pabpn1l (LOC106587263)


Basic Information

Item Value
gene id pabpn1l
gene name LOC106587263
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 62491676 ~ 62494804 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021607126.2
GGGGCAAGCCCACAACCATGTGATGCACAGACAGGTGACAATTAATTGACATTCCCTCTCGTCATATTTGACAGACAGGTAAGCAACCACTATTGACAAGGGCGTGGGTAGATTCCGTCCGCGGGaagatatttttatttaatccaaaCAAACTTCCGTATATAGGCTACATTTATTAACCTTATTCAAATCGGAgaagtgatttaaaaaaaaaacatcgaTTGCATTGGAGTCTTCTACACTGGACTGGCTACAAGAGAGCGACGTCGCGGGGATTGAAGTGGCGTCTGCGGGCATGGGTTTGGTGTCTGCTGTTGAGCACTGAATATGGCGGAGCAAAGGCAAGATATGTACATAGAAGGCGAGCTCACGGGAGATCATTACATGGAGGACCCGGAGCTTGAAGCAATCAAGGCACGGGTgcaagagatggaggaggaggagcggcTGAGAGCAGTGCAGTATGAGGCAACAGAGAGACAGATCCAGGCAGGAATGTTCTATACAATGACCCATGAGGAAAGGATAGATGCTGACAACAGATCTGTCTATGTGGGAAATGTGGAGTATGGTGCCACTGCAGATGAGTTGGAGATCCATTTCAATGGCTGTGGTCCTGTCAACAGAGTAACCATCCTTTGTGACAAATTCTCTGGCCATCCCAAGGGTTTTGCATATATTGAGTTCCATGACAGGGACTCAGTGCAGACTGCCATGAGCCTGGATGAGACGGTATTCAGAGACAGAGTCATAAAGGTATTGCCTAAAAGGACCAACATGCCAGGAATCAGCACCACAGACAGGGGGATTCACAGAGGTGCTCGATCCAGGGGGCGAGGTTTCCACCCACCCAGATACAATGggtatcaacaaggcaggttccgCTACAATACTGGCCCTGCCAGGTCAGTCTCACCACACCCCTACGGGCCCCCAGCTGGGAAGAGACACTGGGGGGTTCCTGAGCACCGTGAGCAGGGCCCTAAACGGCACCCATGCCTTCTTCTCATAACCCCACCCACTGACCACTCTGGGCCGGGGCACAGTGGACACATGCACCCGCAGCAACACTACTGAATCACGTCTGGATTCAAGTTATTGTTTGATATCAACATGGAATGAGAATTTCAGGAAATCGTGTCTTGCTCGTCTCTACTCGACTCATTTGCAAATTATTTTCAATGCATGTTAATGGGCAGAAATCGAGAGAAAAGCAGATTTCAACCTCATTGAATTAATTCATATGGCAACTTTTGTTAACTGTCTCTATAAAAAGTTATTGCAACTTAATCCTAACAAGAAAGACTTTGCAATGGCCATTTTGTCCTCTTATTGTAGGGGAAATGGATGAGGCCAGCCTTGGTTTGCTGCTTAATACGGTTAAAGATTGTGCCTATggtgttgttttatttcttgagCAGTTTCTGTGCCATTATTTACCCCAATAACTTTTTGAATGCACAGCCATTTGCCATGtcagaaactttttttttttaaggatgtTTTGATCAGATCACTCATTCTGTTGGTGTGGCTATCGAGCTTGTAAGTATAGTTGTTGTAAAACACCAAACACAAATGATAACATTTGGGGTGTGATTGGCTTTCTTTTGTAACTATATTGACATGCAATTGGCAGTTTGAGCGACTGAGTGGTTGCTATGTACTTGAAGCAATGTTTATCGCTGTATATAATTTGTCAACCATCTTTTGCTTTAGAAATGAATAAATGAATTACACTTGAGTGCTTATTTGAAA
>XM_021607125.2
GGGGCAAGCCCACAACCATGTGATGCACAGACAGGTGACAATTAATTGACATTCCCTCTCGTCATATTTGACAGACAGGTAAGCAACCACTATTGACAAGGGCGTGGGTAGATTCCGTCCGCGGGaagatatttttatttaatccaaaCAAACTTCCGTATATAGGCTACATTTATTAACCTTATTCAAATCGGAgaagtgatttaaaaaaaaaacatcgaTTGCATTGGAGTCTTCTACACTGGACTGGCTACAAGAGAGCGACGTCGCGGGGATTGAAGTGGCGTCTGCGGGCATGGGTTTGGTGTCTGCTGTTGAGCACTGAATATGGCGGAGCAAAGGCAAGATATGTACATAGAAGGCGAGCTCACGGGAGATCATTACATGGAGGACCCGGAGCTTGAAGCAATCAAGGCACGGGTgcaagagatggaggaggaggagcggcTGAGAGCAGTGCAGTATGAGGCAACAGAGAGACAGATCCAGGCAGCAGGAATGTTCTATACAATGACCCATGAGGAAAGGATAGATGCTGACAACAGATCTGTCTATGTGGGAAATGTGGAGTATGGTGCCACTGCAGATGAGTTGGAGATCCATTTCAATGGCTGTGGTCCTGTCAACAGAGTAACCATCCTTTGTGACAAATTCTCTGGCCATCCCAAGGGTTTTGCATATATTGAGTTCCATGACAGGGACTCAGTGCAGACTGCCATGAGCCTGGATGAGACGGTATTCAGAGACAGAGTCATAAAGGTATTGCCTAAAAGGACCAACATGCCAGGAATCAGCACCACAGACAGGGGGATTCACAGAGGTGCTCGATCCAGGGGGCGAGGTTTCCACCCACCCAGATACAATGggtatcaacaaggcaggttccgCTACAATACTGGCCCTGCCAGGTCAGTCTCACCACACCCCTACGGGCCCCCAGCTGGGAAGAGACACTGGGGGGTTCCTGAGCACCGTGAGCAGGGCCCTAAACGGCACCCATGCCTTCTTCTCATAACCCCACCCACTGACCACTCTGGGCCGGGGCACAGTGGACACATGCACCCGCAGCAACACTACTGAATCACGTCTGGATTCAAGTTATTGTTTGATATCAACATGGAATGAGAATTTCAGGAAATCGTGTCTTGCTCGTCTCTACTCGACTCATTTGCAAATTATTTTCAATGCATGTTAATGGGCAGAAATCGAGAGAAAAGCAGATTTCAACCTCATTGAATTAATTCATATGGCAACTTTTGTTAACTGTCTCTATAAAAAGTTATTGCAACTTAATCCTAACAAGAAAGACTTTGCAATGGCCATTTTGTCCTCTTATTGTAGGGGAAATGGATGAGGCCAGCCTTGGTTTGCTGCTTAATACGGTTAAAGATTGTGCCTATggtgttgttttatttcttgagCAGTTTCTGTGCCATTATTTACCCCAATAACTTTTTGAATGCACAGCCATTTGCCATGtcagaaactttttttttttaaggatgtTTTGATCAGATCACTCATTCTGTTGGTGTGGCTATCGAGCTTGTAAGTATAGTTGTTGTAAAACACCAAACACAAATGATAACATTTGGGGTGTGATTGGCTTTCTTTTGTAACTATATTGACATGCAATTGGCAGTTTGAGCGACTGAGTGGTTGCTATGTACTTGAAGCAATGTTTATCGCTGTATATAATTTGTCAACCATCTTTTGCTTTAGAAATGAATAAATGAATTACACTTGA

Function

NR:

description
embryonic polyadenylate-binding protein 2-B-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021607126.2 False 1758 mRNA 0.45 6 62491676 62494804
XM_021607125.2 True 1747 mRNA 0.45 6 62491690 62494804

Neighbor

gene id symbol gene type direction distance location
LOC110526298 galns coding downstream 1529 62467186 ~ 62490147 (-)
LOC110526938 NA coding downstream 24665 62464460 ~ 62467011 (-)
LOC110526294 LOC106587265 coding downstream 32982 62386430 ~ 62458694 (-)
LOC110526296 LOC106587267 coding downstream 113950 62357307 ~ 62377726 (-)
LOC110526290 LOC106587270 coding downstream 168819 62319792 ~ 62322857 (-)
LOC110526302 LOC106562167 coding upstream 5861 62500665 ~ 62566214 (-)
LOC110526304 NA coding upstream 128491 62623295 ~ 62647175 (-)
LOC110526305 LOC106587257 coding upstream 247383 62742187 ~ 62748381 (-)
LOC110526309 dpep1 coding upstream 471411 62966215 ~ 62974919 (-)
LOC110526310 LOC106587159 coding upstream 490682 62985486 ~ 62991995 (-)
G532047 NA non-coding downstream 144925 62344282 ~ 62346751 (-)
G532026 LOC106587268 non-coding downstream 154255 62284303 ~ 62337421 (-)
G531952 NA non-coding downstream 447200 62044140 ~ 62044476 (-)
G532133 NA non-coding upstream 42416 62537220 ~ 62537483 (-)
G532165 NA non-coding upstream 98603 62593407 ~ 62593637 (-)
G532168 NA non-coding upstream 104490 62599294 ~ 62599536 (-)
G532192 NA non-coding upstream 164043 62658847 ~ 62659073 (-)
znf536 LOC106562015 other downstream 2794713 59507092 ~ 59698393 (-)
G527449 NA other downstream 3713209 58777782 ~ 58778467 (-)
G526903 NA other downstream 4232700 58258552 ~ 58258976 (-)
G526784 dhcr7 other downstream 4336760 58151850 ~ 58154916 (-)
G526752 NA other downstream 4509885 57981467 ~ 57981791 (-)
G532766 NA other upstream 328101 62822905 ~ 62855007 (-)
G532763 NA other upstream 356892 62851696 ~ 62852817 (-)
igdcc3 LOC106562146 other upstream 1329095 63823887 ~ 63944930 (-)

Expression


Co-expression Network