LOC110526311 (LOC106587159)


Basic Information

Item Value
gene id LOC110526311
gene name LOC106587159
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 63005672 ~ 63068991 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021607149.2
TTCAAATATATCATTACATTTCCTCCCAAACGAGCGACATTGTGGCACTAACTGATGGTTGTATGGGGGAGTTGTTTATGGCTCTATCACTTTGTACGTGCTGAAGAAAATGAAAGCATAAATCAAACAAAATATAGTTATGACACCGTAATCATCTAATTGGACTGTATTCTATCTATGTCCATGGTCTTGTCAGAATGACCCTATCATGGCATTGTCTGATGTCATATCTAGGGATTTCCTAATTTGCGGGGTGTTGCTTAGGGTactatcctaagttgataactaTATGATAAGTCTACAGCTGTAAGACACTCGTTTTgggcagtctacagggatgacctatggACTTCTGAGAAGAGAACTGGTGAGTGCTGTAGCTGTAGAGTTAAAGGCCTCAAAATAAATGTTCAACTTTACTAAGGCTGGTGTTACCCACAGACCAACGTCATGACATACTGCTTGGCTATTTAAGGTCTGTAGGAAGCCAGACCATCTCATACTTCCCTTCTCACAGATAGTTAGTcagaaaaacagacagagagacaggcagttaGGTAGACGAGCAGACAGACATGGCCAGGCTGGACGTGACAGAGACCTTCCATCACATCTCATTCCCTGGGCACATTCACACCCAGGACTCCCTGAACTATGCCCTCCACTTCCAGTTTCAGGACAGGGACACTGTCATCGCCACCTACCCCAAATCAGGGACTACCTGGATGCAGGAGATTGTCACTCTTGTGAAAAACAGAGGGGACCCACAACTCTCCAAAACTGTGCCCAACTGGGCACGAGCCCCCTGGCTGGAACAGCATTACAGTGCAAAGGTGCTGGAGGCCACCCAGGGGCACCGAATCCTCACCACTCACCTGCCCTACAACCTGCTGGCTTCTGCACTCCAGGGCTCCAAAGCTAAGGTTATCTATGTCGCCAGAAACCCCAAAGATGTTGCTGTGTCATATTACCACTTCCATAAAATGGCCAAGTTCCTCCCAGAACCCAATTCATTTGATGAGTTTCTGGATAGTTTCCTGGAGGGATCAGTGAGTTATGGGTCCTGGTTCGATCATGTGAAAGGCTGGACGAGTCAAGCAGGAGTCTTGGCAAATGTTCTTTATATCTCTTATGAGGAGATGTGGCTGGACCTGCAAGGCTCGATGGAGAGGATCAGCTCTTTCCTGCAGTGCCCCCTGGTGGGCGAGGAGTTAACCAACTCCCTGAGACACTGCAGCTTCAGCAGCATGAGCGATAACGCCATGGTGAACTACACTCAGATCCCAAAGGAGATCATGGACCACAGCAAAGGCAAATTCATGAGGAAAGGTATAATCGGTGACTGGAGAAACACTTTCACAGAGGAGCAGATTGGTATTTTCGACACCGTCTACAGCTACCAGATGAAAGACTGTCCCTTGACCTTCATGTGGGAGTGTCCTCCTGAGGCCtgtggggaaggaggaggaggacaggcctCTGGGGTATCAGGATAGGGCCCTTATCCTCCATGACGCCGGAGACTGATGGATACGCTTCATACAAGTCCTGGATTCTCTCACTGATGTTCTGTGTTTTTGTGAATGTACATAtaatgtacacaacacaatatagTAAAACTATATAATGAAATTGATATGTTAATATAACAAAAAATATTTGTGTGTGAcctattgttgttgtagttgggTTTTTCCACCTCtataaaaaatctaaatgttaCAGTTAACTGAATGAGAGTGAGTTTCTCCTCCATCTTGGCTTGTGCTGCAATAGCTAGATGAAGGGACACGAGGGGGACATTTAACTCCCTGACATTGacacattggaaaacctcccagtTTGTGGCAGTGCATCAAGCAGAAGGGATGATATATTAACTCCAGAAAGGCTGACGTGTACATAAAAAGCTGCTGTTACATCAGTCACATAGCT
>TU602899
GCTCGATGGAGAGGATCAGCTCTTTCCTGCAGTGCCCCCTGGTGGGCGAGGAGTTAACCAACTCCCTGAGACACTGCAGCTTCAGCAGCATGAGCGATAACGCCATGGTGAACTACACTCAGATCCCAAAGGAGATCATGGACCACAGCAAAGGCAAATTCATGAGGAAAGGTATAATCGGTGACTGGAGAAACACTTTCACAGAGGAGCAGATTGGTATTTTCGAC
>TU602901
atagaaaattgtGAACCGAAACCGAATCCGAATCGACCTCAAAAAACACTTATCGCTCAGCACtagttccacgtagaaccctctgtggaaatggttctacatggaacccgaaAAGTTTCTATCAGGAACCAAAAGGGTTTTACTTAGAACCAAAAAGGTTTAGTCAAatggttctcttatggggacagatAGCACCTTTTTATATGAGTGTAGAGAGTGCACAAGACATAAGGCATATAAGTCGCTTGGAGTGGTGAGAGACAGAAGGGGGAGGGGATGTGGGGgaaagagactgggagagagaagcTGCTGTGTGTGGACTGTGGCTTGCAGCTGCAATTGTGGAAGAGCGAGAAAGCGTGCTCAtgtgagagagactcagagactaccagagagagagagagagagagagagagagagaaagcaaaagagggtgagagagagacagacagagatagagaaggCTGAAACACAGAGAGTGAAGTAAATAAAGAATGCAAGAAAGACTGTACAGTGACGCAGTGCTTCTCTGTCTACTTTAGGTGTACGAATTCTGTAGAGGCAGTGTGATACAAGGACTATACATTTCCTGTCTCCTATCAGCCGGATTTACTCCGAAAAGGACATCAATGACCATTGGACCATATACTTCTCCACAATATTGCAGGCACTAAAGGTGGACTTTTAGTGCAGTGACAATGCAGGAGCATCTCTCAGTCCAGCACATGGGCACCAGGAGCACACATTTCTCCTAGTAGTGAGGTTTGTCCTGGGCCTCGTCCGGACTACCATGACTGACCTCCTGGCCAACCTGAGTGTTCCATGGGGCACACAGGCGATTGTGTGCCCCAACCTGACAGCTGTGGCCTGCTGAACCGTACCCTGGCCGTGGTGTTTATGGTCAGTCTGGCCTTCGCCATAGTGGTGGGCAACGTGGTCACGCTCACCGTCTTCATGCAGACAAGACAGGTATAATCGGTGACTGGAGAAACACTTTCACAGAGAAGCAGATTGGTATTTTCGACACCGTCTACAGCTACCAGATGAAAGACTGTCCCTTGACCTTCATGTGGGAGTGTCCTCCTGAGTCCtgtggggaaggaggaggaggacaggcctCGGGATCAGGATAGGGACCTTATCCTCCATGACGCCGGAGATTGATGGATACGCTTCATACAAGTCCTGGAATTCTCTCACTTTTTGTGAATGTACATATAATGTACACAACCCAATATAGTAAAACTATATAATAAAATTGATATGCAAATATAACAAAAATATTGTGTGACCTATTTGTTGTTGTAGTTGGGTTTTTCCAActctaaaaaaatctaaatgttacAGTTAACTGCACTAGCTAGATGAAGGGACACGAGGGGGACATTTAACTCCCTGACATTGacacattggaaaacctcccagtTTGTGGCAGTGCATCAAGCAGAAGGGATGATATATTAACTCCAGAAAGGCTGACGTGTACATAAAAAGCTGCTGTTACATCAGTCACATAGCTTGACTCCGAACAACCTG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021607149.2 False 1935 mRNA 0.46 7 63005672 63015537
TU602899 False 227 TUCP 0.51 2 63012258 63014986
TU602901 True 1536 lncRNA 0.46 4 63056802 63068991

Neighbor

gene id symbol gene type direction distance location
LOC110526308 LOC106562160 coding upstream 39847 62948118 ~ 62965825 (+)
LOC110526939 LOC106562161 coding upstream 58480 62752706 ~ 62947192 (+)
LOC110526307 LOC106587258 coding upstream 263592 62723445 ~ 62742080 (+)
LOC110526303 acsf3 coding upstream 322470 62648128 ~ 62685350 (+)
LOC118965084 NA coding upstream 435705 62568049 ~ 62569967 (+)
LOC118965038 LOC106562187 coding downstream 103690 63119227 ~ 63176699 (+)
LOC110526312 LOC106562187 coding downstream 148315 63163852 ~ 63175505 (+)
LOC110526940 LOC106587158 coding downstream 185865 63201402 ~ 63210821 (+)
mcee LOC106587249 coding downstream 226849 63242386 ~ 63243598 (+)
apba2b LOC106587247 coding downstream 235055 63250592 ~ 63323571 (+)
G532381 NA non-coding upstream 8794 62996542 ~ 62996878 (+)
G532374 NA non-coding upstream 21484 62983938 ~ 62984188 (+)
G532372 NA non-coding upstream 23837 62981613 ~ 62981835 (+)
G532370 NA non-coding upstream 27185 62978271 ~ 62978487 (+)
G532237 LOC106591742 non-coding downstream 17394 63032931 ~ 63198734 (+)
G532399 NA non-coding downstream 34413 63049950 ~ 63099165 (+)
LOC110526311 LOC106587159 non-coding downstream 41265 63005672 ~ 63068991 (+)
G532412 NA non-coding downstream 81845 63097382 ~ 63151411 (+)
G532259 NA other upstream 183056 62820420 ~ 62822616 (+)
G531406 NA other upstream 853454 62149773 ~ 62152218 (+)
LOC110526282 LOC106561985 other upstream 1026145 61971487 ~ 61979527 (+)
G528653 NA other upstream 3233588 59771708 ~ 59772084 (+)
G527450 NA other upstream 4226655 58778723 ~ 58779017 (+)
G532489 NA other downstream 292996 63308533 ~ 63343755 (+)
LOC100750227 LOC106587244 other downstream 322699 63338236 ~ 63549030 (+)
LOC110526344 LOC106587225 other downstream 1753610 64769099 ~ 64781704 (+)
G534453 NA other downstream 1774785 64790322 ~ 64847104 (+)
G532430 NA non-coding downstream 120111 63189102 ~ 63190085 (+)
G532248 LOC100196237 non-coding downstream 150471 63219462 ~ 63228632 (+)
G532251 NA non-coding downstream 152180 63221171 ~ 63225329 (+)
G534653 NA other downstream 2044289 65113280 ~ 65169563 (+)

Expression


Co-expression Network