTATTAGCTTTTAACTTGGAATGTTGAAACAGAACAGCATATGGTTTGAATGAAGGACATAAACAATGGGACGAATGCTGTCTGGGTTCCATATGATTATTAATAGAATGAAGCTGATTTGCAACTGCTTTTttttatgatgccatctatgtaGATGTTTTTCTCTCTTTACTTACTTATGCACTATTGTTTAAGACTTATTGAAATAGGGcaaaacctttttttttctccaactgGAATAAAAACATTTTATCCTAC
>XM_021607124.2
TGGAAAATAACGGGACTTGTGTTTTTAAGCGTGTCAACATCGCGTAGTAAAGTCAGCTAAACCCAATTGAATATGCGCAAGTGTTGCGCTAAAAAAGCTCGTGAAAGCAAACAATGAGAAATGGTCATGTGCTTCCTGAATGTGTTATCATGTGATACTTCCTCATCGCTTTCTTCGTCTTGCTTTCTGCAATGGATGTCTGTCTAATTCAAACTTTgatattgttttgtagtttaatATGTTGTTTTTGGGCAGATACTCCTTCAAACAAGTCGACTCCGAACATTATCATCATTCTTATGGATGACATGGGCTGGGGAGATTTGGGAGTGTTTGGCCAGCCCTCCAAGGAGACCCCAAACCTTGACTCCATGGCTGCCCAAGGGATGCTGTTCCCCAACTTCTACACAGCTAACCCCCTCTGCTCTCCATccagaGCTTCACTTCTGACAGGACGATTACCAGTTAGGAATGGATTCTATACCACCAATGCCCATGCCAGGAATGCCTACACACCCCAAGAGATAGTAGGAGGGATCTCAAGGGATGAAATTCTATTACCACAGATACTGAAGAAGAAGGGTTACGTCAACAAGATCATCGGCAAGTGGCATCTTGGCCACAGAGCTCACCACCTACCTCTGGAGCATGGTTTTGATGAATGGTTTGGTGCTCCAAACTGCCACTTCGGTCCCTACAACAGCAGCGACAGGCCTAATGTCCCGGTCTATAACAACTCTCAGATGGTGGGaagATACTATGAGGAGTTTGGGATCGATAAGaaaactggggaatctaaccttACACAAATCTACTTGGAGGAGGGCCTTGACTTCATATTTCACCAGAACATGGCCCAGCGGCCATTTTTTCTCTACTGGGCAGCAGATGCTACGCATGCTCCGGTCTACGCTTCAAAACGGTTCCTGGGGAAGAGCTCGAGGGGGCGGTACGGTGATGCAGTGATGGAGCTGGACTACAGTGTTGGACAGATGCTGGCCTGGCTGCGTGCTCTGGGCATCGACAAGGACACCTTTGTGTTCTTCACCTCGGACAACGGAGCCGCAGTGATGTCCGGCCCCAAGCAGAGTGGCAGTAACGGCCCGTTTCTCTGTGGGAAAGAAACTACGTTTGAGGGTGGAATGAGGGAACCTGCCATCGCCTGGTGGCCTGGACACATCCCAGCAGGCACGgtGAGCCAACAGCTGGGGACTGTGATGGATCTGTTCAGCACCAGTCTGTCTGTGGCAGGCCTCAGTGTTCCAGATGACAGGCTCATAGATGGACTGGACCTCAGCCCTGTCCTCCATAACAACACACTCATCAACAGGCCCATCTTCTATTACCGCGGCAATGAGATGATGGCAGTCAGGGTTGGGCCTTACAAGGCCCACTATTGGACGTGGAGCAACTCGTGGGAGGAGTTTAACCGGGGCATTAACTTCTGTCCAGGACAAGAGGTGGCAGGCGTAACCACCCACACCCAACAGGAACACACCATGCAGCCACTCATCTTCCACCTGGGGCGGGACCCCGGGGAGAAATACCCTATCAGTGCTGTGACTAAGGAGTACCAGGATGCACTGAGTCGGATCACAGCAGTGGTAGAGAAGCATAAGAAAGGTCTGGTACCAGGTGTGCCCCAGCTCAATATGTGTGACATGGCTGTCATGAACTGGGCCCCTCCAGGATGTGAAAAGTTAGGAAAATGCCTTAAAGCACCCAAGTCACAGCCCTGGAAGTGTGACTGGCCGCACTAGCTATCTGTTTCAGAGCCACCCTGGGAAAAGGGAGGATGTCAGCGAAGATGCTGCCTTGATGAAGAGCCATTTTCAGGAATTCAACTTGAATGTCTATTAGCTTTTAACTTGGAATGTTGAAACAGAACAGCATATGGTTTGAATGAAGGACATAAACAATGGGACGAATGCTGTCTGGGTTCCATATGATTATTAATAGAATGAAGCTGATTTGCAACTGCTTTTttttatgatgccatctatgtaGATGTTTTTCTCTCTTTACTTACTTATGCACTATTGTTTAAGACTTATTGAAATAGGGcaaaacctttttttttctccaactgGAATAAAAACATTTTATCCTAC
>XM_036980642.1
CATGTGATACTTCCTCATCGCTTTCTTCGTCTTGCTTTCTGCAATGGATGTCTGTCTAATTCAAACTTTgatattgttttgtagtttaatATGTTGTTTTTGGGCAGATACTCCTTCAAACAAGTCGACTCCGAACATTATCATCATTCTTATGGATGACATGGGCTGGGGAGATTTGGGAGTGTTTGGCCAGCCCTCCAAGGAGACCCCAAACCTTGACTCCATGGCTGCCCAAGGGATGCTGTTCCCCAACTTCTACACAGCTAACCCCCTCTGCTCTCCATccagaGCTTCACTTCTGACAGGACGATTACCAGTTAGGAATGGATTCTATACCACCAATGCCCATGCCAGGAATGCCTACACACCCCAAGAGATAGTAGGAGGGATCTCAAGGGATGAAATTCTATTACCACAGATACTGAAGAAGAAGGGTTACGTCAACAAGATCATCGGCAAGTGGCATCTTGGCCACAGAGCTCACCACCTACCTCTGGAGCATGGTTTTGATGAATGGTTTGGTGCTCCAAACTGCCACTTCGGTCCCTACAACAGCAGCGACAGGCCTAATGTCCCGGTCTATAACAACTCTCAGATGGTGGGaagATACTATGAGGAGTTTGGGATCGATAAGaaaactggggaatctaaccttACACAAATCTACTTGGAGGAGGGCCTTGACTTCATATTTCACCAGAACATGGCCCAGCGGCCATTTTTTCTCTACTGGGCAGCAGATGCTACGCATGCTCCGGTCTACGCTTCAAAACGGTTCCTGGGGAAGAGCTCGAGGGGGCGGTACGGTGATGCAGTGATGGAGCTGGACTACAGTGTTGGACAGATGCTGGCCTGGCTGCGTGCTCTGGGCATCGACAAGGACACCTTTGTGTTCTTCACCTCGGACAACGGAGCCGCAGTGATGTCCGGCCCCAAGCAGAGTGGCAGTAACGGCCCGTTTCTCTGTGGGAAAGAAACTACGTTTGAGGGTGGAATGAGGGAACCTGCCATCGCCTGGTGGCCTGGACACATCCCAGCAGGCACGGGCATTAACTTCTGTCCAGGACAAGAGGTGGCAGGCGTAACCACCCACACCCAACAGGAACACACCATGCAGCCACTCATCTTCCACCTGGGGCGGGACCCCGGGGAGAAATACCCTATCAGTGCTGTGACTAAGGAGTACCAGGATGCACTGAGTCGGATCACAGCAGTGGTAGAGAAGCATAAGAAAGGTCTGGTACCAGGTGTGCCCCAGCTCAATATGTGTGACATGGCTGTCATGAACTGGGCCCCTCCAGGATGTGAAAAGTTAGGAAAATGCCTTAAAGCACCCAAGTCACAGCCCTGGAAGTGTGACTGGCCGCACTAGCTATCTGTTTCAGAGCCACCCTGGGAAAAGGGAGGATGTCAGCGAAGATGCTGCCTTGATGAAGAGCCATTTTCAGGAATTCAACTTGAATGTCTATTAGCTTTTAACTTGGAATGTTGAAACAGAACAGCATATGGTTTGAATGAAGGACATAAACAATGGGACGAATGCTGTCTGGGTTCCATATGATTATTAATAGAATGAAGCTGATTTGCAACTGCTTTTttttatgatgccatctatgtaGATGTTTTTCTCTCTTTACTTACTTATGCACTATTGTTTAAGACTTATTGAAATAGGGcaaaacctttttttttctccaactgGAATAAAAACATTTTATCCTA
>XR_002473917.2
CATGTGATACTTCCTCATCGCTTTCTTCGTCTTGCTTTCTGCAATGGATGTCTGTCTAATTCAAACTTTgatattgttttgtagtttaatATGTTGTTTTTGGGCAGATACTCCTTCAAACAAGTCGACTCCGAACATTATCATCATTCTTATGGATGACATGGGCTGGGGAGATTTGGGAGTGTTTGGCCAGCCCTCCAAGGAGACCCCAAACCTTGACTCCATGGCTGCCCAAGGGATGCTGTTCCCCAACTTCTACACAGCTAACCCCCTCTGCTCTCCATccagaGCTTCACTTCTGACAGGACGATTACCAGTTAGGAATGGATTCTATACCACCAATGCCCATGCCAGGAATGCCTACACACCCCAAGAGATAGTAGGAGGGATCTCAAGGGATGAAATTCTATTACCACAGATACTGAAGAAGAAGGGTTACGTCAACAAGATCATCGGCAAGTGGCATCTTGGCCACAGAGCTCACCACCTACCTCTGGAGCATGGTTTTGATGAATGGTTTGGTGCTCCAAACTGCCACTTCGGTCCCTACAACAGCAGCGACAGGCCTAATGTCCCGGTCTATAACAACTCTCAGATGGTGGGaagATACTATGAGGAGTTTGGGATCGATAAGaaaactggggaatctaaccttACACAAATCTACTTGGAGGAGGGCCTTGACTTCATATTTCACCAGAACATGGCCCAGCGGCCATTTTTTCTCTACTGGGCAGCAGATGCTACGCATGCTCCGGTCTACGCTTCAAAACGGTTCCTGGGGAAGAGCTCGAGGGGGCGGTACGGTGATGCAGTGATGGAGCTGGACTACAGTGTTGGACAGATGCTGGCCTGGCTGCGTGCTCTGGGCATCGACAAGGACACCTTTGTGTTCTTCACCTCGGACAACGGAGCCGCAGTGATGTCCGGCCCCAAGCAGAGTGGCAGTAACGGCCCGTTTCTCTGTGGGAAAGAAACTACGTTTGAGGGTGGAATGAGGGAACCTGCCATCGCCTGGTGGCCTGGACACATCCCAGCAGGCACGgtGAGCCAACAGCTGGGGACTGTGATGGATCTGTTCAGCACCAGTCTGTCTGTGGCAGGCCTCAGTGTTCCAGATGACAGGCTCATAGATGGACTGGACCTCAGCCCTGTCCTCCATAACAACACACTCATCAACAGGCCCATCTTCTATTACCGCGGCAATGAGATGATGGCAGTCAGGGTTGGGCCTTACAAGGCCCACTATTGGACGTGGAGCAACTCGTGGGAGGAGTTTAACCGGGACAAGAGGTGGCAGGCGTAACCACCCACACCCAACAGGAACACACCATGCAGCCACTCATCTTCCACCTGGGGCGGGACCCCGGGGAGAAATACCCTATCAGTGCTGTGACTAAGGAGTACCAGGATGCACTGAGTCGGATCACAGCAGTGGTAGAGAAGCATAAGAAAGGTCTGGTACCAGGTGTGCCCCAGCTCAATATGTGTGACATGGCTGTCATG
>XM_036980643.1
CATGTGATACTTCCTCATCGCTTTCTTCGTCTTGCTTTCTGCAATGGATGTCTGTCTAATTCAAACTTTgatattgttttgtagtttaatATGTTGTTTTTGGGCAGATACTCCTTCAAACAAGTCGACTCCGAACATTATCATCATTCTTATGGATGACATGGGCTGGGGAGATTTGGGAGTGTTTGGCCAGCCCTCCAAGGAGACCCCAAACCTTGACTCCATGGCTGCCCAAGGGATGCTGTTCCCCAACTTCTACACAGCTAACCCCCTCTGCTCTCCATccagaGCTTCACTTCTGACAGGACGATTACCAGTTAGGAATGGATTCTATACCACCAATGCCCATGCCAGGAATGCCTACACACCCCAAGAGATAGTAGGAGGGATCTCAAGGGATGAAATTCTATTACCACAGATACTGAAGAAGAAGGGTTACGTCAACAAGATCATCGGCAAGTGGCATCTTGGCCACAGAGCTCACCACCTACCTCTGGAGCATGGTTTTGATGAATGGTTTGGTGCTCCAAACTGCCACTTCGGTCCCTACAACAGCAGCGACAGGCCTAATGTCCCGGTCTATAACAACTCTCAGATGGTGGGaagATACTATGAGGAGTTTGGGATCGATAAGaaaactggggaatctaaccttACACAAATCTACTTGGAGGAGGGCCTTGACTTCATATTTCACCAGAACATGGCCCAGCGGCCATTTTTTCTCTACTGGGCAGCAGATGCTACGCATGCTCCGGTCTACGCTTCAAAACGGTTCCTGGGGAAGAGCTCGAGGGGGCGGTACGGTGATGCAGTGATGGAGCTGGACTACAGTGTTGGACAGATGCTGGCCTGGCTGCGTGCTCTGGGCATCGACAAGGACACCTTTGTGTTCTTCACCTCGGACAACGGAGCCGCAGTGATGTCCGGCCCCAAGCAGAGTGGCAGTAACGGCCCGTTTCTCTGTGGGAAAGAAACTACGTTTGAGGGTGGAATGAGGGAACCTGCCATCGCCTGGTGGCCTGGACACATCCCAGCAGGCACGgtGAGCCAACAGCTGGGGACTGTGATGGATCTGTTCAGCACCAGTCTGTCTGTGGCAGGCCTCAGTGTTCCAGATGACAGGCTCATAGATGGACTGGACCTCAGCCCTGTCCTCCATAACAACACACTCATCAACAGGCCCATCTTCTATTACCGCGGCAATGAGATGATGGCAGTCAGGGTTGGGCCTTACAAGGCCCACTATTGGACGTGGAGCAACTCGTGGGAGGAGTTTAACCGGCAAGCCATCCACAGTGCTCTATAAAAACACACATTTGGTAGTCAGTGTTATCTTGAAAACAGCTCATCAAGTGGCTGTTGTGTACATCAGTGGCTAATGAATATTAATGAGGACACCCCACTTCACCAAAGTACTATCATTAATCAGCACTGGCTGTCGCTGGTGGAGCGTTCTCCCCTCCTGTTGAGTATCCTGCTCTCCCCTCCTGCTGAGTATCCTGCTCTCCCCTCCTGCTGAGTATCCTGCTCTCCCCTCCTGCTGAGTATCCTGCTCTCCCC

Function

symbol description
galns Predicted to enable arylsulfatase activity. Predicted to be located in lysosome. Human ortholog(s) of this gene implicated in mucopolysaccharidosis IVA. Orthologous to human GALNS (galactosamine (N-acetyl)-6-sulfatase).

NR:

description
N-acetylgalactosamine-6-sulfatase isoform X2

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0008484 sulfuric ester hydrolase activity molecular_function

KEGG:

id description
K01132 GALNS; N-acetylgalactosamine-6-sulfatase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036980641.1 False 1940 mRNA 0.49 14 62467186 62489759
XM_021607124.2 False 2111 mRNA 0.48 14 62467186 62490147
XM_036980642.1 False 1722 mRNA 0.48 12 62467187 62489999
XR_002473917.2 False 1506 mRNA 0.52 13 62468239 62489999
XM_036980643.1 True 1563 mRNA 0.51 12 62478012 62489999

Neighbor

gene id symbol gene type direction distance location
LOC110526938 NA coding downstream 175 62464460 ~ 62467011 (-)
LOC110526294 LOC106587265 coding downstream 8492 62386430 ~ 62458694 (-)
LOC110526296 LOC106587267 coding downstream 89460 62357307 ~ 62377726 (-)
LOC110526290 LOC106587270 coding downstream 144329 62319792 ~ 62322857 (-)
trnaf-gaa-77 NA coding downstream 196430 62270684 ~ 62270756 (-)
pabpn1l LOC106587263 coding upstream 1529 62491676 ~ 62494804 (-)
LOC110526302 LOC106562167 coding upstream 10518 62500665 ~ 62566214 (-)
LOC110526304 NA coding upstream 133148 62623295 ~ 62647175 (-)
LOC110526305 LOC106587257 coding upstream 252040 62742187 ~ 62748381 (-)
LOC110526309 dpep1 coding upstream 476068 62966215 ~ 62974919 (-)
G532047 NA non-coding downstream 120435 62344282 ~ 62346751 (-)
G532026 LOC106587268 non-coding downstream 129765 62284303 ~ 62337421 (-)
G531952 NA non-coding downstream 422710 62044140 ~ 62044476 (-)
G532133 NA non-coding upstream 47073 62537220 ~ 62537483 (-)
G532165 NA non-coding upstream 103260 62593407 ~ 62593637 (-)
G532168 NA non-coding upstream 109147 62599294 ~ 62599536 (-)
G532192 NA non-coding upstream 168700 62658847 ~ 62659073 (-)
znf536 LOC106562015 other downstream 2770223 59507092 ~ 59698393 (-)
G527449 NA other downstream 3688719 58777782 ~ 58778467 (-)
G526903 NA other downstream 4208210 58258552 ~ 58258976 (-)
G526784 dhcr7 other downstream 4312270 58151850 ~ 58154916 (-)
G526752 NA other downstream 4485395 57981467 ~ 57981791 (-)
G532766 NA other upstream 332758 62822905 ~ 62855007 (-)
G532763 NA other upstream 361549 62851696 ~ 62852817 (-)
LOC110526310 LOC106587159 other upstream 495382 62985486 ~ 62991995 (-)
igdcc3 LOC106562146 other upstream 1333752 63823887 ~ 63944930 (-)

Expression


Co-expression Network