LOC110526307 (LOC106587258)


Basic Information

Item Value
gene id LOC110526307
gene name LOC106587258
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 62723445 ~ 62742080 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021607143.2
CACTCACTgcccagagaaagagagggagagagacacacagggggTTTGGATTTGAGACATTTGGTTCCATTGCCCAGTACTGTCAGGAACCCTGAGCTTCTCTTAAAACTGGTTTGAGAAAGAGGATCCACCGTGGTCATTGGGTACAGTACGTGTTGGGGTTTGTTGAGAAGATCGCATGCTGGCACAGGAGATGGCATCAAGGGGGTTGGCAGTGCTGTGTGTGCTGGTGgctggccttggtcagGTCGGGAGCAGTGGCCAAGCGGGCAGGGAGGACCTGAACCCAGCGGCCCTGTATCCATGGAGACAGAGGAGCAGTGGGGGTCTGAGCAGGGTGAAGAGGGACTGGATCATCCCTCCAATCAGGGTGCTGGAGAACAGCAAGCAAGTCCCTGAAAACCTGGTCCAGATCAAATCAGACAAGATTTTCACTGGAGAAGTGATCTACAAGCTGGAAGGACCAGGGGTTGACCAGGACCCTAAGGACCTGTTTGAGATAGATGATAAAACAGGCTGGATCAGGAGCATGATTCCCCTggacagagagaaatacagaagCTTCACGCTGAAAGCCTTTGCCCTGTCGCCCagtggagagagactggagaatCCCTCCACCATTGAGATCGTAGTGCTGGATCAAAATGATAACCGGCCCAACTTCTCCCAGAAAGAGTTTGCTGGATCCGTTTATGAATTCTCCGTACCAGGCACATCTGTGATGTCTGTGACTGCGACTGATGCTGACGACCCAACCACAGACAACGCTATCCTGAGCTACTCCATCATTGGCCAGGAGAGCATCCCGCCTCTCCGCATCAACAAGACCATGTTTGGCATCAACAACGAGACAGGGGCCATTTACACACGAGACGTGGGTCTAGACTGGGAGGTGGTTAAAGGCTTTAGGTTGAAACTGCAGGTTGCTGACATGTCAGGCATGGGGTTAACCAGTCTTGCGAATGCAGTCATACATGTGactgacatcaacaacaacccCCCACGATTCTCCCCAGACCTGTACACTATGTCAGCTGTGGAGAACAAAATAGACTTTGTGATTGGCTGGGTCAACGCCACAGACAATGATGAGCCAGGGACAGGAAACTGGGAGACAAAATACACCATCGCCAAGGGCAACCCCTCTAGGAACTTTGCCATTCGCACAGACCCTGTGACCAACGAGGGTATTCTGTCAGTGGTGAAGGCTCTGGACTACGAGTCCCAAGAGGTGTATACTCTGACTCTGACAGTGGAGAATGTGAACCCTCTCAGCATCAAGGCCCCCAAGAACCCTGTAAGCAGTGCCACAGTGGTGGTGACCGTGGTGAATGAGAACGAGGCCCCACGCTTTATTAAAGACCCCATAGAGATCTTGGTTCCTGAGTCTGTGGACCCTGGCACCGTGCTGGCCAGTAACATCGCCTACGATCCCGATAATGCAAAACTCAAGTATGACATACTCAGAGATCCTGAGGGATGGCTTATAATCAATCACGAGACTGGAGAAATCGCAGCCAGGAAACCGTTCAATGTCCTCTCCCCTCACGTCAAGAACAACATTTACAATGCAGTCATCAGAGTCACAGACACAGACGCTGGTGGAATCTCGACCACAGCGTCTCTGGTGATCACGTTGTGGGAGACCAATGACTTCCTCCCTCAGCTGTTCCCCTTGATGGGGACGGTGTGCAGCGAGTCAGGCCGGAAGGCATCTGGTCTGTTCCTGACTGCTGTGGATGAGGACCTGCCCCCTCACGCTGAACCCTTCACCTTCCACCTGCAAGACATTAATGTGTCTGCCAACTGGACCATCATACAGGTCAATGagacaCATGCAGTGCTGCGACCCCTGGTAGAGCTGGAGACAGGGGAATATGGTGTCACTGTGTTGGTGACTGACTCTGGCACCCCAAGTCTCAGTGCATATGCTCAGGTCAATGTGACGGTGTGTCCGTGTGGGAAAGACGGTGAATGTAAGACCGAAGCTGCTGCCATATTCGGAACACGAGTTGGTGTCAGCTTCATCGCCTTACTGGTCATCATGGCCAGCATCGCACTCCTGCTGTTGTTGCTACTCCTGGCTGTAGCCGTGGGTAACTGCAGACGGCATCATATGAAGAAAGGAGAAGGTCTGTTGGTGGGGGATTCAGACGAAGACATCCGTGACAACGTCCTGAACTATGACGAGcagggtggtggagaggaggatgagAATGCCTTCAACATTGACCTACTGAGGAACCCAACGGATGTGGGACCACTCCCAATATCCTACTACCCTCCCGTCTCTGGCATCCCCAGGGGAAAGCAGCCACTCAGGAAAGACTACCCAGACAACCTGCCCTCCCCCTCGTATCCACGGAAACCCCCAGCGGACCCCACTGACATTGAGGACTTCATCAATGATGGCCTGGAGGCAGCAGACCATGACCCCAACATCCCTCCCTATGACACAGCTCTGATCTATGACTACGAGGGTGATGGCTCCCTGGCAGGCAGCCTGAGCTCCATCGCCTCAGCCAGCTCAGACGGCGACCAGGACTATGACTACCTCAACGACTGGGGACCACGCTTTAAGAAACTGGCCAACATGTACGACCCACGCTAAGGAGACTGCCTGGTTATTTAGCTACCAGTACATTTACCGTAGCTTTATCCTcagatgccatctattttctcCTAAACTCCACCCAACTCCATATTCTTCATCATACATCCTCCCTCTTCTTGTAGCTAGAACCTGAGATCATCCTCAGTGTAGGACAGGGTAGGATTTTGACTAGTTGGCAGAGGTTTAGAGTGGATCTCTGTGTTCCTATTCCTTTATGTTTCCAATTGTCTCCGGCAGTGCATTAGCTCAATTCTTTAGGCTCTTTTGACACTATTGTCCTCCTCCAATCCCTCTCTTTGCAACTGTAAAAGGTCACCGTTGTCATTTTCAGGACTATCATGGGTAATGTTGATATTCTCCTCCCAGTTCAGCGACTTTCTGACCGGCTTGAAGAGACAACCACACAGCACTCTGCAACATATGAATGGTTCACCTTGTGCTGAGTGGTATGCGTGTGAATGGcgaagggagggaaggaaacaCATGGTAGAGCATACCAATGAGAGAAGAGAAATATGCACTGTAgtcctccagtcagtcagtccatagAGCCACTTAAAACCAGTGGCCTTGCCAGTCAGGTGTGTCGTCTTGAAGGTTTCTCTAATCATTTTTTGGTTTGTGTTTTGTAGAAAGCTTTTTATGTGAGAGGAATGTAGAGAAAGGTTGACCATGTACTTAAACAGTGATGGCAAAAAGGGCTAAGCATGCTATAAAGGGAAACAGAACGTCTGTGGAATTGTACCCATGTCTGGTATTAACTTTTAAAATACTTTGTGACCTCTACCATATGAAAACATTTTGATTTTCTAAATGCTGTTACGTTTTCctttttttataaatattttgTACATATTTTTTCCATTTCTTTAATTTAGTTTTCCCCTAACATTACATTAATCCTCAACTCCTAAAACAAACTCCACTTGGGAGGTCTATACACTTTGATAATTCTCCTTCAGTTTGACACCTACAATTAAAACATTTGAAGCCAATAACCAATGCTATTACATTTGAGGAGATATGGCTTGGTGGACAGTTTTCCTTCCAACATAAAGCAATACTCAAACTCCTGTGAGAACCAATGGTTTGGATGTgacatttttgttttcttgatTGACATGTATAAATTACTTTACATAATACATAAAAATGTTTCAAAGCA

Function

NR:

description
cadherin-15-like

GO:

id name namespace
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K06809 CDH15, CDH3, CDH14; cadherin 15, M-cadherin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021607143.2 True 3782 mRNA 0.49 14 62723445 62742080

Neighbor

gene id symbol gene type direction distance location
LOC110526303 acsf3 coding upstream 40243 62648128 ~ 62685350 (+)
LOC118965084 NA coding upstream 153478 62568049 ~ 62569967 (+)
LOC110526300 tpc2l coding upstream 231757 62490082 ~ 62491688 (+)
LOC110526297 LOC106587264 coding upstream 258712 62460321 ~ 62464733 (+)
LOC110526295 LOC106587266 coding upstream 337113 62377872 ~ 62386332 (+)
LOC110526939 LOC106562161 coding downstream 10626 62752706 ~ 62947192 (+)
LOC110526308 LOC106562160 coding downstream 206038 62948118 ~ 62965825 (+)
LOC110526311 LOC106587159 coding downstream 263592 63005672 ~ 63068991 (+)
LOC118965038 LOC106562187 coding downstream 377147 63119227 ~ 63176699 (+)
LOC110526312 LOC106562187 coding downstream 421772 63163852 ~ 63175505 (+)
G532263 NA non-coding upstream 10097 62713132 ~ 62713348 (+)
G532234 NA non-coding upstream 10506 62712728 ~ 62712939 (+)
G532233 NA non-coding upstream 10821 62712240 ~ 62712624 (+)
G532222 NA non-coding upstream 19687 62703540 ~ 62703758 (+)
G532210 NA non-coding upstream 37014 62686151 ~ 62686431 (+)
G532270 NA non-coding downstream 108 62742188 ~ 62742939 (+)
G532283 NA non-coding downstream 8228 62750308 ~ 62751415 (+)
G532322 NA non-coding downstream 104436 62846516 ~ 62848889 (+)
G532325 NA non-coding downstream 127349 62869429 ~ 62869862 (+)
G531406 NA other upstream 571227 62149773 ~ 62152218 (+)
LOC110526282 LOC106561985 other upstream 743918 61971487 ~ 61979527 (+)
G528653 NA other upstream 2951361 59771708 ~ 59772084 (+)
G527450 NA other upstream 3944428 58778723 ~ 58779017 (+)
LOC110526933 LOC106562045 other upstream 4351477 58318920 ~ 58408967 (+)
G532259 NA other downstream 78340 62820420 ~ 62822616 (+)
G532237 LOC106591742 other downstream 290851 63032931 ~ 63198734 (+)
G532489 NA other downstream 566453 63308533 ~ 63343755 (+)
LOC100750227 LOC106587244 other downstream 596156 63338236 ~ 63549030 (+)

Expression


Co-expression Network