LOC118936659 (LOC106581595)


Basic Information

Item Value
gene id LOC118936659
gene name LOC106581595
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 63032929 ~ 63035742 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036980655.1
GGGCAGACAGGGGGTGAGTTCTCTCTTCAGTAGATATAAGGCCTTGGTCCTATAACTTCTCACGGAGTACATCGTCTTTACAGAGGAGACACAGCTCAACATACAAACTCATAAACAGATATTTCCATCAAAATGTGGTCATCCCTGGCAGTGCTCCTCGCGGTCTCCTGTGTCTGTCTGGCAAGAAAGgacaaaatcaaaatcaaaatcaaaaccAAATCAATTGATGAGATCCCAAACAATTCAGACCTGCGCTTCAGGCGTATGATTAGGGGCACCCTGGCCCCTCATGTCCCCTGGCAGGCCATGGTCTACCTGAGTAAAAGCGTCATGAACGGGGGCTTCGCTGGGGGAGCTCTAATCTCTGACCGCTGGGTCCTGACCGCTGGCAGGAACTTGTTTGTCAGGAAGAGTAGACAGGACACGCAGGGGAAAGAACCAATCATCCCCAAGGTGTACTTAGGCATCACGCGACAATCCCAAGCCGATGACTCCAAAGAAGTTGCTGTAGAAAAGGTGGTTCTGCACCCAGGCTTCCAGAACGTATCAGACTGGGACAACGACCTGGCTCTGATTCAGCTGAAGGAGCCATTCACCCTGAGCGAGGCTGTGATGCCCATCCCTCTGCCTGAGAGGGGCCAGGACCTGGCTGAGGCAGCCCAGGAGAAAGGCATCATCACAGGCTGGGGTTGGGGGGTCTTCTTCACCCCCGCTAAGTCACTGAAACACCTGGTATTGCCTGTGGCATCGCATAGCTCCTGTAAGGCAGAGTACAACCCTGGTGGCCAAGTACTGAGCAGCACTCCAACCGTAGATGACAACATGTTCTGTACTGGAGCCAGCAAGTACCAGGAgaatgtgtgctttggggacgcAGGCGGTGCCCTGGCAGTCCAGGACCCCAAAGACGGCCGAGTGTATGCTGCAGGGATCCTGTCCTTCGATAAGACCTGTGCCGTGGAGAAATACGCTGTCTACATGAAGCTCTCTGCCTACATGCCTTGGATCAACAGTGTCCTCAGGGGCGACAGTGAGACATCAGCCAGTCTCCGCTCCAGTGTAATGTCTGAGATGTATTCGAGGCAGTTGTAGCCTCCACGGGGCTCATAATCTCCATTATGCCTTTGCTAACAAAGTCATATTCTGACTTGATCTTGTCAAACTCTCTCAAGTTATGACTTTCATTGAGTGTGTCTTCCGATGTTGGTTTCAAAGGATTTTCAATAAATTTGGTTTCTGATGTTTCACCTTA

Function

NR:

description
haptoglobin

GO: NA

KEGG:

id description
K16142 HP; haptoglobin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036980655.1 True 1252 mRNA 0.51 4 63032929 63035742

Neighbor

gene id symbol gene type direction distance location
LOC110526310 LOC106587159 coding downstream 40934 62985486 ~ 62991995 (-)
LOC110526309 dpep1 coding downstream 58010 62966215 ~ 62974919 (-)
LOC110526305 LOC106587257 coding downstream 284548 62742187 ~ 62748381 (-)
LOC110526304 NA coding downstream 385754 62623295 ~ 62647175 (-)
LOC110526302 LOC106562167 coding downstream 466715 62500665 ~ 62566214 (-)
LOC118964917 NA coding upstream 46477 63082219 ~ 63084974 (-)
LOC118964916 LOC106581595 coding upstream 51320 63087062 ~ 63089877 (-)
LOC118964918 LOC106598822 coding upstream 105106 63140848 ~ 63143637 (-)
dhodh dhodh coding upstream 153331 63189073 ~ 63198128 (-)
LOC110526317 LOC100196237 coding upstream 183694 63219436 ~ 63224162 (-)
G532886 NA non-coding downstream 23482 63009166 ~ 63009447 (-)
G532875 NA non-coding downstream 34599 62997707 ~ 62998330 (-)
G532855 NA non-coding downstream 54176 62978489 ~ 62978753 (-)
G532848 LOC106562160 non-coding downstream 66892 62962037 ~ 62966037 (-)
G532871 NA non-coding upstream 45078 63080820 ~ 63140339 (-)
G532899 LOC106562187 non-coding upstream 138197 63173939 ~ 63175985 (-)
G532865 NA non-coding upstream 186268 63222010 ~ 63226843 (-)
G532870 NA non-coding upstream 209128 63244870 ~ 63245226 (-)
G532866 NA non-coding upstream 209754 63245496 ~ 63246627 (-)
G532766 NA other downstream 177922 62822905 ~ 62855007 (-)
G532763 NA other downstream 180112 62851696 ~ 62852817 (-)
znf536 LOC106562015 other downstream 3335966 59507092 ~ 59698393 (-)
igdcc3 LOC106562146 other upstream 788157 63823887 ~ 63944930 (-)
G534201 NA other upstream 1462711 64498453 ~ 64499614 (-)
G534349 NA other upstream 1543056 64578798 ~ 64614796 (-)
G534603 NA other upstream 1819753 64855495 ~ 64895099 (-)
LOC110526365 LOC106587205 other upstream 2588247 65600097 ~ 65765382 (-)

Expression


Co-expression Network